BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.7 - phase: 0 /pseudo
(1014 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g31530 hypothetical protein 145 9e-35
At1g20390 hypothetical protein 140 3e-33
At1g37200 hypothetical protein 126 7e-29
At2g13330 F14O4.9 113 5e-25
At2g15410 putative retroelement pol polyprotein 86 1e-16
At4g32220 hypothetical protein 81 3e-15
At3g01410 putative RNase H 74 3e-13
At2g13230 pseudogene 72 1e-12
At2g12920 pseudogene 64 4e-10
At1g24090 unknown protein 60 6e-09
At5g51080 unknown protein 59 1e-08
At2g13060 pseudogene 58 2e-08
At2g11940 putative retroelement gag/pol polyprotein 55 3e-07
At2g11680 putative retroelement pol polyprotein 52 2e-06
At2g10690 putative retroelement pol polyprotein 52 2e-06
At1g37060 Athila retroelment ORF 1, putative 48 2e-05
At2g12040 T10J7.2 46 9e-05
At4g04060 putative transposon protein 46 1e-04
At2g14400 putative retroelement pol polyprotein 43 0.001
At4g21420 hypothetical protein 42 0.002
>At3g31530 hypothetical protein
Length = 831
Score = 145 bits (367), Expect = 9e-35
Identities = 113/382 (29%), Positives = 172/382 (44%), Gaps = 63/382 (16%)
Query: 635 LRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKA 694
L +A+ LR Y +H+ +M M P++ I P+ +GR+A+W + LSEYDI Y+ +
Sbjct: 329 LAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQSGRLAKWTIELSEYDIEYQNKTC 387
Query: 695 IKGSILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGA 754
K +LA+ + P ++ + D +L L DG+
Sbjct: 388 AKSQVLADFIVELPTKEARENPLD-----TTWL---------------------LHVDGS 421
Query: 755 VNVYGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGD 814
+ GSG+G L +P G + TNN+ EYEA + G+ A L+I K + D
Sbjct: 422 SSKQGSGVGIRLTSPTG-----------EATNNVAEYEALVAGLNLAWGLKIGKTRAFCD 470
Query: 815 LALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMIN 874
L+ NQ GE+ T+ + Y + + L F++ EL +PR EN ADALA L+S
Sbjct: 471 SQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRIPRGENTSADALAALAS--- 527
Query: 875 VNGHNTVLVINVQFLDRPAYVFAAE--------AVDDDKP------WYHDIQVFVQTQKY 920
+ + VI V+F+++P+ E + D D P W I ++ K
Sbjct: 528 TSDTSLKRVIPVEFIEKPSIELGKEEHVLPIQISADQDDPDDCNSEWMEPIISYISEGKL 587
Query: 921 PPGASNKDKKTLRKL---SSRFFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFG 977
P DK RKL ++RF L + LYK G L+ CV K+M EIH GS
Sbjct: 588 P-----SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVEAEAICKIMKEIHSGSHA 642
Query: 978 THSCGHAKL*RSLRGEESFLWW 999
A+L S+ F+ W
Sbjct: 643 PTIHQPAELLSSIASPYPFMRW 664
>At1g20390 hypothetical protein
Length = 1791
Score = 140 bits (354), Expect = 3e-33
Identities = 100/362 (27%), Positives = 176/362 (47%), Gaps = 50/362 (13%)
Query: 640 AAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSI 699
+A+ LR Y +HT +++ P++ P+ +GR+ +W + LSEYDI +R + A+K +
Sbjct: 1127 SARKLRPYFQSHTIAVLTDQ-PLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQV 1185
Query: 700 LANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYG 759
LA+ L P++ + V G + E L DG+ + G
Sbjct: 1186 LADFLIELPLQS--------------------AERAVSGNRGE---EWSLYVDGSSSARG 1222
Query: 760 SGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVI 819
SGIG L++P + + R++F TNN+ EYE I G+ A ++I I + D L+
Sbjct: 1223 SGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIA 1282
Query: 820 NQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHN 879
Q+ GE+E ++ + Y + + F +L +PR +N ADALA L+ + +
Sbjct: 1283 GQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALAL---TSDSD 1339
Query: 880 TVLVINVQFLDRPAYVFAAEAVD--------------DDKPWYHDIQVFVQTQKYPPGAS 925
+I V+ +D+P+ + + +AV+ D W +I+ ++ P
Sbjct: 1340 LRRIIPVESIDKPS-IDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLP---- 1394
Query: 926 NKDKKTLRKL---SSRFFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCG 982
DK T R+L ++++ L ++ L K + G +L C++ E ++M E HEG+ G HS G
Sbjct: 1395 -SDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGG 1453
Query: 983 HA 984
A
Sbjct: 1454 RA 1455
>At1g37200 hypothetical protein
Length = 1564
Score = 126 bits (316), Expect = 7e-29
Identities = 110/393 (27%), Positives = 162/393 (40%), Gaps = 72/393 (18%)
Query: 635 LRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKA 694
L +A+ LR Y+ +H +M+ PI+ I + R+A+W + LSEYDI YRT+ +
Sbjct: 956 LAVVMSARKLRQYLQSHPIVVMTSQ-PIRTILHSTTQSSRLAKWAIELSEYDIEYRTRTS 1014
Query: 695 IKGSILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGA 754
K +LA+ + P+ D +G + + L DG+
Sbjct: 1015 FKAQVLADFVIELPLADL--------------------------DGTNSNKKWLLHVDGS 1048
Query: 755 VNVYGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGD 814
N GSG G L +P G I + R+ F+ +NN EYEA I GI+ A +RI+ I + D
Sbjct: 1049 SNRQGSGEGIQLTSPTGEVIEQSFRLGFNASNNESEYEALIDGIKLAQGMRIRDIHAHSD 1108
Query: 815 LALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMIN 874
LV +Q GE+E + + Y + + L F EL +PR EN DALA L+S ++
Sbjct: 1109 SQLVTSQFHGEYEAKDERMEAYLELVKTLTQQFESFELTRIPRGENTSTDALAALASTLD 1168
Query: 875 V----------------------NGHNTVLVINVQFLDR----PAYVFAAEAVDDDKPWY 908
G T N + R A AA A
Sbjct: 1169 PFVKRIIPVEGIEHPSIDLTVKHAGMETSATCNFTRVTRSTTAAARALAAAAEAGAAEEE 1228
Query: 909 HDIQVFVQTQKYPP----------------GASNKDKKTLRKL---SSRFFLNEDVLYKR 949
++ Q Y P G + DK RKL S+R+ + E L KR
Sbjct: 1229 AKLRTPEQLASYEPEPYNDWRIPIIDYIERGITPPDKWETRKLKAQSARYCIMEGRLMKR 1288
Query: 950 NFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCG 982
+ G + C + LM +HEG G+H G
Sbjct: 1289 SVAGPYMVCTYGQQTKDLMKSMHEGQCGSHYSG 1321
>At2g13330 F14O4.9
Length = 889
Score = 113 bits (283), Expect = 5e-25
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 27/237 (11%)
Query: 635 LRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKA 694
L + + LR Y +H +M+ PI+ I +GR+A+W + L EYDI YRT+ +
Sbjct: 558 LTVVMSVRKLRLYFQSHPIVVMTSQ-PIRTILHSLTQSGRLAKWAIELREYDIEYRTRTS 616
Query: 695 IKGSILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGA 754
+K +LA+ + P+ D +G + + L DG+
Sbjct: 617 LKAQVLADFVIKLPLADL--------------------------DGTNSNKKWLLHVDGS 650
Query: 755 VNVYGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGD 814
N GSG+G L +P G I + ++ F+ +NN EYEA I GI+ A + I++I Y D
Sbjct: 651 SNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYSD 710
Query: 815 LALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSS 871
LV +Q GE+E + + Y + + L F +L +PR EN AD LA L+S
Sbjct: 711 SQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 85.5 bits (210), Expect = 1e-16
Identities = 78/268 (29%), Positives = 111/268 (41%), Gaps = 69/268 (25%)
Query: 781 QFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQIKGEWETRHPGLIPYRDYA 840
+F +NN EYEA I G+ A + +KKI Y D LV +Q G +E ++ + Y
Sbjct: 1189 RFPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVV 1248
Query: 841 RRLLTFFNKVELHHVPRDENQMADALATLSS------------------MINVNGHNT-- 880
R L F EL +PR +N ADALA L+S I + G T
Sbjct: 1249 RELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKP 1308
Query: 881 ---------------VLVINVQFLDR---------------PAYVFAAEAVDD------- 903
V+VI DR P + DD
Sbjct: 1309 SEYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADS 1368
Query: 904 DKP----WYHDIQVFVQTQKYPPGASNKDK---KTLRKLSSRFFLNEDVLYKRNFDGVLL 956
D P W +I+ ++ + P KDK + LR S+++ L + L + + GVLL
Sbjct: 1369 DSPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLL 1423
Query: 957 RCVNKHEAGKLMHEIHEGSFGTHSCGHA 984
C++ EA ++M EIHEG+ G HS G A
Sbjct: 1424 SCLDDEEAQQVMREIHEGAGGNHSGGRA 1451
Score = 45.1 bits (105), Expect = 2e-04
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 640 AAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIK 696
+A+ LR Y ++T +++ P++ I P+ +GR+A+W + LSEYDI Y+ + K
Sbjct: 1112 SARKLRPYFKSYTVEVLTNQ-PLRTILHSPSQSGRLAKWAVELSEYDIAYKNRTCAK 1167
>At4g32220 hypothetical protein
Length = 452
Score = 81.3 bits (199), Expect = 3e-15
Identities = 53/191 (27%), Positives = 95/191 (48%), Gaps = 31/191 (16%)
Query: 641 AKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSIL 700
A+ LR Y +H+ ++ P++ + P + RIA+W + LSEYD+ YR++ ++K +L
Sbjct: 132 ARKLRPYFQSHS--IVFTDQPLRTVLHSPNQSRRIAKWAIELSEYDVEYRSRPSLKSQVL 189
Query: 701 ANHLAHQPIEDYQPIKFD-FPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYG 759
A+ + + P D PD+ + L DG+ ++ G
Sbjct: 190 ADFMT-----ELSPDVIDVIPDENWI-----------------------LYSDGSSSLQG 221
Query: 760 SGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVI 819
S +G +L +P + + R+QF +NN EYEA + G+ A L K+I + D LV+
Sbjct: 222 SSLGILLQSPTREILEQSLRLQFKASNNEAEYEALLAGLRLAKGLGAKQIKAFSDSQLVV 281
Query: 820 NQIKGEWETRH 830
++ GE+E ++
Sbjct: 282 SRFSGEFEAKN 292
>At3g01410 putative RNase H
Length = 290
Score = 74.3 bits (181), Expect = 3e-13
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 751 FDGAV--NVYGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKK 808
FDGA N +G GAVL + + + + TNN+ EY A ++G+ A+D K
Sbjct: 155 FDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKN 214
Query: 809 IVIYGDLALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALAT 868
+ + GD LV Q++G W+T HP + A+ L+ F ++ H+ R++N AD A
Sbjct: 215 VHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQAN 274
Query: 869 LSSMINVNGHNTVL 882
S++ +G V+
Sbjct: 275 -SAIFLADGQTQVI 287
>At2g13230 pseudogene
Length = 353
Score = 72.4 bits (176), Expect = 1e-12
Identities = 56/171 (32%), Positives = 84/171 (48%), Gaps = 35/171 (20%)
Query: 837 RDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNTVLVINVQFLDRPAY-- 894
+D+A++ F++ +L +PR EN ADALA L+S ++N VI V+F+++P+
Sbjct: 9 QDHAKQ----FHEFKLTRIPRGENTSADALAALASTSDLNMRR---VIPVEFIEKPSIEL 61
Query: 895 -----------VFAAEAVDDDKP-------WYHDIQVFVQTQKYPPGASNKDKKTLRKL- 935
V E D+ P W I+ F+ +K DK RKL
Sbjct: 62 DKVEHAFPIQVVAGYEDASDNSPSLGCDSEWIEPIRNFISKRKV-----RLDKWEARKLK 116
Query: 936 --SSRFFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHA 984
++RF L E+ L+K G L+ CV K A K+M E+H GS G +S G A
Sbjct: 117 AEAARFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRA 167
>At2g12920 pseudogene
Length = 863
Score = 63.9 bits (154), Expect = 4e-10
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 790 EYEACIMGIEEAIDLRIKKIVIYGDLALVINQIKGEWETRHPGLIPYRDYARRLLTFFNK 849
EYEA + G++ A L+I KI + D +LV NQ GE+ R + Y +++ L F++
Sbjct: 560 EYEALVAGLKLAQGLKIAKIRAFCDSSLVANQFNGEYTARDERMGAYLTHSQDLAKQFDE 619
Query: 850 VELHHVPRDENQMADALATLSSMINVNGHNTVLVINVQFLDRPA 893
EL +PR +N+ ADALA L+S + VI V+F+++P+
Sbjct: 620 FELSRIPRGKNKSADALAALAS---TSDPYLRRVIPVKFIEKPS 660
>At1g24090 unknown protein
Length = 535
Score = 60.1 bits (144), Expect = 6e-09
Identities = 47/125 (37%), Positives = 60/125 (47%), Gaps = 5/125 (4%)
Query: 751 FDGAV--NVYGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKK 808
FDGA N SG AVL T G+ I + TNN EY A I+G++ AI+ K
Sbjct: 221 FDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKN 280
Query: 809 IVIYGDLALVI---NQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADA 865
I + GD LV QIKG+W+ H L A+ L E+ HV R+ N AD
Sbjct: 281 IKVKGDSKLVCMQKQQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADE 340
Query: 866 LATLS 870
A L+
Sbjct: 341 QANLA 345
>At5g51080 unknown protein
Length = 322
Score = 58.9 bits (141), Expect = 1e-08
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 751 FDGAV--NVYGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKK 808
FDGA N SG AVL T G+ I + TNN EY I+G++ AI+ K
Sbjct: 190 FDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTK 249
Query: 809 IVIYGDLALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALAT 868
I + D LV Q+KG+W+ H L A++L E+ HV R N AD A
Sbjct: 250 IKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQAN 309
Query: 869 LSSMIN 874
+++ ++
Sbjct: 310 MAARLS 315
>At2g13060 pseudogene
Length = 930
Score = 58.2 bits (139), Expect = 2e-08
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 897 AAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSSRFFLNEDVLYKRNFDGVLL 956
A AV+ D PWY DI ++ P ++ +KK + R+ +E LYK ++DG+
Sbjct: 128 AVTAVEKDYPWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYR 187
Query: 957 RCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEESFLWW 999
RC+ E ++ H S+G H + + L+ + WW
Sbjct: 188 RCIAATEVPSILSHCHSSSYGGHFATFKTVSKVLQAD---FWW 227
Score = 35.8 bits (81), Expect = 0.13
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 674 RIARWQMLLSEYDIVYRTQKAIKGSILANHLAHQPIEDYQPIKFDFPDKEIMYL 727
R+ W +LL E+DI R +K ++ + A+HL+ I+D PI DF +E +Y+
Sbjct: 9 RLLIWILLLQEFDIEVRDKKGVENGV-ADHLSRIRIDDDVPIN-DFLPEENIYM 60
>At2g11940 putative retroelement gag/pol polyprotein
Length = 1212
Score = 54.7 bits (130), Expect = 3e-07
Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 47/214 (21%)
Query: 815 LALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMIN 874
LA + G++E + + Y D R L F K EL VPR EN ADALA L+S
Sbjct: 739 LATTASDYSGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADALAALASTPE 798
Query: 875 VNGHNTVLVINVQFLDRP-------AYVFAA------------------------EAV-- 901
+ +I+V+ + +P +V A EAV
Sbjct: 799 ITVRR---IISVETIAQPNIRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEIPEAVPL 855
Query: 902 --DDDKPWYHDIQVFVQTQKYP------PGASNKDKKTLRKLS---SRFFLNEDVLYKRN 950
D+D Y+ + + P G DK RKL +RF L +D+LY+R
Sbjct: 856 VADEDSTEYNLPHDWGADWREPIRNYIFNGVLPTDKWEARKLKATCARFCLADDILYRRI 915
Query: 951 FDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHA 984
C+ + ++ EIH+G+ G HS G +
Sbjct: 916 ISAPDAICIFGEQTRTVIKEIHDGTCGNHSGGRS 949
Score = 47.8 bits (112), Expect = 3e-05
Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 640 AAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSI 699
AA+ LR Y +H +++ + P++ I P +GR+A+W + LSE+++ + + ++K +
Sbjct: 671 AARKLRPYFQSHPIVVLTSL-PLRTILHSPNQSGRLAKWAIELSEFNLEFHARTSLKSQV 729
Query: 700 LANHLAHQPI 709
LA+ L P+
Sbjct: 730 LADFLIELPL 739
>At2g11680 putative retroelement pol polyprotein
Length = 301
Score = 51.6 bits (122), Expect = 2e-06
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 630 T*ENLLRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVY 689
T + LL +A + R Y+V + + +++I+ K R+ RW +LL E+D+
Sbjct: 148 TEKELLAVVFAFEKFRSYLVGSKVTVYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEI 207
Query: 690 RTQKAIKGSILANHLAHQPIEDYQPIKFDFPDKEIMYLK 728
+K I+ + A+HL+ IED PI P++++M ++
Sbjct: 208 VDKKGIENGV-ADHLSRMRIEDEVPIDDSMPEEQLMAIQ 245
>At2g10690 putative retroelement pol polyprotein
Length = 622
Score = 51.6 bits (122), Expect = 2e-06
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 632 ENLLRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRT 691
+ LL +A + +R Y+V + +++I+ K R+ RW +LL E+D+
Sbjct: 395 KELLAVVFAFEKIRSYLVGFKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIID 454
Query: 692 QKAIKGSILANHLAHQPIEDYQPIKFDFPDKEIMY 726
+K ++ + A+HL+ IED PI P++++M+
Sbjct: 455 KKGVENGV-ADHLSRMRIEDSVPIDDTMPEEQLMF 488
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 48.1 bits (113), Expect = 2e-05
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 630 T*ENLLRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVY 689
T + LL +A + R Y+V + + +++I+ K R+ RW +LL E+D+
Sbjct: 1229 TEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEI 1288
Query: 690 RTQKAIKGSILANHLAHQPIEDYQPIKFDFPDKEIMYLK 728
+K I+ + A+HL+ IED I P++++M ++
Sbjct: 1289 VDKKGIENGV-ADHLSRMRIEDEVLIDDSMPEEQLMAIQ 1326
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/106 (24%), Positives = 51/106 (47%), Gaps = 4/106 (3%)
Query: 895 VFAAEAVDDDK-PWYHDIQVFVQTQKYPPGASNKDKKTLRKLSSRFFLNEDVLYKRNFDG 953
+ A + +++ K PWY D ++ + + PP S+ +KK K + F+ +E LY D
Sbjct: 1322 LMAIQQLNEKKLPWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDK 1381
Query: 954 VLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEESFLWW 999
+ CV++ E ++ H ++G H + + L ++ WW
Sbjct: 1382 IYRTCVSEDEIEGILLHCHGFAYGGHFATFKTMSKIL---QAGFWW 1424
>At2g12040 T10J7.2
Length = 976
Score = 46.2 bits (108), Expect = 9e-05
Identities = 29/98 (29%), Positives = 51/98 (51%), Gaps = 2/98 (2%)
Query: 630 T*ENLLRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVY 689
T + L +A + R Y+V + + +KY+ + R+ RW +LL E+DI
Sbjct: 284 TEKEFLAVVFAFEKFRSYLVGLKVIVHTDHAALKYLMQNKDAKPRLLRWILLLQEFDIEV 343
Query: 690 RTQKAIKGSILANHLAHQPIEDYQPIKFDFPDKEIMYL 727
R +K ++ +A+HL+ I+D PI DF +E +Y+
Sbjct: 344 RDKKGVE-KCVADHLSRIRIDDDVPIN-DFLPEENIYM 379
>At4g04060 putative transposon protein
Length = 375
Score = 45.8 bits (107), Expect = 1e-04
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 806 IKKIVIYGDLALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADA 865
I+ I + D LVI+Q GE+E + + Y + + L F EL +PR EN ADA
Sbjct: 3 IRDIHAHSDSQLVISQFHGEYEAKDERMEAYLELVKTLTQQFESFELTMIPRGENTSADA 62
Query: 866 LATLS 870
LA L+
Sbjct: 63 LAALA 67
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 817 LVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSS 871
+++NQ G++E + + Y + L F K EL +PR +N ADALA L+S
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALAS 844
>At4g21420 hypothetical protein
Length = 229
Score = 42.0 bits (97), Expect = 0.002
Identities = 43/163 (26%), Positives = 75/163 (45%), Gaps = 4/163 (2%)
Query: 711 DYQ-PIKFDFPDKEI-MYLKMKDCDEPVFGEGPDPES-E*GLIFDGAVNVYG-SGIGAVL 766
DY+ PI D D+ + ++K D PV PE+ L FDG+ G + IG V
Sbjct: 32 DYKDPISEDQYDRRLNQRRRIKLRDRPVKVVWKKPENGRIKLNFDGSRGREGQASIGGVF 91
Query: 767 ITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQIKGEW 826
K + + + T+ + E+ A G+E A++ + + + GD ++++ I
Sbjct: 92 RNHKAEFLLGYSESIGEATSTMAEFAALKRGLELALENGLTDLWLEGDAKIIMDIISRRG 151
Query: 827 ETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATL 869
R + +Y + ++ N L HV R+ N++AD LA L
Sbjct: 152 RLRCEKTNKHVNYIKVVMPELNNCVLSHVYREGNRVADKLAKL 194
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.352 0.157 0.561
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,645,937
Number of Sequences: 26719
Number of extensions: 815446
Number of successful extensions: 2474
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2395
Number of HSP's gapped (non-prelim): 77
length of query: 1014
length of database: 11,318,596
effective HSP length: 109
effective length of query: 905
effective length of database: 8,406,225
effective search space: 7607633625
effective search space used: 7607633625
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC146554.7