BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.5 + phase: 0
(236 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25160 ZFP3 zinc finger protein 66 1e-11
At1g66140 zinc finger protein ZFP4 63 2e-10
At1g80730 zinc finger protein ZFP1 62 2e-10
At5g01860 putative zinc finger protein 62 3e-10
At5g10970 zinc finger -like protein 61 6e-10
At5g57520 zinc finger protein ZFP2 59 3e-09
At2g41940 zinc finger protein ZFP8 59 3e-09
At1g24625 zinc finger protein ZFP7 57 7e-09
At5g27880 putative protein 56 2e-08
At3g58070 zinc finger-like protein 54 7e-08
At1g67030 zinc finger protein ZFP6 54 9e-08
At5g14010 putative protein 53 2e-07
At5g06650 zinc finger-like protein 53 2e-07
At5g05120 putative protein 52 3e-07
At1g10480 zinc finger protein 5, ZFP5 52 3e-07
At5g48890 putative protein 49 2e-06
At1g13400 hypothetical protein 49 2e-06
At1g68360 putative zinc finger protein 48 5e-06
At3g60580 zinc finger protein - like 45 4e-05
At2g37740 putative C2H2-type zinc finger protein 45 4e-05
>At5g25160 ZFP3 zinc finger protein
Length = 235
Score = 66.2 bits (160), Expect = 1e-11
Identities = 43/100 (43%), Positives = 53/100 (53%), Gaps = 14/100 (14%)
Query: 47 EQKVVEFSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDRRREEEMDLTLRFSSFIHYQ 106
EQK+ FSCNYC + F +SQALGGHQNAHKRER L K R + S+F H
Sbjct: 57 EQKL--FSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQR-------MAASASAFGHPY 107
Query: 107 GHS---YFRSANLHNPIGVHVTNAFPSWIGSPYGGYGGVY 143
G S + N H +G+ + S S Y G+GG Y
Sbjct: 108 GFSPLPFHGQYNNHRSLGIQAHSI--SHKLSSYNGFGGHY 145
>At1g66140 zinc finger protein ZFP4
Length = 260
Score = 62.8 bits (151), Expect = 2e-10
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 17 LGTHTKSTSKPLENGGHSSS-FQNTLDEPLPEQKVVEFSCNYCDKKFSTSQALGGHQNAH 75
L + S + PL + SS+ Q +P ++V FSCNYC +KF +SQALGGHQNAH
Sbjct: 50 LDLESSSLTLPLSSTSESSNPEQQQQQQPSVSKRV--FSCNYCQRKFYSSQALGGHQNAH 107
Query: 76 KRERVLKK 83
KRER L K
Sbjct: 108 KRERTLAK 115
>At1g80730 zinc finger protein ZFP1
Length = 228
Score = 62.4 bits (150), Expect = 2e-10
Identities = 50/135 (37%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 15 LRLGTHTKSTSKPLEN---GGHSSSFQNTLDEPLPEQKVVEFSCNYCDKKFSTSQALGGH 71
L GT T S +++ S+S E L + +V FSCNYC +KF +SQALGGH
Sbjct: 29 LSRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRV--FSCNYCQRKFYSSQALGGH 86
Query: 72 QNAHKRERVLKKMEDRRREEEMDLTLRFSSFIHYQGHSYFR-----------SANLHNPI 120
QNAHKRER L K R + +M L+ SS + S R S N + +
Sbjct: 87 QNAHKRERTLAK---RGQYYKMTLSSLPSSAFAFGHGSVSRFASMASLPLHGSVNNRSTL 143
Query: 121 GV--HVTNAFPSWIG 133
G+ H T PS++G
Sbjct: 144 GIQAHSTIHKPSFLG 158
>At5g01860 putative zinc finger protein
Length = 215
Score = 61.6 bits (148), Expect = 3e-10
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 19 THTKSTSKPLENGGHSSSFQNTLDEPLP--EQKVVEFSCNYCDKKFSTSQALGGHQNAHK 76
T + T++P + F+ +E E K F+C +C K+FSTSQALGGHQNAHK
Sbjct: 31 TKEEVTAEPSKENQQRLEFRFLFNESSTRNEAKARVFACTFCKKEFSTSQALGGHQNAHK 90
Query: 77 RERVLKKMEDRRREEEMDLTLRFSSFIHY--QGHSYFRSAN------LHNPIGVHVTNAF 128
+ER L K RR+E E++ S + Y G S+ S++ +NP T +
Sbjct: 91 QERSLAK---RRKEIEINYP-ELSIYSQYPPSGLSFSSSSSQYDLGVRYNPNIAKTTKPY 146
Query: 129 PSWIGSPYGGY-GGVYMP 145
P I + GY GG+ P
Sbjct: 147 PFNIFACRFGYRGGLNFP 164
>At5g10970 zinc finger -like protein
Length = 272
Score = 60.8 bits (146), Expect = 6e-10
Identities = 47/122 (38%), Positives = 57/122 (46%), Gaps = 25/122 (20%)
Query: 28 LENGGHSSSFQNTLDEPLPEQKVVEFSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDR 87
LE G + SF + EQK+ FSCNYC + F +SQALGGHQNAHKRER L K
Sbjct: 84 LETGVVTPSFNGSTST---EQKL--FSCNYCQRTFYSSQALGGHQNAHKRERTLAK---- 134
Query: 88 RREEEMDLTLRFSSFIHYQGHSY------FRSANLHNPIGVHVTNAFPSWIGSPYGGYGG 141
R + M F GH Y F + +G+ + S S Y YGG
Sbjct: 135 -RGQRMASAAAF-------GHPYGFAPVPFHGQYSNRTLGIQAHSM--SHKPSSYNVYGG 184
Query: 142 VY 143
Y
Sbjct: 185 EY 186
>At5g57520 zinc finger protein ZFP2
Length = 150
Score = 58.5 bits (140), Expect = 3e-09
Identities = 31/50 (62%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 34 SSSFQNTLDEPLPEQKVVEFSCNYCDKKFSTSQALGGHQNAHKRERVLKK 83
SSS +T EQ V FSCNYC +KF +SQALGGHQNAHK ER L K
Sbjct: 34 SSSSSSTNSSSCLEQPRV-FSCNYCQRKFYSSQALGGHQNAHKLERTLAK 82
>At2g41940 zinc finger protein ZFP8
Length = 257
Score = 58.5 bits (140), Expect = 3e-09
Identities = 37/121 (30%), Positives = 51/121 (41%), Gaps = 14/121 (11%)
Query: 53 FSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDRRREEEMDLTLRFSSFIHYQGHSYFR 112
F C+YC + F TSQALGGHQNAHKRER K +S++H+ H
Sbjct: 95 FECHYCFRNFPTSQALGGHQNAHKRERQHAKRGS------------MTSYLHH--HQPHD 140
Query: 113 SANLHNPIGVHVTNAFPSWIGSPYGGYGGVYMPNTPLATRYVMQMPNSPQATPQFGMTNF 172
+++ + H +PSW YGG +R + P+S T
Sbjct: 141 PHHIYGFLNNHHHRHYPSWTTEARSYYGGGGHQTPSYYSRNTLAPPSSNPPTINGSPLGL 200
Query: 173 W 173
W
Sbjct: 201 W 201
>At1g24625 zinc finger protein ZFP7
Length = 209
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/31 (77%), Positives = 27/31 (86%)
Query: 53 FSCNYCDKKFSTSQALGGHQNAHKRERVLKK 83
FSCNYC +KF +SQALGGHQNAHKRER + K
Sbjct: 59 FSCNYCRRKFYSSQALGGHQNAHKRERTMAK 89
>At5g27880 putative protein
Length = 278
Score = 55.8 bits (133), Expect = 2e-08
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 15 LRLGTHTKSTS-KPLENGGHSSSFQNTLDEPL---PEQKVVEFSCNYCDKKFSTSQALGG 70
L+LG+ + TS + +EN SS E + P + ++C++C K FSTSQALGG
Sbjct: 38 LKLGSPQEVTSERRIENSSFGSSAVRRGREIMKFYPSKSNKIYTCHFCKKGFSTSQALGG 97
Query: 71 HQNAHKRERVLKKMEDRRREEEMD 94
HQNAHK+ER + + +R+E E +
Sbjct: 98 HQNAHKQER---EWDKKRKEMEAE 118
>At3g58070 zinc finger-like protein
Length = 253
Score = 53.9 bits (128), Expect = 7e-08
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 19 THTKSTSKPLENGGHSSSFQNTLDEPLPEQKVVEFSCNYCDKKFSTSQALGGHQNAHKRE 78
T K + + G +S+ N++ F C+YC + F TSQALGGHQNAHKRE
Sbjct: 63 TKNKEEEEEEDQTGDNSTDNNSISHNR------RFECHYCFRNFPTSQALGGHQNAHKRE 116
Query: 79 RVLKK 83
R L K
Sbjct: 117 RQLAK 121
>At1g67030 zinc finger protein ZFP6
Length = 197
Score = 53.5 bits (127), Expect = 9e-08
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 34 SSSFQNTLDEPLPEQ----KVVEFSCNYCDKKFSTSQALGGHQNAHKRERVLKK 83
++S QN EP P + ++ C YC ++F+ SQALGGHQNAHK+ER L K
Sbjct: 18 TTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKERQLLK 71
>At5g14010 putative protein
Length = 161
Score = 52.8 bits (125), Expect = 2e-07
Identities = 22/27 (81%), Positives = 23/27 (84%)
Query: 53 FSCNYCDKKFSTSQALGGHQNAHKRER 79
F C YC +KF TSQALGGHQNAHKRER
Sbjct: 38 FPCQYCPRKFYTSQALGGHQNAHKRER 64
>At5g06650 zinc finger-like protein
Length = 191
Score = 52.8 bits (125), Expect = 2e-07
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 47 EQKVVEFSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDRRREEEMDLTLRFSSFIHYQ 106
+ K F C+YC + F TSQALGGHQNAHKRE R++ + +L ++F H Q
Sbjct: 49 DNKEKRFKCHYCFRNFPTSQALGGHQNAHKRE--------RQQTKRFNLHSNAAAFFHRQ 100
>At5g05120 putative protein
Length = 201
Score = 52.0 bits (123), Expect = 3e-07
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 53 FSCNYCDKKFSTSQALGGHQNAHKRERVLKKMED----RRREEEMDLTLRFSSFIHYQGH 108
+ C YC +KF +QALGGHQNAH++ER ++K + E DL S+ H +
Sbjct: 27 YKCKYCPRKFDKTQALGGHQNAHRKEREVEKQQKAFLAHLNRPEPDLYAYSYSYHHSFPN 86
Query: 109 SYFRSANLHNP-----IGVHVTNAFPSWIGSPYGGYGGVYM-PNTPLATRYVMQ-MPNSP 161
Y P ++ + ++GS + G+ P+ + + +P P
Sbjct: 87 QYALPPGFEQPQYKVDRSYKMSMVYNQYVGSSSSSFAGLQSDPSQGMNQDWTFTGIPFLP 146
Query: 162 QATPQ-----FGMTNFWGGGLNASLPIPQRSN 188
Q+ PQ + G G + + P PQ N
Sbjct: 147 QSQPQPLSSPICLDLCLGIGSSQTQPQPQEPN 178
>At1g10480 zinc finger protein 5, ZFP5
Length = 211
Score = 52.0 bits (123), Expect = 3e-07
Identities = 21/29 (72%), Positives = 25/29 (85%)
Query: 55 CNYCDKKFSTSQALGGHQNAHKRERVLKK 83
C YC K+F+ SQALGGHQNAHK+ER+ KK
Sbjct: 62 CQYCGKEFANSQALGGHQNAHKKERLKKK 90
>At5g48890 putative protein
Length = 173
Score = 49.3 bits (116), Expect = 2e-06
Identities = 23/49 (46%), Positives = 30/49 (60%), Gaps = 2/49 (4%)
Query: 39 NTLDEPLPEQKVVEFSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDR 87
N DE ++ F C +C +KF +SQALGGHQNAHK+ER + R
Sbjct: 23 NKTDENTSSLRI--FPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKR 69
>At1g13400 hypothetical protein
Length = 240
Score = 49.3 bits (116), Expect = 2e-06
Identities = 25/60 (41%), Positives = 33/60 (54%), Gaps = 5/60 (8%)
Query: 52 EFSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDRRREEEMDLTLRFSSFIHYQGHSYF 111
E+ C +C KF SQALGGH N H++ER + + R +L LR SF +QG F
Sbjct: 82 EYECRFCSLKFFKSQALGGHMNRHRQERETESLNKAR-----ELVLRNDSFPPHQGPPSF 136
>At1g68360 putative zinc finger protein
Length = 244
Score = 47.8 bits (112), Expect = 5e-06
Identities = 18/28 (64%), Positives = 23/28 (81%)
Query: 52 EFSCNYCDKKFSTSQALGGHQNAHKRER 79
++ C YC ++F SQALGGHQNAHK+ER
Sbjct: 72 KYECQYCCREFGNSQALGGHQNAHKKER 99
>At3g60580 zinc finger protein - like
Length = 288
Score = 44.7 bits (104), Expect = 4e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 53 FSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDRRREEEMDLTLRFSSFIH 104
+ C C K F + QALGGH+ +HK+ RV ++R E E D + + IH
Sbjct: 173 YKCETCGKVFKSYQALGGHRASHKKNRVSNNKTEQRSETEYDNVVVVAKRIH 224
Score = 29.3 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 53 FSCNYCDKKFSTSQALGGHQNAH 75
+ C C K F +ALGGH +H
Sbjct: 4 YKCRVCFKSFVNGKALGGHMRSH 26
Score = 28.5 bits (62), Expect = 3.2
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 55 CNYCDKKFSTSQALGGHQNAH 75
C C + F++ QALGGH+ +H
Sbjct: 226 CPICLRVFASGQALGGHKRSH 246
>At2g37740 putative C2H2-type zinc finger protein
Length = 304
Score = 44.7 bits (104), Expect = 4e-05
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 53 FSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDRRREEEMDLTLRFSSFIHYQGHSYFR 112
++C++C ++F ++QALGGH N H+R+R K D + L + SS Y H
Sbjct: 39 YTCSFCRREFKSAQALGGHMNVHRRDRARLKQAD-----DQYLFPKSSSSPEYPSHK--D 91
Query: 113 SANLH 117
S N+H
Sbjct: 92 SDNIH 96
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.315 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,781,657
Number of Sequences: 26719
Number of extensions: 260351
Number of successful extensions: 889
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 141
length of query: 236
length of database: 11,318,596
effective HSP length: 96
effective length of query: 140
effective length of database: 8,753,572
effective search space: 1225500080
effective search space used: 1225500080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146554.5