BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146561.3 + phase: 0
(262 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37510 unknown protein 370 e-103
At5g20320 CAF-like protein 38 0.006
At4g15417 unknown protein 32 0.26
At5g34930 arogenate dehydrogenase 30 1.3
At3g51180 unknown protein 30 1.7
At4g34740 amidophosphoribosyltransferase 2 precursor 28 3.8
At5g13720 unknown protein 28 5.0
At5g04440 putative protein 28 5.0
At3g48830 putative protein 28 5.0
At1g59265 polyprotein, putative 28 5.0
At1g58889 polyprotein, putative 28 5.0
At5g63340 unknown protein 28 6.5
At4g10630 putative protein 28 6.5
At3g53930 unknown protein 28 6.5
At3g09850 putative protein 27 8.5
At3g03540 unknown protein 27 8.5
At1g70620 unknown protein 27 8.5
>At4g37510 unknown protein
Length = 537
Score = 370 bits (949), Expect = e-103
Identities = 185/253 (73%), Positives = 208/253 (82%), Gaps = 1/253 (0%)
Query: 10 SPKPTNFSFSSSFSPFPIQILIKNTKSRNYPLHVLAVAIDPTKDFPRNNNPQRLLKELAE 69
S SFSSS S FP + TKSR L + A T+ PR++ PQRLLKELA+
Sbjct: 17 SSSAPEISFSSSISQFPSKTQSILTKSRFQNLRICASVTAETQGLPRDS-PQRLLKELAQ 75
Query: 70 RKKITNPKSKSPPRRYILKPPLDDKKLAERFLNSPQLSLKSFPLLSSCLPSLRLNNADKL 129
RK T PK K PP+R+IL+PPLDDKKLAERFLNSPQLSLKSFPLLSSCLPS +LNNADK
Sbjct: 76 RKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLPSSKLNNADKT 135
Query: 130 WIDEYLLEAKQALGYSLEPSETLEDDNPAKQFDTLLYLAFQHPSCERTKQKHVRSGHSRL 189
WIDEYLLE KQALGYSLEPSE+L DDNPAK FDTLLYLAFQHPSC+R + +HV++GHSRL
Sbjct: 136 WIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARARHVKNGHSRL 195
Query: 190 FFLGQYVLELALAEFFLQRYPRELPGPMRERVYGLIGKENLPKWIKAASLQNLIFPYDNM 249
+FLGQYVLELAL EFFLQRYPRE PGPMRERV+ LIGK LPKWIKAASLQNLIFPYD+M
Sbjct: 196 WFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASLQNLIFPYDDM 255
Query: 250 DKIVRRDREGPVK 262
DK++R++RE PVK
Sbjct: 256 DKLIRKEREPPVK 268
Score = 43.9 bits (102), Expect = 9e-05
Identities = 37/144 (25%), Positives = 72/144 (49%), Gaps = 7/144 (4%)
Query: 104 PQLSLKSFP-LLSSCLPSLRLNNADKLWIDEYLLEAKQALGYSLEPSETLEDDNPAKQFD 162
P+ +L + P L +C+P +W + + Q LGY L ++ +++ A+ +
Sbjct: 338 PEDALFAHPRLFRACVPPGMHRFRGNIWDFDSKPKVMQTLGYPLTMNDRIKEITEARNIE 397
Query: 163 TLL--YLAFQHPSCERTKQKHVRSGHSRLFFLGQYVLELALAEFFLQRYPRELPGP-MRE 219
L L F HPS + K +H R RL ++GQ + ++A+AE L ++ + PG ++E
Sbjct: 398 LGLGLQLCFLHPS--KHKFEHPRFCFERLEYVGQKIQDIAMAERLLMKH-LDAPGKWLQE 454
Query: 220 RVYGLIGKENLPKWIKAASLQNLI 243
+ L+ + ++++ L N I
Sbjct: 455 KHRRLLMNKFCGRYLREKRLHNFI 478
>At5g20320 CAF-like protein
Length = 1589
Score = 37.7 bits (86), Expect = 0.006
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 150 ETLEDDNPAKQFDT-LLYLAFQHPSCERTKQKHVRSGHSRLFFLGQYVLELALAEFFLQR 208
ETLE+ K LL AF HPS R H + RL FLG VL+ + +F
Sbjct: 1222 ETLENQLDYKFLHKGLLVQAFIHPSYNR----HGGGCYQRLEFLGDAVLDYLMTSYFFTV 1277
Query: 209 YPRELPGPMRERVYGLIGKENLPKWIKAASLQNLIF 244
+P+ PG + + + E L + SL+ +F
Sbjct: 1278 FPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLF 1313
>At4g15417 unknown protein
Length = 203
Score = 32.3 bits (72), Expect = 0.26
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 93 DKKLAERFLNSPQLSLKSFPLLSSCLPSLRLNNADKLWIDEYLLEAKQALGYSLEPSETL 152
+K ++ LN +SL S P L S +L+NA ID + + +G S +P + +
Sbjct: 2 NKTQTQQKLNQRHISLSSNPPLVSM--GSQLSNA----IDGK--DNTKTIG-SADPDQLM 52
Query: 153 EDDNPAKQFD------TLLYLAFQHPSCERTKQKHVRSGHSRLFFLGQYVLELALAEFFL 206
E ++ K + +LL AF S K + + L LG +L + + F+
Sbjct: 53 EIESLEKILNYKFKDKSLLLKAFTDASYVDDKSE----SYELLELLGDSILNMGIIYDFI 108
Query: 207 QRYPRELPGPM 217
+ YP+E PGP+
Sbjct: 109 KLYPKEAPGPL 119
>At5g34930 arogenate dehydrogenase
Length = 640
Score = 30.0 bits (66), Expect = 1.3
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 96 LAERFLNSPQLSLKSFPLLSSCLPSLRLNNADK 128
+AE + P LSL SF LSS LPSL L+ A++
Sbjct: 1 MAETLITKPPLSL-SFTSLSSMLPSLSLSTANR 32
>At3g51180 unknown protein
Length = 521
Score = 29.6 bits (65), Expect = 1.7
Identities = 26/111 (23%), Positives = 39/111 (34%), Gaps = 14/111 (12%)
Query: 11 PKPTNFSFSS--------SFSPFPIQILIKNTKSRNYPLHVLAVAIDPTKDFPRNNNPQR 62
PKP N S S S P P+ + K + P P+ P N N R
Sbjct: 309 PKPVNGSISPPKPITGKPSSIPMPVHFHVGIAKEQPQPARF------PSSSLPMNLNFHR 362
Query: 63 LLKELAERKKITNPKSKSPPRRYILKPPLDDKKLAERFLNSPQLSLKSFPL 113
+E K I NP+ + P ++ + + PQ S+P+
Sbjct: 363 PPNVFSEPKVIVNPQPQHQPYSAFRTSEMNYVQSSIGLGRGPQTGFNSYPM 413
>At4g34740 amidophosphoribosyltransferase 2 precursor
Length = 561
Score = 28.5 bits (62), Expect = 3.8
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 8/52 (15%)
Query: 5 SSFSLSPKPTNFSFSSSFSPFPIQILIKNTKSRNYPLHVLAVAIDPTKDFPR 56
SS S SP P + S SSS FP+++ + PL +LA D + PR
Sbjct: 41 SSSSFSPLPASISSSSSSPSFPLRV--------SNPLTLLAADNDDYDEKPR 84
>At5g13720 unknown protein
Length = 262
Score = 28.1 bits (61), Expect = 5.0
Identities = 14/53 (26%), Positives = 26/53 (48%), Gaps = 7/53 (13%)
Query: 196 VLELALAEFFLQRYPRELPGPMRER------VYGLIGKENLPKWIKAASLQNL 242
+ + L F+ P ++P P +R ++G+ + PKW+K +SL L
Sbjct: 155 IFSMGLYGLFISHSPHDVP-PESDRALRSSSLFGMFAMKERPKWMKISSLDEL 206
>At5g04440 putative protein
Length = 285
Score = 28.1 bits (61), Expect = 5.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 4 SSSFSLSPKPTNFSFSSSFSPFPI 27
SSSF SPKP++ + SSS SP +
Sbjct: 36 SSSFDESPKPSSLATSSSTSPIRV 59
>At3g48830 putative protein
Length = 881
Score = 28.1 bits (61), Expect = 5.0
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 6/42 (14%)
Query: 119 PSLRLNNADKLWIDEYLLEAKQALGYSLEPSETLE--DDNPA 158
P ++ N A+KLW ++YLL +E ET+E D+ P+
Sbjct: 764 PRIKYNLAEKLWYEDYLLRD----SLLIEEDETVEGLDETPS 801
>At1g59265 polyprotein, putative
Length = 1466
Score = 28.1 bits (61), Expect = 5.0
Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 7/56 (12%)
Query: 4 SSSFSLSPKPTNFSFSSSFSPFPIQILIKNTKSRNYPLHVLAVAIDPTKDFPRNNN 59
+ S S SP PT + SSS SP P ILI +P LA ++ P N +
Sbjct: 879 AQSSSSSPSPTTSASSSSTSPTPPSILI-------HPPPPLAQIVNNNNQAPLNTH 927
>At1g58889 polyprotein, putative
Length = 1466
Score = 28.1 bits (61), Expect = 5.0
Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 7/56 (12%)
Query: 4 SSSFSLSPKPTNFSFSSSFSPFPIQILIKNTKSRNYPLHVLAVAIDPTKDFPRNNN 59
+ S S SP PT + SSS SP P ILI +P LA ++ P N +
Sbjct: 879 AQSSSSSPSPTTSASSSSTSPTPPSILI-------HPPPPLAQIVNNNNQAPLNTH 927
>At5g63340 unknown protein
Length = 172
Score = 27.7 bits (60), Expect = 6.5
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 33 NTKSRNYPLHVLAVAIDPTKDFPRNNNPQRLLKELAERKKITNPKSKSPPRRYILKPPLD 92
N +Y LHV + P K P+ ++L K+L E + + +SK PPL
Sbjct: 44 NPMMNSYELHVKIKSNSPKKYLPQ----RQLAKKLIETLEKPSTESKKRSEEMSSPPPLI 99
Query: 93 DKKLAERFLNSPQLSLKSF 111
+ K LNS Q +L +
Sbjct: 100 ESKP----LNSSQPNLDGY 114
>At4g10630 putative protein
Length = 334
Score = 27.7 bits (60), Expect = 6.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 49 DPTKDFPRNNNPQRLLKELAERKKITNPKSKSPPRRYILKPPLDDKKLAERF 100
DP++ PR N +LK L ++ ++ S+SP + + PL D KL E+F
Sbjct: 119 DPSRRNPRKNLNDEVLKPLDLNREDSDSNSRSPRKSF---KPL-DLKLDEKF 166
>At3g53930 unknown protein
Length = 711
Score = 27.7 bits (60), Expect = 6.5
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 1 MELSSSFSLSPKPTNFSFSSSFSPFPIQILIKNTKSRNYPLHV 43
+++ SS S SPKP N+ F S SP P++ + +N + P+ +
Sbjct: 429 VDIPSSSSGSPKPFNYPF-KSHSP-PVEFIKRNVTNLTAPMPI 469
>At3g09850 putative protein
Length = 781
Score = 27.3 bits (59), Expect = 8.5
Identities = 21/93 (22%), Positives = 40/93 (42%), Gaps = 3/93 (3%)
Query: 128 KLWIDEYLLEAKQALGYSLEPSETLEDDNPAKQFDTLLYLAFQHPSCERTKQKHVRSGHS 187
++ +D + L + L ++ D+ ++ L + Q S E K+K RSG+S
Sbjct: 317 EIMLDAHWLAEQSLDKLDLSSDDSSSSDSSDRKTRKLTGIRLQKASMEYGKKKTTRSGYS 376
Query: 188 RLFFLGQYVLELALAEFFLQRYPRELPGPMRER 220
G+ LA+ + + PR L G ++
Sbjct: 377 G---HGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406
>At3g03540 unknown protein
Length = 521
Score = 27.3 bits (59), Expect = 8.5
Identities = 19/90 (21%), Positives = 34/90 (37%)
Query: 16 FSFSSSFSPFPIQILIKNTKSRNYPLHVLAVAIDPTKDFPRNNNPQRLLKELAERKKITN 75
F+F + FP + +N + Y + KD N P ++ E + N
Sbjct: 198 FTFGIYYQCFPTTLFYRNLRKLKYLTRFHDYGLQFKKDCKEGNLPNYVVVEQRWYDLLLN 257
Query: 76 PKSKSPPRRYILKPPLDDKKLAERFLNSPQ 105
P + P + + K++ E +SPQ
Sbjct: 258 PANDDHPSHDVSEGQKLVKEVYEALRSSPQ 287
>At1g70620 unknown protein
Length = 897
Score = 27.3 bits (59), Expect = 8.5
Identities = 34/150 (22%), Positives = 60/150 (39%), Gaps = 29/150 (19%)
Query: 13 PTNFSFSSSFSPFPIQILIKN---TKSRNYPLHVLAVAIDPTKDFPRNNNPQRLLKELAE 69
P+NFS +++ P ++ + +++ P H ++AI P +
Sbjct: 295 PSNFSDHNAWQPHTTSGVVYPPIPSSAQSIPQHDSSMAIPPVSGH---------IMPPYG 345
Query: 70 RKKITNPKSKSPPRRYILKPPLDDKKLAERFLNSPQLSLKSFPLLSSCLPSLRLNNADKL 129
R NP+ PP + KPPL F++ + S P + +P+
Sbjct: 346 RFPPPNPQPVGPPYAFGTKPPLHP---VAAFMDD-SYAASSVPPKKAPVPN--------- 392
Query: 130 WIDEYLLEAKQALGY----SLEPSETLEDD 155
W+ E LL+ K LG E E+++DD
Sbjct: 393 WLKEELLKKKADLGRPSSGRFEERESMDDD 422
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,388,297
Number of Sequences: 26719
Number of extensions: 283304
Number of successful extensions: 803
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 18
length of query: 262
length of database: 11,318,596
effective HSP length: 97
effective length of query: 165
effective length of database: 8,726,853
effective search space: 1439930745
effective search space used: 1439930745
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146561.3