BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146556.9 + phase: 0
(2244 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 769 0.0
At3g31530 hypothetical protein 461 e-129
At2g15410 putative retroelement pol polyprotein 403 e-112
At2g13330 F14O4.9 377 e-104
At2g14400 putative retroelement pol polyprotein 324 3e-88
At2g14380 putative retroelement pol polyprotein 295 2e-79
At1g37200 hypothetical protein 286 7e-77
At4g03800 275 2e-73
At2g15100 putative retroelement pol polyprotein 272 1e-72
At2g10780 pseudogene 266 8e-71
At1g37060 Athila retroelment ORF 1, putative 266 1e-70
At4g10580 putative reverse-transcriptase -like protein 263 9e-70
At2g04670 putative retroelement pol polyprotein 259 2e-68
At2g07660 putative retroelement pol polyprotein 251 3e-66
At3g11970 hypothetical protein 250 8e-66
At2g14650 putative retroelement pol polyprotein 250 8e-66
At1g36590 hypothetical protein 250 8e-66
At1g35370 hypothetical protein 240 6e-63
At2g14040 putative retroelement pol polyprotein 234 4e-61
At2g06320 putative retroelement pol polyprotein 206 2e-52
>At1g20390 hypothetical protein
Length = 1791
Score = 770 bits (1987), Expect = 0.0
Identities = 435/1117 (38%), Positives = 636/1117 (55%), Gaps = 49/1117 (4%)
Query: 1138 ELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHQIPT 1197
E+VNI + R + +GA + ++ ++I LL+ FAWS EDM G+DP I H++
Sbjct: 712 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 771
Query: 1198 KPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 1257
P PV+QK R+ P+ A + EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 772 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 831
Query: 1258 VDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP 1317
VD+ DLNKA PKD++PLPHID LV+ T+ + + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 832 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 891
Query: 1318 WGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKM 1377
GT+CYKVM FGL NAGATYQR + + D I + VEVY+DDM+VKS E HVE+L+K
Sbjct: 892 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 951
Query: 1378 FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGF 1437
F+ L Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+ ++V+
Sbjct: 952 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1011
Query: 1438 LGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEG 1497
GR+ ++RFIS T C P + LL++ W+ + +EAF+ +K+YL PPILV P G
Sbjct: 1012 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1071
Query: 1498 RPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAK 1557
L +Y+AV D ++ VL ++D ++ I+Y SK + ETRY ++EK A+ +A+
Sbjct: 1072 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1129
Query: 1558 RLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILAD 1617
+LR Y +HT +++ P++ + +G++ +W + LSEYDI F+ + A+K +LAD
Sbjct: 1130 KLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLAD 1188
Query: 1618 HLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISKWGLVFDGAVNAYGKGI 1677
L PL + EE W L DG+ +A G GI
Sbjct: 1189 FLIELPLQSAERAVSGNRGEE-----------------------WSLYVDGSSSARGSGI 1225
Query: 1678 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1737
G +VSP + + R+ F TNN+AEYE I G+ A M+I + + DS L+ Q+
Sbjct: 1226 GIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQL 1285
Query: 1738 KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV- 1796
GE+E + K+ Y + + F +L IPR +N ADALA L+ + +D+
Sbjct: 1286 SGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDLR 1341
Query: 1797 PIIKVQRLERPS-----HVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQD 1851
II V+ +++PS V + + + D W +I+ +L G D
Sbjct: 1342 RIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYL-----SDGTLPSD 1396
Query: 1852 KKTLRRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTM 1908
K T RRL A ++ L + L K + +L C+ E ++M + H+G G H+ G +
Sbjct: 1397 KWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRAL 1456
Query: 1909 SRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIG 1968
+ KL + G+YW TM DC + KC +CQ +A IH P L +P+PF W +D++G
Sbjct: 1457 ALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVG 1516
Query: 1969 RIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNG 2028
+ AS RFILV DYFTKWVEA SY + V F+ IICR+G+P +IITDNG
Sbjct: 1517 PM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNG 1574
Query: 2029 TNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD-WHEMLP 2087
+ + + C +KI + S+P PQ NG EA NK I ++K + K W + L
Sbjct: 1575 SQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELD 1634
Query: 2088 YALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLN 2147
L YRTT RS+T TPF+ YGMEA+ P EV SLR M K E + D+L+
Sbjct: 1635 GVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLD 1693
Query: 2148 LIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPD-PRGKWTPNYE 2206
+EE R A+ R Q+YQ +++KVH R F VG+LVL++ + GK N+E
Sbjct: 1694 DLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWE 1753
Query: 2207 GPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2243
G Y V K G L M G +P N+ +K+Y+
Sbjct: 1754 GSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1790
Score = 72.8 bits (177), Expect = 2e-12
Identities = 47/176 (26%), Positives = 83/176 (46%), Gaps = 7/176 (3%)
Query: 812 FSEEELPEVGKSHNLALHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRS 871
F++ +L + HN L + + ++ VL+DTGSS++++ K L ++ ++
Sbjct: 555 FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 614
Query: 872 TFLVKAFDGSRKNVLGEIDLPITIGPENFLITFQVMDINASYSCLLGRPWIHDAGAVTST 931
+ + FDG +G I LPI +G + F V+ A Y+ +LG PWIH A+ ST
Sbjct: 615 SKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPST 674
Query: 932 LHQKLKFIRNGKLVTVHG-------EEAYLVSQLTSFSCIEAGSAEGTAFQGLTIE 980
HQ +KF + + T+ +Y S+L + ++ T G+ E
Sbjct: 675 YHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAE 730
Score = 44.7 bits (104), Expect = 6e-04
Identities = 41/219 (18%), Positives = 92/219 (41%), Gaps = 5/219 (2%)
Query: 132 TIEERMAELAKELRREIKANRGNGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQN 191
TI E +++ + + +R ++ +T ++ V + K+ + + YNG P+
Sbjct: 127 TISEMSSKIHRATSTAPELDRVLEETQQTPFTRRITNVSIRGAQKI-KLESYNGRNDPKE 185
Query: 192 HIVKY---VRKMGNYKDN-DSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSH 247
+ + + + DN D+ F + L A W++ L + + +F +L ++F H
Sbjct: 186 FLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSIDSFHQLTSSFLKH 245
Query: 248 YGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDY 307
Y + + L S+SQ +ES R + R++ IT + + +
Sbjct: 246 YAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVPDEAAIVALRNAVWYDSRF 305
Query: 308 VERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 346
+ + + AP+ + + +R E + +I+ K S+
Sbjct: 306 RDDITLHAPSTLEDALHRASRFIELEEEKLILARKHNST 344
>At3g31530 hypothetical protein
Length = 831
Score = 461 bits (1185), Expect = e-129
Identities = 284/865 (32%), Positives = 445/865 (50%), Gaps = 120/865 (13%)
Query: 1291 SFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIH 1350
S+ ++ + + M+PED+EKT+F T G FCY+VMPFGL NAGATY+R + +F I
Sbjct: 83 SYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKIFALQIG 142
Query: 1351 KEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQK 1410
K +EVY+DDM+VKS E+ H+ +L + F++L Y ++LNP KC FGVRS
Sbjct: 143 KTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRS----------- 191
Query: 1411 GIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVW 1470
GIE +P ++ A+ M +PQ +++V+ GR+ ++RFIS T C + +LR+N+ W
Sbjct: 192 GIEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKKFEW 251
Query: 1471 NDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYY 1530
C+EAF +K YL PPIL PV G P +Y+AV D ++ L ++D +K I+Y
Sbjct: 252 TTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQK--LIFY 309
Query: 1531 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1590
+S+ FT E+RY +EK A+ +A++LR Y +H+ ++ M P++ I + +G++
Sbjct: 310 VSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQSGRL 368
Query: 1591 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1650
A+W + LSEYDI ++ + K +LAD + P + + E P
Sbjct: 369 AKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEAR-------------------ENP 409
Query: 1651 LINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1710
L + W L DG+ + G G+G + SP G E TNN+AEYEA +
Sbjct: 410 L-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEYEALV 451
Query: 1711 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHI 1770
G+ A ++I + DS L+ NQ GE+ T K+ Y + + L F + EL I
Sbjct: 452 AGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRI 511
Query: 1771 PRDENQMADALATLSSMFRVNHWNDVPIIKVQR----LERPSHVFAIGDVIDQAGENVVD 1826
PR EN ADALA L+S + +P+ +++ L + HV I DQ + +
Sbjct: 512 PRGENTSADALAALASTSDTSLKRVIPVEFIEKPSIELGKEEHVLPIQISADQDDPDDCN 571
Query: 1827 YRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHE 1886
W I ++ + P + K + L+ A RF+L LYK L+ CV+
Sbjct: 572 -SEWMEPIISYISEGKLP--SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVEAEA 628
Query: 1887 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVP 1946
++M ++H G+ +A IH P
Sbjct: 629 ICKIMKEIHSGS----------------------------------------HAPTIHQP 648
Query: 1947 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 2006
L+ ++SP+PF W +D+IG + P S + +LV DYF+KW+EA SY ++ V
Sbjct: 649 AELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAESYASIKDAQVE 706
Query: 2007 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 2066
F+ +I+CR+G+P +I+TDNG+ + Q C+++ I S+P PQ NG EAAN+
Sbjct: 707 NFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQAEAANE 766
Query: 2067 NIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 2126
L L +RTT R +T TPF+ +YG E V+P E+ +PSLR
Sbjct: 767 -------------------LEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMIVPSLR 807
Query: 2127 VIMEAKLSEAEWCQSRYDQLNLIEE 2151
+ + ++ + Q+ D+L+LI+E
Sbjct: 808 RSLSPE-NDPDNTQTPLDELDLIDE 831
Score = 40.8 bits (94), Expect = 0.009
Identities = 19/53 (35%), Positives = 28/53 (51%)
Query: 886 LGEIDLPITIGPENFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKF 938
LG I LP+ ++ F + D Y+ ++G PW++ AV ST H LKF
Sbjct: 3 LGTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKF 55
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 403 bits (1035), Expect = e-112
Identities = 202/497 (40%), Positives = 311/497 (61%), Gaps = 24/497 (4%)
Query: 1115 IPYEITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPD 1174
I Y + + Q+++ P + + VNI + R + I L ++ +++ LR+
Sbjct: 695 IIYNVILVPTQDERP-NPQKGTVVQVNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAA 753
Query: 1175 IFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1234
FAWS EDMPG+D + H++ P P++QK R+ PD + EV+K +DAG ++
Sbjct: 754 TFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVE 813
Query: 1235 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1294
V YP+W+ N V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV+ TA +++ SFMD
Sbjct: 814 VRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMD 873
Query: 1295 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1354
FSGYNQI M DREKT FIT GT+CYKVMPFGL NAGATY R + +F D + +E
Sbjct: 874 AFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSME 933
Query: 1355 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1414
VY+DDM+VKS E+H+ +L + F+ L +Y ++LNP+KCTFGV SG+ LG++V+++GIE
Sbjct: 934 VYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEA 993
Query: 1415 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDEC 1474
+P ++ AI ++P+P+ ++V+ +GR+ ++RFIS T C P ++LLR N+ W+++C
Sbjct: 994 NPKQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKRFEWDEKC 1053
Query: 1475 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKK 1534
+ EG L +Y+AV ++ VL ++D ++H I+Y+SK
Sbjct: 1054 E--------------------EGETLYLYIAVSTSAVSGVLVREDR--GEQHPIFYVSKT 1091
Query: 1535 FTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQ 1594
E RY LEK A+ +A++LR Y ++T +++ P++ I + +G++A+W
Sbjct: 1092 LDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTN-QPLRTILHSPSQSGRLAKWA 1150
Query: 1595 MLLSEYDIVFKTQKAIK 1611
+ LSEYDI +K + K
Sbjct: 1151 VELSEYDIAYKNRTCAK 1167
Score = 318 bits (814), Expect = 3e-86
Identities = 205/608 (33%), Positives = 298/608 (48%), Gaps = 72/608 (11%)
Query: 1697 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYAR 1756
F +NN AEYEA I G+ A + +K + Y DS LV +Q G +E + ++ Y R
Sbjct: 1190 FPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVR 1249
Query: 1757 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVN-------HWNDVPIIKVQ-RLERPS 1808
L F EL IPR +N ADALA L+S + DVP IK+Q + +PS
Sbjct: 1250 ELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPS 1309
Query: 1809 HVFAIGDVIDQAGENVVDYRP--------------------------------------- 1829
I +Q +V P
Sbjct: 1310 EYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSD 1369
Query: 1830 ------WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLR 1880
W +I+ ++ R P +DK RRL R + L + L + + VLL
Sbjct: 1370 SPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLS 1424
Query: 1881 CVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYA 1940
C+D+ EA+Q+M ++H+G G H+ G ++ K+ + G YW TM DC ++ +C KCQ +A
Sbjct: 1425 CLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHA 1484
Query: 1941 DKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 2000
IH+P L P+PF W +D+I AS ++ILV DYFTKW EA SY +
Sbjct: 1485 PFIHIPSEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARI 1542
Query: 2001 TKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGA 2060
+ V F+ NIIC +G+P +I+TDNGT + + C ++KI S+P PQ NG
Sbjct: 1543 QSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQ 1602
Query: 2061 VEAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2119
EA NK I ++K + K W + L L YRTT R ST TPFSL YGMEA+ P E
Sbjct: 1603 AEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCE 1662
Query: 2120 VEIPSLR---VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVH 2176
+P++R +I + L++ Q D L+ +EE+R A+ R Q+YQ ++KKV
Sbjct: 1663 AGLPTVRRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVK 1718
Query: 2177 PREFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 2235
R F G+LVL++ + GK ++EGPY++ K G L MDG +P N
Sbjct: 1719 NRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWN 1778
Query: 2236 ADIVKKYF 2243
+ +K+Y+
Sbjct: 1779 SANLKRYY 1786
Score = 34.3 bits (77), Expect = 0.85
Identities = 23/102 (22%), Positives = 43/102 (41%), Gaps = 4/102 (3%)
Query: 183 YNGLTCPQNHIVKYVRKMGNY----KDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFD 238
Y GL P+ + +G +D D+ F L A W++ L + + +
Sbjct: 258 YEGLVDPRPFLTSVSIAIGRAHFSDEDRDAGSCQLFVKHLSGAALTWFSRLEANSIDSVH 317
Query: 239 ELATAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 280
L T+F +YG + L +++Q +ES R + R++
Sbjct: 318 ALTTSFLKNYGVFMEKGASNVDLWTMAQTAKESLRSFIGRFK 359
>At2g13330 F14O4.9
Length = 889
Score = 377 bits (969), Expect = e-104
Identities = 204/538 (37%), Positives = 302/538 (55%), Gaps = 59/538 (10%)
Query: 1249 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPED 1308
+K+GK R+C+DFRDLNKA PKD+FPLPHID LV+ T + + SFMD F GYNQI M +
Sbjct: 289 EKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDG 348
Query: 1309 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEE 1368
+EKT+FIT GT+ YKVMPFGL NAG TYQR + +F D + K +EVY+DDM+VKS E+
Sbjct: 349 QEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEK 408
Query: 1369 QHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAP 1428
HV L + F+ L K++++LNP KC+F V+S + L ++V+++GIE +P ++ A EMP+P
Sbjct: 409 DHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSP 468
Query: 1429 QTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEP 1488
+ ++V+ GR+ ++ FIS C P ++ LRK + WN +C++AF +K YL EP
Sbjct: 469 KMAREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEP 528
Query: 1489 PILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKT 1548
PIL P +G PL +Y T+ + R +EK
Sbjct: 529 PILAKPEKGEPLYLY--------------------------------TNRDKRCPAMEKL 556
Query: 1549 CCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQK 1608
+ + ++LR Y +H ++ PI+ I +G++A+W + L EYDI ++T+
Sbjct: 557 ALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRT 615
Query: 1609 AIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISKWGLVFDG 1668
++K +LAD + PL D +G + KW L DG
Sbjct: 616 SLKAQVLADFVIKLPLADL--------------------------DGTNSNKKWLLHVDG 649
Query: 1669 AVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYG 1728
+ N G G+G + SP G I + ++ F +NN +EYEA I GI+ A + I+ + Y
Sbjct: 650 SSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYS 709
Query: 1729 DSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 1786
DS LV +Q GE+E ++ Y + + L F +L IPR EN AD LA L+S
Sbjct: 710 DSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767
Score = 73.9 bits (180), Expect = 1e-12
Identities = 44/144 (30%), Positives = 74/144 (50%)
Query: 808 NNLWFSEEELPEVGKSHNLALHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLSYRGTP 867
+ + F E E+ ++ K H+ AL I ++ + +S ++VDTGSS++V+ + + +
Sbjct: 45 DGITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSK 104
Query: 868 LRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLITFQVMDINASYSCLLGRPWIHDAGA 927
L+ + F G +G I LP L F V+D A ++ +LGRPW+H A
Sbjct: 105 LQGRKTPLTGFAGDTTFSIGTIQLPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKA 164
Query: 928 VTSTLHQKLKFIRNGKLVTVHGEE 951
V ST HQ +KF + V+G +
Sbjct: 165 VPSTYHQCIKFPSYKGIAVVYGSQ 188
Score = 33.5 bits (75), Expect = 1.4
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 1137 IELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGL 1186
I V I + KR + IG L+ V++ +I L+E D FAWS ++ G+
Sbjct: 237 ITQVCIDESDPKRCVGIGHDLDLTVREDLITFLKENKDSFAWSSANLQGI 286
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 324 bits (831), Expect = 3e-88
Identities = 158/355 (44%), Positives = 240/355 (67%), Gaps = 2/355 (0%)
Query: 1209 RRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASP 1268
R+ + A + EV K + G + V+YP+W+AN V V KK+GK R+C+DF DLNKA P
Sbjct: 470 RKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACP 529
Query: 1269 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPF 1328
KD+FPLPHID LV++TA +++ SFMD FSGYNQI M+PED+EKT FIT G +CYKVMPF
Sbjct: 530 KDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589
Query: 1329 GLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRL 1388
GL NAGATY R + +F + + K +EVY+DDM++KS +E HV++L + F L +Y+++L
Sbjct: 590 GLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKL 649
Query: 1389 NPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFI 1448
NP KCTFGV SG+ LG+IV+++GIE +P+++ A MP+P+ K+V+ GR+ ++RFI
Sbjct: 650 NPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFI 709
Query: 1449 SHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFD 1508
S T P +++L+ N+ +W+++C+EAF +K YL PP+L P L +Y++V +
Sbjct: 710 SRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSN 769
Query: 1509 ESMGCVLGQQDETGKKEHAIYYLSKKFT-DCETRYTMLEKTCCALAWAAKRLRHY 1562
++ VL ++D G+++ Y + +F D E + + +E + AK R +
Sbjct: 770 HAVSGVLIREDR-GEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKF 823
Score = 223 bits (567), Expect = 1e-57
Identities = 163/538 (30%), Positives = 255/538 (47%), Gaps = 80/538 (14%)
Query: 1732 LVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMF--R 1789
+++NQ G++E +++ Y + L F K EL IPR +N ADALA L+S
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 1790 VNHWNDVPIIKVQRLERPSHVFAIGDVIDQA---GENVVDYRPWYYDIKQFLLSREYPPG 1846
VN V I + ++ F + A G+ V+ P +K+ P
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPP----VKRRKSKEATVPK 905
Query: 1847 ASKQDKKTLRRLAGRFL-----------LDGDIL--------------YKRNYDMVLLRC 1881
+ Q+ + + +D DIL Y+R L
Sbjct: 906 PAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLS 965
Query: 1882 VDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYAD 1941
+ E +M +VH+G G+H++G M+ K+ + YYW TM DC +YA++C +CQ++A
Sbjct: 966 IFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAP 1025
Query: 1942 KIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVT 2001
IH P + +S+P+PF W +D+IG + +++ G +++LV DYF+KW+EA +
Sbjct: 1026 LIHQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA----- 1079
Query: 2002 KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAV 2061
I+ +G+ K+ + S+ PQ NG
Sbjct: 1080 -----------ILLNWGI------------------------KVSY--STLRYPQGNGQA 1102
Query: 2062 EAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2120
EAANK I ++K + K W++ L L YRTT R STG TPFSLVYGM+AV+P E+
Sbjct: 1103 EAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAEL 1162
Query: 2121 EIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREF 2180
+P LR EA L+E E D L+ I E+R A+ + Q+YQ ++ KV R F
Sbjct: 1163 NVPGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPF 1221
Query: 2181 KVGELVLKRRI-SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNAD 2237
VG+ VLKR +++ + GK N+EGPY+V + G L ++ + P N +
Sbjct: 1222 FVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNVN 1279
Score = 45.1 bits (105), Expect = 5e-04
Identities = 26/111 (23%), Positives = 49/111 (43%), Gaps = 4/111 (3%)
Query: 181 DKYNGLTCPQNHIVKYVRKMG----NYKDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHT 236
+ YNGL P+ ++ ++ G N D D F ++L A W+T L +
Sbjct: 163 ESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVRYCKLFSENLCGQALMWFTQLEPGSISN 222
Query: 237 FDELATAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARIT 287
F+EL+ F Y + L +LSQ E+ R + +++ ++++
Sbjct: 223 FNELSVVFLKQYSILMDKSISDTDLWNLSQGPNETLRAFITKFKYVLSKLS 273
Score = 39.7 bits (91), Expect = 0.020
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 809 NLWFSEEELPEVGKSHNLALHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLSYRGTPL 868
++ F E+E + +SH+ AL ++++ + +S +L+DTGSS++++ +TL+++ +
Sbjct: 408 SILFDEKETQHLERSHDDALVVTLDVANFEVSRILIDTGSSVDLIFLSTLERMGISRADV 467
Query: 869 RRSTFLVKAFDGSRKNVLGEIDLPITIG 896
R V+ K V E+D + IG
Sbjct: 468 NRRKLGVE----RAKAVNDEVDKLLKIG 491
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 295 bits (756), Expect = 2e-79
Identities = 140/282 (49%), Positives = 198/282 (69%)
Query: 1182 DMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWV 1241
DM G+DP + H++ P V+QK R+ P+ + + EV K +DAG ++ V+YPEW+
Sbjct: 476 DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535
Query: 1242 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQ 1301
AN V V KK+ K R+C+DF DLNKA PKD+FPLPHID +V+ T +++ SFMD FSGYNQ
Sbjct: 536 ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595
Query: 1302 IKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMI 1361
I M +D+EKTSFI GT+CYKVMPFGL N GA YQR + +F + K +EVY+DDM+
Sbjct: 596 IPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDML 655
Query: 1362 VKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 1421
VKST H+++L FE L KY ++LNP KC FGV SG+ LG+IV+++GIE +P ++RA
Sbjct: 656 VKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRA 715
Query: 1422 IREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLR 1463
I ++ +P+ +K+V+ GR+ ++RFI+ T P ++LLR
Sbjct: 716 ILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757
Score = 82.0 bits (201), Expect = 4e-15
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 27/195 (13%)
Query: 784 EQAYVDHEVTVDRFGGIVGNITACNN---------------LW------------FSEEE 816
+Q + D V R I+G +TAC + LW F+ E+
Sbjct: 277 DQQHNDAPVPRRRVNMIMGGLTACRDSFRSIKEYIKSGAATLWSSPATKEMTPLTFTSED 336
Query: 817 LPEVGKSHNLALHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVK 876
L V HN L I ++ ++ +L+DTGSS+NV+ K L ++ ++ S +
Sbjct: 337 LFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLT 396
Query: 877 AFDGSRKNVLGEIDLPITIGPENFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKL 936
FDG+ G I LPI +G F V+D Y+ +LG PWIHD A+ S+ HQ +
Sbjct: 397 GFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCI 456
Query: 937 KFIRNGKLVTVHGEE 951
K + + T+ G +
Sbjct: 457 KIPTSIGIETIRGNQ 471
>At1g37200 hypothetical protein
Length = 1564
Score = 286 bits (733), Expect = 7e-77
Identities = 136/298 (45%), Positives = 200/298 (66%), Gaps = 4/298 (1%)
Query: 1132 PHQEEIELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIV 1191
P + I V I + K+ + +G L+ +++ I L+E D FAWS ++ G+ +
Sbjct: 614 PQKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFAWSSANLQGISLEVT 673
Query: 1192 EHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKD 1251
H++ P P++QK R+ P+ A ++ EV + + G + V+YP+W+AN V V K+
Sbjct: 674 SHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKYPDWLANPVVVKNKN 733
Query: 1252 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 1311
GK R+C+DF DLNKA PKD+FPLPHID LV TA ++ SFMD FSGYNQI M P+D+EK
Sbjct: 734 GKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQILMRPDDQEK 793
Query: 1312 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHV 1371
T+FIT CYKVMPFGL N GATYQR + +F D + K +E+Y+DDM+VKS E+ H+
Sbjct: 794 TAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYIDDMLVKSAHEKDHL 849
Query: 1372 EYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQ 1429
L + F+ L K++++LNP KC+FGV SG+ LG++V+Q+GIE +P ++ A +MP+P+
Sbjct: 850 PQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEANPKQIAAFIDMPSPK 907
Score = 241 bits (614), Expect = 5e-63
Identities = 168/557 (30%), Positives = 259/557 (46%), Gaps = 95/557 (17%)
Query: 1519 DETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIK 1578
D G+K IYY+SK D ET Y +EK A+ +A++LR YL +H ++ PI+
Sbjct: 927 DHEGQKP--IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIR 983
Query: 1579 YIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEE 1638
I + ++A+W + LSEYDI ++T+ + K +LAD + PL D
Sbjct: 984 TILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL----------- 1032
Query: 1639 IMYLKSKDCEEPLINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFE 1698
+G + KW L DG+ N G G G + SP G I + R+ F
Sbjct: 1033 ---------------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFN 1077
Query: 1699 CTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRL 1758
+NN +EYEA I GI+ A MRI+ + + DS LV +Q GE+E ++ Y + + L
Sbjct: 1078 ASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTL 1137
Query: 1759 LTYFTKVELHHIPRDENQMADALATLSSMFR--VNHWNDVPIIKVQRLERPSHVFAI--- 1813
F EL IPR EN DALA L+S V II V+ +E PS +
Sbjct: 1138 TQQFESFELTRIPRGENTSTDALAALASTLDPFVKR-----IIPVEGIEHPSIDLTVKHA 1192
Query: 1814 ------------------------------GDVIDQA----GENVVDYRP-----WYYDI 1834
G ++A E + Y P W I
Sbjct: 1193 GMETSATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPI 1252
Query: 1835 KQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDV 1894
++ PP K + + L+ + R+ + L KR+ + C + + LM +
Sbjct: 1253 IDYIERGITPP--DKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSM 1310
Query: 1895 HDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMS 1954
H+G G+H +G T+ +L DC ++ +C KCQ +A +H PP ++ +S
Sbjct: 1311 HEGQCGSHYSGRTLRCIMLA----------DCIAHSLRCDKCQRHAPTLHQPPEEMSSIS 1360
Query: 1955 SPWPFSMWGIDMIGRIEPKASNGH---RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKN 2011
SP+PF W +D++ +E AS G + +LV DY TKW+E ++ VT++ V F+
Sbjct: 1361 SPYPFMKWSMDVVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLE 1418
Query: 2012 NIICRYGVPSKIITDNG 2028
NI+ R+G+P +I+TDNG
Sbjct: 1419 NIVYRHGIPYEIVTDNG 1435
Score = 50.8 bits (120), Expect = 9e-06
Identities = 34/98 (34%), Positives = 52/98 (52%), Gaps = 2/98 (2%)
Query: 2147 NLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPD-PRGKWTPNY 2205
+ I+E+R AM + Q+YQ ++ + R F+VGELVL++ S + GK N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524
Query: 2206 EGPYVVKKAFSGGALILTHM-DGVELPNPVNADIVKKY 2242
EGPY + + G L + +GV P NA +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
Score = 40.4 bits (93), Expect = 0.012
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 911 ASYSCLLGRPWIHDAGAVTSTLHQKLKFIRNGKLVTVHGEE-----AYLVS-QLTSFSCI 964
A ++ +LGRPW+H AV ST HQ +KF + ++G + Y+ S +L + +
Sbjct: 530 APFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGIAVIYGSQRSSRRCYMGSYELIKKAEL 589
Query: 965 EAGSAEGTAFQGLTIEGAEPKKAGAAMASL 994
E + T+ ++P + G +S+
Sbjct: 590 VVLMIEDKLAEMKTVRSSDPSQCGPQKSSI 619
Score = 31.2 bits (69), Expect = 7.2
Identities = 15/45 (33%), Positives = 28/45 (61%), Gaps = 2/45 (4%)
Query: 810 LWFSEEELPEVGKSHNLALHISVNCKSDLISNVLVDTGSSLNVMP 854
LW E E ++ K H+ A+ I ++ + +S +++DTGSS++ P
Sbjct: 489 LW--ESETTDLDKPHDDAIVIRIDVGNYKLSRIMIDTGSSVDKAP 531
>At4g03800
Length = 637
Score = 275 bits (703), Expect = 2e-73
Identities = 138/337 (40%), Positives = 215/337 (62%), Gaps = 21/337 (6%)
Query: 1183 MPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 1242
MP +DP I+ H++ P P++QK R+ + A + ++ K + G + V+YP+WVA
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380
Query: 1243 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1302
V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV++TA +++ +FMD F GYNQI
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440
Query: 1303 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1362
M+PED+EKTSFIT + GATYQ + +F++ + K +EV +DD +V
Sbjct: 441 MMNPEDQEKTSFIT---------------DRGATYQWLVNKMFNEHLRKTMEVSIDDTLV 485
Query: 1363 KSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1422
KS +E HV++L + FE L +Y+++LN KCTFGV SG+ LG+IV+++GIE +P+++ A
Sbjct: 486 KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 545
Query: 1423 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 1482
+ P+ + K+V+ GR+ S T P +++L+ N +W+++C+EAF +K
Sbjct: 546 LKTPSLRNFKEVQRLTGRI------ASRSTDKSLPFYQILKGNNGFLWDEKCEEAFRQLK 599
Query: 1483 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQD 1519
YL PP+L P L +Y+ V + ++ VL ++D
Sbjct: 600 AYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636
Score = 77.8 bits (190), Expect = 7e-14
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 14/144 (9%)
Query: 807 CNNLWFSEEELPEVGKSHNLALHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLSYRGT 866
C+++ F EEE + + H+ AL I+++ + IS +LVDTGSS++++ + G
Sbjct: 182 CSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLI---------FLGP 232
Query: 867 PLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLITFQVMDINASYSCLLGRPWIHDAG 926
P + AF LG I LP+ G + ++ F V D A+Y+ +LG PWI
Sbjct: 233 PSP-----LVAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMK 287
Query: 927 AVTSTLHQKLKFIRNGKLVTVHGE 950
AV ST HQ LKF + + T+ G+
Sbjct: 288 AVPSTYHQWLKFPTSNGVETIWGD 311
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 272 bits (696), Expect = 1e-72
Identities = 182/558 (32%), Positives = 274/558 (48%), Gaps = 68/558 (12%)
Query: 1735 NQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWN 1794
N+ GE+E A + Y + R + F + EL IPR EN A+ALA L+S F V
Sbjct: 790 NRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALASTFEVTLPR 849
Query: 1795 DVPIIKVQ----RLERPSHVFA------------------------IGDVI--------- 1817
+P+ + RL+ S V I D +
Sbjct: 850 VIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHPTEIVENQ 909
Query: 1818 ---DQAGENVVDYRP------WYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDI 1868
D + D P W I+ ++L+ P A K + L+ RF + DI
Sbjct: 910 SLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLP--AEKWAARKLKATCARFCIANDI 967
Query: 1869 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQ 1928
LY+R + C+ + +M +VHDGT G H G +++ K+ + GYYW T+ DC
Sbjct: 968 LYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEA 1027
Query: 1929 YARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1988
YARKC +CQ +A I P L +S+P+PF W +D++G +
Sbjct: 1028 YARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS--------------- 1072
Query: 1989 TKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 2048
T+ VEAA+Y+N+T V FI +IICR+G+P +I+TDNG+ + + CEE++I
Sbjct: 1073 TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLS 1132
Query: 2049 NSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFS 2107
+S+P PQ NG EA NK I ++K + YK W L L RTT R +T TPFS
Sbjct: 1133 HSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFS 1192
Query: 2108 LVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARM 2167
L+YGMEAV+P E+++PS R I + +E E + D ++ I+E+R A+AR Q+Y
Sbjct: 1193 LIYGMEAVIPAEIKVPSARRIRNPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAG 1251
Query: 2168 KTAFDKKVHPREFKVGELVLKRRISQQPDPR--GKWTPNYEGPYVVKKAFSGGALILTHM 2225
++ V R F+VG LVL RR+ Q + GK ++EGPY + G L +M
Sbjct: 1252 ARYYNSNVRNRSFEVGTLVL-RRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINM 1310
Query: 2226 DGVELPNPVNADIVKKYF 2243
+G + N+ +K+++
Sbjct: 1311 EGKTVRRAWNSMHLKRFY 1328
Score = 173 bits (438), Expect = 1e-42
Identities = 84/151 (55%), Positives = 107/151 (70%)
Query: 1183 MPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 1242
M G+ ++ H++ P PV+QK R+ PD A + EV + ++ G + V+YPEW+A
Sbjct: 412 MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471
Query: 1243 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1302
N V V KK+GK R+CVDF DLNKA KD FPLPHID LV++T ++ SFMD FSGYNQI
Sbjct: 472 NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531
Query: 1303 KMSPEDREKTSFITPWGTFCYKVMPFGLINA 1333
M+PED+EKTSFIT GT+ YKVMPFGL NA
Sbjct: 532 LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562
Score = 85.5 bits (210), Expect = 3e-16
Identities = 43/146 (29%), Positives = 84/146 (57%), Gaps = 10/146 (6%)
Query: 1469 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAI 1528
+WN+ C+EAF +K YL EP +L G L +Y+AV + ++ V + + + K+ I
Sbjct: 630 IWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRVERSDKR--PI 687
Query: 1529 YYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTG 1588
+Y+ +TRY M+EK A+ AA++LR Y +H +++ + P++ I +G
Sbjct: 688 FYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSG 739
Query: 1589 KIARWQMLLSEYDIVFKTQKAIKGSI 1614
++ +W + LSE+D+ F+ + ++ ++
Sbjct: 740 RLGKWAIELSEFDLEFRARTSLNSTM 765
Score = 46.2 bits (108), Expect = 2e-04
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 848 SSLNVMPKTTLDQLSYRGTPLRR---STFLVKAFDGSRKNVLGEIDLPITIGPENFLITF 904
S+ N PK + + T LR+ T + S LG + LP+T ++ F
Sbjct: 314 SASNAAPKAPQPATTKKPTELRKPAAGTCTTMLCETSMS--LGTVVLPVTAQGVVKMVEF 371
Query: 905 QVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKF 938
V D A+Y+ +LG PW+++ V ST HQ +KF
Sbjct: 372 TVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKF 405
Score = 43.9 bits (102), Expect = 0.001
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 141 AKELRREIKANRGNGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKM 200
A E+ + I+A R +T +SK+ + ++F+ + YNG + H+ +
Sbjct: 143 APEVEKVIEATR------RTPFTPRISKLRI-REFRDFKLPVYNGKGDLKEHLTSFQVIA 195
Query: 201 GNYK----DNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKP 256
G + D+ + F ++L A W+T L + + F +L+TAF Y +
Sbjct: 196 GRVPLEPHEEDAGLCKLFSENLFGLALTWFTQLEEGSIDNFKQLSTAFIKQYEYFINSDI 255
Query: 257 NREFLRSLSQKKEESFREYAQRWRG 281
L + SQ +E R Y R +G
Sbjct: 256 TEAHLWNFSQSADEPLRTYIYRVQG 280
>At2g10780 pseudogene
Length = 1611
Score = 266 bits (681), Expect = 8e-71
Identities = 161/477 (33%), Positives = 253/477 (52%), Gaps = 24/477 (5%)
Query: 1136 EIELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGL-DPMIVEHQ 1194
E L I T+E +GA+ E K I ++ E+ D+FA P DP +E
Sbjct: 605 EAYLATITTKE------VGASAE----LKDIPIVNEFSDVFAAVSGVPPDRSDPFTIE-- 652
Query: 1195 IPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV 1254
+P P+ + R P K+K ++++ +D GF+ P W A ++ V KKDG
Sbjct: 653 --LEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSF 709
Query: 1255 RMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSF 1314
R+C+D+R LNK + K+ +PLP ID L+D ++ FS +D SGY+QI + P D KT+F
Sbjct: 710 RLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAF 769
Query: 1315 ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYL 1374
T + F + VMPFGL NA A + + M +F D + + V ++++D++V S E H E+L
Sbjct: 770 RTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHL 829
Query: 1375 TKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQV 1434
+ ERLR+++L +KC+F RS LG ++S +G+ VDP+K+R+I+E P P+ ++
Sbjct: 830 RAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEI 889
Query: 1435 RGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPP 1494
R FLG Y RF+ + P+ +L K+ W+DEC+++F +K L P+LV P
Sbjct: 890 RSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLP 949
Query: 1495 VEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAW 1554
EG P +Y +GCVL Q K I Y S++ E Y + A+ +
Sbjct: 950 EEGEPYTVYTDASIVGLGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVF 1003
Query: 1555 AAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEY--DIVFKTQKA 1609
K R YL + + +KYIF + + + RW L+++Y DI + KA
Sbjct: 1004 FLKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKA 1060
Score = 97.1 bits (240), Expect = 1e-19
Identities = 102/482 (21%), Positives = 199/482 (41%), Gaps = 45/482 (9%)
Query: 1765 VELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENV 1824
+++ + P NQ+ADAL+ S + V ++ + HV A+ ++ G
Sbjct: 1051 LDIAYHPGKANQVADALSRRRSEVEAER-SQVDLVNMMGT---LHVNALSKEVEPLGLGA 1106
Query: 1825 VDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLA-GRFLLDGDILYKRNYDMVLLRCVD 1883
D I+ E G ++ +K + G +++G + CV
Sbjct: 1107 ADQADLLSRIRLAQERDEEIKGWAQNNKTEYQTSNNGTIVVNGRV------------CVP 1154
Query: 1884 EHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYAD 1941
A E+++ + H F H + M R L R Y+W+ M+ D ++ KC CQ+
Sbjct: 1155 NDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKA 1213
Query: 1942 KIHVPPHALNVMSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 2000
+ VP L + P W + +D + + + H + V +D TK + ++
Sbjct: 1214 EHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDK 1273
Query: 2001 T-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNG 2059
+++A+ + I+ +G+P I++D T + +A + + S+ Y PQ +
Sbjct: 1274 DGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDE 1333
Query: 2060 AVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPL 2118
E + ++ +++ V + +W + L Y + ++S G +P+ +YG PL
Sbjct: 1334 QSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPL 1393
Query: 2119 EVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPR 2178
+ E +L +++ ++ K +A R +SY +K+
Sbjct: 1394 -----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYA-------NKRRKEL 1441
Query: 2179 EFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPV 2234
EF+VG+LV + ++ + R K +P Y GPY V + A L +LP +
Sbjct: 1442 EFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKL------DLPPKL 1495
Query: 2235 NA 2236
NA
Sbjct: 1496 NA 1497
Score = 32.3 bits (72), Expect = 3.2
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 209 LMIHYFQDSLMEDAAEWYTSLSK---DDVHTFDELATAFKSHYGFNTRLKPNREFLRSLS 265
+ +H+ + DA W+ ++ K D+V +F + F Y F E
Sbjct: 215 IAVHFLEG----DAHNWWLTVEKRRGDEVRSFADFEDEFNKKY-FPPEAWDRLECAYLDL 269
Query: 266 QKKEESFREYAQRWRGAAARITPALDEEE-MTQTFLKTLKKDYVERMIIAAPNNFSEMVT 324
+ + REY + + + L+EE+ + F++ L+ + ++ N+ SE+V
Sbjct: 270 VQGNRTVREYDEEFNRLRRYVGRELEEEQAQLRRFIRGLRIEIRNHCLVRTFNSVSELVE 329
Query: 325 MGTRLEEAVRD 335
+EE + +
Sbjct: 330 RAAMIEEGIEE 340
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 266 bits (679), Expect = 1e-70
Identities = 156/497 (31%), Positives = 252/497 (50%), Gaps = 49/497 (9%)
Query: 1165 IIQLLREYPDIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQ 1224
+I L +Y +S +D+ G+ P + H+I + E + RR +P++ +K E+
Sbjct: 861 LITELMKYRKAIGYSLDDIKGISPTLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEIL 920
Query: 1225 KQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDFRDLNKA 1266
K +DAG + + WV+ + VPKK G RMC+++R LN A
Sbjct: 921 KLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVA 980
Query: 1267 SPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVM 1326
S K++FPLP ID +++ A + F+D +SG+ QI + P D+ KT+F P+GTF YK M
Sbjct: 981 SRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRM 1040
Query: 1327 PFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKL 1386
PFGL NA AT+QR MT++F D+I + VEV++DD V + + L ++ +R + L
Sbjct: 1041 PFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNL 1100
Query: 1387 RLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISR 1446
LN KC F VR G +LG +S++GIEVD K+ + ++ P+T K +R FLG +
Sbjct: 1101 VLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRI 1160
Query: 1447 FISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAV 1506
FI + P+ +LL K ++DEC AF IK L+ PI+ P P +
Sbjct: 1161 FIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEII--- 1217
Query: 1507 FDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNH 1566
D + RY EK A+ +A ++ R YLV
Sbjct: 1218 ---------------------------TMDDAQVRYATTEKELLAVVFAFEKFRSYLVGS 1250
Query: 1567 TTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDD 1626
+ + +++I+ K ++ RW +LL E+D+ +K I+ + ADHL+ ++D
Sbjct: 1251 KVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGV-ADHLSRMRIED 1309
Query: 1627 YQPIEFDFPDEEIMYLK 1643
I+ P+E++M ++
Sbjct: 1310 EVLIDDSMPEEQLMAIQ 1326
Score = 202 bits (515), Expect = 1e-51
Identities = 143/419 (34%), Positives = 208/419 (49%), Gaps = 43/419 (10%)
Query: 1829 PWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAE 1888
PWY D +L+S E PP S +KK + F D LY D + CV E E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 1889 QLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPP 1947
++ H +G H AT TMS K+L+AG++W +M D ++ KC +
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMS-KILQAGFWWPSMFKDAQEFISKCDSFE---------- 1442
Query: 1948 HALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEA-ASYTNVTKQVVA 2006
F +WGID +G +S G+++ILVAIDY +KWVEA AS+TN +VV
Sbjct: 1443 ----------NFDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTN-DARVVL 1489
Query: 2007 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 2066
K K I R+GVP +I+D G + N + L ++ ++H S G VE +N+
Sbjct: 1490 KLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNR 1541
Query: 2067 NIKRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2125
IK I++K V +T KDW L L YRT ++ G TPF+L+YG LP+E+E ++
Sbjct: 1542 EIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAM 1601
Query: 2126 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGEL 2185
+ + R QLN + + R++A + Y+ R K+ DKK+ R+FKVG+
Sbjct: 1602 WAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661
Query: 2186 VL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2242
VL R+ P GK + GP+ V GA+ L +G VN +KKY
Sbjct: 1662 VLLFNSRLRLFP---GKLKSRWSGPFSVTAVRPYGAITLAGKNG---DFTVNGQRLKKY 1714
Score = 40.8 bits (94), Expect = 0.009
Identities = 64/309 (20%), Positives = 110/309 (34%), Gaps = 62/309 (20%)
Query: 181 DKYNGLTC--PQNHIVKYVRKMGNYKDN----DSLMIHYFQDSLMEDAAEWYTSLSKDDV 234
+K++GL P +H+ ++ R K N D + F SL + A +W SL + +
Sbjct: 52 NKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSI 111
Query: 235 HTFDELATAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARIT--PALDE 292
++++ AF + + N+R R + +Q E+F E +R++G + L +
Sbjct: 112 TSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNETFYEAWERFKGYQTQCPHHEMLLD 171
Query: 293 EEMTQTFLKTLKKD--YVERMIIAAPNNFS-------------------EMVTMGTRLEE 331
FL +D V + + N++ EM M +L++
Sbjct: 172 TASNGNFLNKDVEDGWEVVENLAQSDGNYNEDYDRSIRTSSDSDEKHRREMKAMNDKLDK 231
Query: 332 ------------------AVRDGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAG 373
V+DG + + S V Y G + K+ +
Sbjct: 232 LLLMQQKHIHFLGDDETLQVQDGETLQLEEVSYVQNQGGYNKGFNNFKQNHPNLSYRSTN 291
Query: 374 QAMATVAPINAAQMPPSYPYMPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 433
A + Q P++PY+Q GQ VP +QQLP
Sbjct: 292 VANRQDQVYPSQQQNQPKPFVPYNQ---------------GQGYVPKQQYQGNYQQQLPP 336
Query: 434 QQQQQQQQQ 442
QQQQQ
Sbjct: 337 PGFTQQQQQ 345
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 263 bits (672), Expect = 9e-70
Identities = 150/456 (32%), Positives = 246/456 (53%), Gaps = 13/456 (2%)
Query: 1166 IQLLREYPDIFAWSYEDMPGLDPMIVE-HQIPTKPECPPVRQKLRRTHPDMALKIKSEVQ 1224
I++++E+ D+F + + GL P + I +P P+ + R P ++K +++
Sbjct: 457 IRVVQEFQDVF----QSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLK 512
Query: 1225 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNT 1284
+ GF+ P W A ++ V KKDG R+C+D+R+LN+ + K+ +PLP ID L+D
Sbjct: 513 DLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQL 571
Query: 1285 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1344
+ FS +D SGY+QI ++ D KT+F T +G F + VMPFGL NA A + R M ++
Sbjct: 572 RGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSV 631
Query: 1345 FHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 1404
F + + + V +++DD++V S E+ +L ++ E+LR+ KL +KC+F R LG
Sbjct: 632 FQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLG 691
Query: 1405 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1464
IVS +G+ VDP+K+ AIR+ P P ++R FLG Y RF+ + P+ KL K
Sbjct: 692 HIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGK 751
Query: 1465 NQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKK 1524
+ P VW+ EC+E F S+K L P+L P G+P ++Y +GCVL Q +
Sbjct: 752 DVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGK---- 807
Query: 1525 EHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKA 1584
I Y S++ E Y + A+ +A K R YL + + +KYIF +
Sbjct: 808 --VIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQP 865
Query: 1585 AVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1620
+ + RW L+++YD+ K +++ D L+
Sbjct: 866 ELNLRQRRWMELVADYDLEIAYHPG-KANVVVDALS 900
Score = 32.0 bits (71), Expect = 4.2
Identities = 28/113 (24%), Positives = 50/113 (43%), Gaps = 10/113 (8%)
Query: 1913 LRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSP-WPFSMWGIDMIGRIE 1971
L+ Y W+ M+ D + +C CQ+ + V L + P W + +D++ +
Sbjct: 965 LKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLV--VG 1022
Query: 1972 PKASNGHRFILVAIDYFTKWVEAASYTNVTK----QVVAKFIKNNIICRYGVP 2020
+ S I V +D TK +A + + K V+AK + I+ +GVP
Sbjct: 1023 LRVSRTKDAIWVIVDRLTK---SAHFLAIRKTDGAAVLAKKFVSEIVKLHGVP 1072
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 259 bits (661), Expect = 2e-68
Identities = 149/456 (32%), Positives = 244/456 (52%), Gaps = 13/456 (2%)
Query: 1166 IQLLREYPDIFAWSYEDMPGLDPMIVE-HQIPTKPECPPVRQKLRRTHPDMALKIKSEVQ 1224
I++++E+ D+F + + GL P + I +P P+ + R P ++K +++
Sbjct: 483 IRVIQEFEDVF----QSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLE 538
Query: 1225 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNT 1284
+ GF+ P W A ++ V KKDG R+C+D+R LN + K+ +PLP ID L+D
Sbjct: 539 DLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQL 597
Query: 1285 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1344
+ FS +D SGY+QI ++ D KT+F T +G F + VMPF L NA A + R M ++
Sbjct: 598 RGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSV 657
Query: 1345 FHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 1404
F + + + V +++DD++V S E+H +L ++ E+LR+ KL +KC+F R LG
Sbjct: 658 FQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLG 717
Query: 1405 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1464
IVS +G+ VDP+K+ AIR+ P P ++R FL Y RF+ + P+ KL K
Sbjct: 718 HIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGK 777
Query: 1465 NQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKK 1524
+ P VW+ EC+E F S+K L P+L P G+P ++Y +GCVL Q+ +
Sbjct: 778 DVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGK---- 833
Query: 1525 EHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKA 1584
I Y S++ E Y + + +A K R YL + + +KYIF +
Sbjct: 834 --VIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQP 891
Query: 1585 AVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1620
+ + RW L+++YD+ K +++AD L+
Sbjct: 892 ELNLRQMRWMELVADYDLEIAYHPG-KANVVADALS 926
Score = 77.0 bits (188), Expect = 1e-13
Identities = 76/336 (22%), Positives = 136/336 (39%), Gaps = 57/336 (16%)
Query: 1883 DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADK 1942
DE +++ + H F H M R L R Y W+ M+ D + +C CQ+ +
Sbjct: 1012 DEELRREILSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQLVKAE 1070
Query: 1943 IHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTK 2002
VP ++W V +D TK +A + + K
Sbjct: 1071 HQVPD------------AIW--------------------VIMDRLTK---SAHFLAIRK 1095
Query: 2003 Q----VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMN 2058
V+AK + I+ +GVP I++D + +A + + S+ Y PQ +
Sbjct: 1096 TDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTD 1155
Query: 2059 GAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 2117
G E + ++ +++ V + W + L Y + ++S G PF +YG P
Sbjct: 1156 GQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTP 1215
Query: 2118 LEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHP 2177
L + E + A++ Q +++ +++ +A AR +SY DK+
Sbjct: 1216 LR-----WTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYA-------DKRRRE 1263
Query: 2178 REFKVGELV-LKRRISQQPDP---RGKWTPNYEGPY 2209
EF+VG+ V LK + + P+ K +P Y GP+
Sbjct: 1264 LEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPF 1299
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 251 bits (641), Expect = 3e-66
Identities = 149/430 (34%), Positives = 233/430 (53%), Gaps = 22/430 (5%)
Query: 1136 EIELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGL-DPMIVEHQ 1194
E L I T+E +GA+ E K I ++ E+ D+FA P DP +E
Sbjct: 100 EAYLATITTKE------VGASAE----LKDILIVNEFSDVFAAVSGVPPDRSDPFTIE-- 147
Query: 1195 IPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV 1254
+P P+ + R P ++K ++++ + GF+ P W A ++ V KKDG
Sbjct: 148 --LEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGSF 204
Query: 1255 RMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSF 1314
R+C+D+R LNK + K+ +PLP ID L+D ++ FS +D SGY+QI + P D KT+F
Sbjct: 205 RLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAF 264
Query: 1315 ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYL 1374
T +G F + VMPFGL NA A + + M +F D + + V +++DD++V S E H E+L
Sbjct: 265 RTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHL 324
Query: 1375 TKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQV 1434
+ ERLR+++L +K +F RS LG ++S +G+ VDP+K+R+I+E P P+ ++
Sbjct: 325 RAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEI 384
Query: 1435 RGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPP 1494
R FLG Y RF+ + P+ +L K+ W+DEC+++F +K L+ P+LV P
Sbjct: 385 RSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLP 444
Query: 1495 VEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAW 1554
EG P +Y +GCVL Q K I Y S++ E Y + A+ +
Sbjct: 445 EEGEPYTVYTDASIVGLGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVF 498
Query: 1555 AAKRLRHYLV 1564
A K R YL+
Sbjct: 499 ALKIWRSYLI 508
Score = 100 bits (249), Expect = 1e-20
Identities = 79/340 (23%), Positives = 149/340 (43%), Gaps = 22/340 (6%)
Query: 1881 CVDEHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQI 1938
CV A E+++ + H F H + M R L R Y+W+ M D ++ KC CQ+
Sbjct: 544 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQL 602
Query: 1939 YADKIHVPPHAL-NVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1997
+ VP L N+ S W + +D + R+ + H + V +D TK +
Sbjct: 603 VKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAI 662
Query: 1998 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 2056
++ +++A+ + I+ +G+P I++D T + A + + S+ Y PQ
Sbjct: 663 SDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQ 722
Query: 2057 MNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2115
+G E + ++ +++ V + +W + L Y + ++S G +P+ +YG
Sbjct: 723 TDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACR 782
Query: 2116 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKV 2175
PL + E +L +++ ++ K +A R +SY +K+
Sbjct: 783 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYA-------NKRR 830
Query: 2176 HPREFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVV 2211
EF+VG+LV + ++ + R K +P Y GPY V
Sbjct: 831 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
>At3g11970 hypothetical protein
Length = 1499
Score = 250 bits (638), Expect = 8e-66
Identities = 155/467 (33%), Positives = 250/467 (53%), Gaps = 15/467 (3%)
Query: 1156 TLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEH--QIPTKPECPPVRQKLRRTHP 1213
T E G + + ++L EYPDIF + L P +H +I PV Q+ R
Sbjct: 556 TSELGEESVVEEVLNEYPDIFI----EPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSI 611
Query: 1214 DMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFP 1273
+I V+ + G + P + + +V V KKDG R+CVD+R+LN + KD+FP
Sbjct: 612 HQKNEIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFP 670
Query: 1274 LPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINA 1333
+P I+ L+D + +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA
Sbjct: 671 IPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNA 730
Query: 1334 GATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKC 1393
AT+Q M +F + K V V+ DD++V S+ E+H ++L ++FE +R KL +KC
Sbjct: 731 PATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKC 790
Query: 1394 TFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTA 1453
F V + LG +S +GIE DP K++A++E P P T KQ+RGFLG Y RF+
Sbjct: 791 AFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGV 850
Query: 1454 TCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGC 1513
GP+ L K W Q+AF+ +K L + P+L P+ + ++ + +G
Sbjct: 851 IAGPL-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGA 909
Query: 1514 VLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISR 1573
VL Q+ H + Y+S++ + ++ EK A+ +A ++ RHYL+ + +
Sbjct: 910 VLMQEG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTD 963
Query: 1574 MDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1620
+KY+ E+ T +W L E+D + ++ K +++AD L+
Sbjct: 964 QRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009
Score = 82.4 bits (202), Expect = 3e-15
Identities = 86/327 (26%), Positives = 138/327 (41%), Gaps = 25/327 (7%)
Query: 1894 VHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVM 1953
+H G H+ G ++ + ++ +YW M D Y R C CQ P L +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 1954 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKN 2011
P P ++W + IE S G I+V +D +K + ++ + VA +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLD 1204
Query: 2012 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRI 2071
N+ +G P+ I++D + + + +S Y PQ +G E N+ ++
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264
Query: 2072 VQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 2130
++ M W + L A + Y T SS+ TPF +VYG V P V +P L E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318
Query: 2131 AKLS-EAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-- 2187
+K++ A Q R D L ++ M A Q RMK D+ REF++G+ V
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 2188 ---KRRISQQPDPRGKWTPNYEGPYVV 2211
R+ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 250 bits (638), Expect = 8e-66
Identities = 154/501 (30%), Positives = 253/501 (49%), Gaps = 25/501 (4%)
Query: 1123 LEQEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYED 1182
L+ + + + E LV G + I A E + +K + E+ D+F +
Sbjct: 401 LDCHRGRVSFERPEGSLVYQGVRPTSGSLVISAVQAEKMIEKGCEAYLEFEDVF----QS 456
Query: 1183 MPGLDPMIVE-HQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWV 1241
+ GL P + I +P P+ + R P ++K +++ + A L
Sbjct: 457 LQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGAPVLF-------- 508
Query: 1242 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQ 1301
V KKDG R+C+D+R LN + K+ +PLP ID L+D + FS +D SGY+
Sbjct: 509 -----VKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHL 563
Query: 1302 IKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMI 1361
I ++ D KT+F T +G F + VMPFGL NA A + R M ++F +++ + V +++DD++
Sbjct: 564 IPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDIL 623
Query: 1362 VKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 1421
V S E+H +L ++ E+LR+ KL +KC+F R LG IVS +G+ VDP+K+ A
Sbjct: 624 VYSKSLEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEA 683
Query: 1422 IREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSI 1481
IR+ P ++R FLG Y RF+ + P+ KL K+ P VW+ EC+E F S+
Sbjct: 684 IRDWHTPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSL 743
Query: 1482 KNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETR 1541
K L P+L P G P ++Y +GCVL Q+ + I Y S++ E
Sbjct: 744 KEMLTSTPVLALPEHGEPYMVYTDASGVGLGCVLMQRGK------VIAYASRQLRKHEGN 797
Query: 1542 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1601
Y + A+ +A K R YL + + +KYIF + + + +W L+++YD
Sbjct: 798 YPTHDLEMAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYD 857
Query: 1602 IVFKTQKAIKGSILADHLAYQ 1622
+ K +++AD L+++
Sbjct: 858 LEIAYHPG-KANVVADALSHK 877
Score = 70.1 bits (170), Expect = 1e-11
Identities = 70/295 (23%), Positives = 124/295 (41%), Gaps = 27/295 (9%)
Query: 1925 DCYQYARKCHKCQIYADKIHVPPHALNVMSSP-WPFSMWGIDMIGRIEPKASNGHRFILV 1983
D + +C CQ+ + VP L + P W + ID + + S I V
Sbjct: 942 DVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFV--VGLPVSRTKDAIWV 999
Query: 1984 AIDYFTKWVEAASYTNVTKQ----VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQAL 2039
+D TK +A + + K V+AK + I+ +GVP I++D + + +A
Sbjct: 1000 IVDRLTK---SAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAF 1056
Query: 2040 CEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVR 2098
E + S+ Y PQ G E + ++ +++ V + W + L Y +
Sbjct: 1057 QAEMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYP 1116
Query: 2099 SSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMA 2158
+S G PF +Y PL L + E + A++ Q +++ +++ +A
Sbjct: 1117 ASIGMAPFEALYERPCRTPL-----CLTQVGERSIYGADYVQETTERIRVLKLNMKEAQD 1171
Query: 2159 RGQSYQARMKTAFDKKVHPREFKVGELV-LKRRISQQPD---PRGKWTPNYEGPY 2209
R +SY DK+ EF+VG+ V LK + + P+ K +P Y GP+
Sbjct: 1172 RQRSYA-------DKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPF 1219
>At1g36590 hypothetical protein
Length = 1499
Score = 250 bits (638), Expect = 8e-66
Identities = 155/467 (33%), Positives = 250/467 (53%), Gaps = 15/467 (3%)
Query: 1156 TLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEH--QIPTKPECPPVRQKLRRTHP 1213
T E G + + ++L EYPDIF + L P +H +I PV Q+ R
Sbjct: 556 TSELGEESVVEEVLNEYPDIFI----EPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSI 611
Query: 1214 DMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFP 1273
+I V+ + G + P + + +V V KKDG R+CVD+R+LN + KD+FP
Sbjct: 612 HQKNEIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFP 670
Query: 1274 LPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINA 1333
+P I+ L+D + +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA
Sbjct: 671 IPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNA 730
Query: 1334 GATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKC 1393
AT+Q M +F + K V V+ DD++V S+ E+H ++L ++FE +R KL +KC
Sbjct: 731 PATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKC 790
Query: 1394 TFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTA 1453
F V + LG +S +GIE DP K++A++E P P T KQ+RGFLG Y RF+
Sbjct: 791 AFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGV 850
Query: 1454 TCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGC 1513
GP+ L K W Q+AF+ +K L + P+L P+ + ++ + +G
Sbjct: 851 IAGPL-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGA 909
Query: 1514 VLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISR 1573
VL Q+ H + Y+S++ + ++ EK A+ +A ++ RHYL+ + +
Sbjct: 910 VLMQEG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTD 963
Query: 1574 MDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1620
+KY+ E+ T +W L E+D + ++ K +++AD L+
Sbjct: 964 QRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009
Score = 77.8 bits (190), Expect = 7e-14
Identities = 85/327 (25%), Positives = 138/327 (41%), Gaps = 25/327 (7%)
Query: 1894 VHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVM 1953
+H G H+ G ++ + ++ +Y M D Y R C CQ P L +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 1954 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKN 2011
P P ++W + IE S G I+V +D +K + ++ + VA+ +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLD 1204
Query: 2012 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRI 2071
N+ +G P+ I++D + + + +S Y PQ +G E N+ ++
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264
Query: 2072 VQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 2130
++ M W + L A + Y T SS+ TPF +VYG V P V +P L E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318
Query: 2131 AKLS-EAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-- 2187
+K++ A Q R D L ++ M A Q RMK D+ REF++G+ V
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 2188 ---KRRISQQPDPRGKWTPNYEGPYVV 2211
R+ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At1g35370 hypothetical protein
Length = 1447
Score = 240 bits (613), Expect = 6e-63
Identities = 160/497 (32%), Positives = 262/497 (52%), Gaps = 20/497 (4%)
Query: 1125 QEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGVKQKIIQ-LLREYPDIFAWSYEDM 1183
Q+ +A Q + + + ++E + I A + V++ ++Q ++ E+PD+FA +
Sbjct: 503 QKTQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEPTDLP 562
Query: 1184 PGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVAN 1243
P + +H+I PV Q+ R +I VQ I +G + P + +
Sbjct: 563 PFREKH--DHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSP-FASP 619
Query: 1244 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIK 1303
+V V KKDG R+CVD+ +LN + KD F +P I+ L+D S VFS +D +GY+Q++
Sbjct: 620 VVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVR 679
Query: 1304 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 1363
M P+D +KT+F T G F Y VM FGL NA AT+Q M ++F D + K V V+ DD+++
Sbjct: 680 MDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIY 739
Query: 1364 STDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 1423
S+ E+H E+L +FE +R +KL F S + LG +S + IE DP K++A++
Sbjct: 740 SSSIEEHKEHLRLVFEVMRLHKL--------FAKGSKEHLGHFISAREIETDPAKIQAVK 791
Query: 1424 EMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKN 1483
E P P T KQVRGFLG Y RF+ + GP+ L K W+ E Q AFD++K
Sbjct: 792 EWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPL-HALTKTDGFCWSLEAQSAFDTLKA 850
Query: 1484 YLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYT 1543
L P+L PV + ++ E+ C G + +K H + Y+S++ + +
Sbjct: 851 VLCNAPVLALPVFDKQFMV------ETDACGQGIRAVLMQKGHPLAYISRQLKGKQLHLS 904
Query: 1544 MLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIV 1603
+ EK A +A ++ RHYL+ + + +KY+ E+ T +W L E+D
Sbjct: 905 IYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYE 964
Query: 1604 FKTQKAIKGSILADHLA 1620
+ ++ K +++AD L+
Sbjct: 965 IQYRQG-KENLVADALS 980
Score = 85.1 bits (209), Expect = 4e-16
Identities = 87/347 (25%), Positives = 148/347 (42%), Gaps = 26/347 (7%)
Query: 1904 TGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWG 1963
+G S + +++ +YW M D + R C CQ P L + P P +W
Sbjct: 1068 SGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL--PIPDKIWC 1125
Query: 1964 IDMIGRIEPKASNGHR-FILVAIDYFTKWVEAASYTN-VTKQVVAKFIKNNIICRYGVPS 2021
+ IE ++G + I+V +D +K + + + VA+ +N+ +G P+
Sbjct: 1126 DVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPT 1185
Query: 2022 KIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD 2081
I++D ++ + + +E SS Y PQ +G E N+ ++ ++ M
Sbjct: 1186 SIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPH 1245
Query: 2082 -WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQ 2140
W++ LP A + Y T SS+ TPF LVYG + L +V + A+ Q
Sbjct: 1246 LWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARS-----LQ 1300
Query: 2141 SRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-----KRRISQQP 2195
R + L ++ M A Q RMK D+ R F +G+ V R+ S
Sbjct: 1301 ERENMLLFLKFHLMRA-------QHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVL 1353
Query: 2196 DPRGKWTPNYEGPY-VVKKAFSGGALILTHMDGVELPNPVNADIVKK 2241
K +P Y GPY +++K G ++ +LP+ V DI +K
Sbjct: 1354 RVNQKLSPKYFGPYKIIEKC--GEVMVGNVTTSTQLPS-VLPDIFEK 1397
>At2g14040 putative retroelement pol polyprotein
Length = 841
Score = 234 bits (597), Expect = 4e-61
Identities = 148/470 (31%), Positives = 230/470 (48%), Gaps = 77/470 (16%)
Query: 1169 LREYPDIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQID 1228
LR+Y +S +D+ G+ P + H I + E + RR + ++ +K E+ K +D
Sbjct: 340 LRKYRKALGYSLDDITGISPTLCMHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLD 399
Query: 1229 AGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDFRDLNKASPKD 1270
AG + + WV+ + VPKK G + RMC+D+R LN A+ KD
Sbjct: 400 AGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKD 459
Query: 1271 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1330
NFPL ID +++ + + F+DG+ G+ QI + P+D+EKT+F P+GTF Y+ MPFGL
Sbjct: 460 NFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGL 519
Query: 1331 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 1390
NA AT+Q M +F DMI +EV++DD +V E++H L LN
Sbjct: 520 CNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKH---------------LVLNW 564
Query: 1391 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1450
K F VR G +LG +S+KG+EVD K+ +R FLG + RFI
Sbjct: 565 EKSHFMVRDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGHAGFYRRFIKD 611
Query: 1451 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1510
+ P +LL K Q ++D C +AF+ +K L+ I+ PP P + D
Sbjct: 612 FSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVICDASDYV 671
Query: 1511 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 1570
+G VLGQ+ + KK HAIYY S+ + ++ HT
Sbjct: 672 VGAVLGQRKD--KKLHAIYYASRTLDGAQ-----------------------VIVHTVHA 706
Query: 1571 ISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1620
++Y+ K ++ RW +LL ++D+ K +K I+ + AD+L+
Sbjct: 707 -----ALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEV-ADNLS 750
>At2g06320 putative retroelement pol polyprotein
Length = 466
Score = 206 bits (523), Expect = 2e-52
Identities = 145/440 (32%), Positives = 219/440 (48%), Gaps = 16/440 (3%)
Query: 1810 VFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDIL 1869
+F+IG Q V PWY D +L PP + ++K R + D L
Sbjct: 20 LFSIGKEFHQLNA-VEGGSPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYL 78
Query: 1870 YKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMTMEHDCYQ 1928
Y D + V E E E ++ HD +G H AT T+S K+L+AG++W TM D +
Sbjct: 79 YTLCKDKIYRSYVSEDEVEGILLHCHDSAYGGHFATFKTVS-KILQAGFWWPTMFKDAQE 137
Query: 1929 YARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1988
+ KC CQ + N + F +WGID +G +S G+++ILV +DY
Sbjct: 138 FVSKCDSCQRKGNISRRNEMPQNPILEVDIFDVWGIDFMGPFP--SSYGNKYILVVVDYV 195
Query: 1989 TKWVEA-ASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 2047
+KWVEA AS TN K VV K K I R+GV +I+D G + N V + L ++ ++H
Sbjct: 196 SKWVEAIASPTNDAK-VVLKLFKTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKH 254
Query: 2048 HNSSPYRPQMNGAVEAANKNIKRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPF 2106
++PY PQ +G VE +N+ IK I++K V T KDW L AL Y+T ++ G TPF
Sbjct: 255 KVATPYHPQTSGQVEISNREIKTILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPF 314
Query: 2107 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQAR 2166
+L+ L +E+E ++ + + R QL+ ++E R++A + Y+ R
Sbjct: 315 NLLCVKSCHLHVELEYKAMWAVKLLNFDIKTAEEKRLIQLSELDEIRLEAYESSKIYKER 374
Query: 2167 MKTAFDKKVHPREFKVGELVL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTH 2224
K DKK+ ++F+VG+ VL R+ P GK + GP+ + + GA+ L
Sbjct: 375 TKLFHDKKIITKDFQVGDQVLLFNSRLKIFP---GKLKSRWSGPFCITEVRPYGAVTLAG 431
Query: 2225 MDGVELPNPVNADIVKKYFA 2244
GV VN +KKY A
Sbjct: 432 KSGV---FTVNGQRLKKYLA 448
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,293,361
Number of Sequences: 26719
Number of extensions: 2415452
Number of successful extensions: 9386
Number of sequences better than 10.0: 267
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 7677
Number of HSP's gapped (non-prelim): 894
length of query: 2244
length of database: 11,318,596
effective HSP length: 115
effective length of query: 2129
effective length of database: 8,245,911
effective search space: 17555544519
effective search space used: 17555544519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146556.9