BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.3 - phase: 0
(247 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07090 ribosomal protein S4 454 e-128
At5g58420 ribosomal protein S4 - like 453 e-128
At2g17360 putative ribosomal protein S4 453 e-128
At2g26730 putative receptor-like protein kinase 31 0.54
At3g53240 disease resistance - like protein 29 2.7
At1g13080 putative cytochrome P450 monooxygenase (At1g13080) 28 3.5
At1g08470 unknown protein 28 3.5
At3g20820 unknown protein 28 4.5
>At5g07090 ribosomal protein S4
Length = 262
Score = 454 bits (1169), Expect = e-128
Identities = 218/245 (88%), Positives = 237/245 (95%), Gaps = 1/245 (0%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAKFKLCKVRS+QFGQKGIPY
Sbjct: 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
LNTYDGRTIRYPDPLIK NDTIKLDLE+NKI +FIKFDVGNVVMVTGGRNRGRVG IKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FETIH+QD+ GHEFATRLGNV+TIG+G KPWVSLPKG+GIKLT+IEEARKR+ A
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRL-A 257
Query: 241 SQQAA 245
SQQAA
Sbjct: 258 SQQAA 262
>At5g58420 ribosomal protein S4 - like
Length = 262
Score = 453 bits (1166), Expect = e-128
Identities = 218/245 (88%), Positives = 236/245 (95%), Gaps = 1/245 (0%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAKFKLCKVRS+QFGQKGIPY
Sbjct: 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
LNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNVVMVTGGRNRGRVG IKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FETIH+QD+ GHEFATRLGNV+TIG+G KPWVSLPKG+GIKLT+IEEARKR+ A
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRL-A 257
Query: 241 SQQAA 245
SQQAA
Sbjct: 258 SQQAA 262
>At2g17360 putative ribosomal protein S4
Length = 261
Score = 453 bits (1165), Expect = e-128
Identities = 214/242 (88%), Positives = 234/242 (96%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAKFKLCKVRS+QFGQKGIPY
Sbjct: 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
LNTYDGRTIRYPDPLIK NDTIKLDLE+NKI +FIKFDVGNVVMVTGGRNRGRVG IKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FETIH+QD+ GHEFATRLGNV+TIG+G KPWVSLPKG+GIKLT+IEEARKR++A
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLSA 258
Query: 241 SQ 242
Q
Sbjct: 259 QQ 260
>At2g26730 putative receptor-like protein kinase
Length = 658
Score = 31.2 bits (69), Expect = 0.54
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 131 YPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTG 167
+P + N+ I+LD+ N T I F V N+ +TG
Sbjct: 131 FPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167
>At3g53240 disease resistance - like protein
Length = 891
Score = 28.9 bits (63), Expect = 2.7
Identities = 20/81 (24%), Positives = 30/81 (36%)
Query: 144 LDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNRKKHMGTFETIHVQDAAGHEFATR 203
LDL N + + DVG ++ N F+ N M E I D + + F+ +
Sbjct: 353 LDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGK 412
Query: 204 LGNVFTIGRGPKPWVSLPKGR 224
L G W+ L R
Sbjct: 413 LPRNLFTGCYSLSWLKLSHNR 433
>At1g13080 putative cytochrome P450 monooxygenase (At1g13080)
Length = 502
Score = 28.5 bits (62), Expect = 3.5
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 129 IRYPDPLIKANDTIK--LDLEQNKIT--DFIKFDVGNVVMVTGGRNRGRVGFIKNRKKHM 184
IR P + KA ++I+ L L++ +IT D K + N ++ R + F+ R+
Sbjct: 321 IRNPRVMKKAQESIRTTLGLKKERITEEDLGKVEYLNHILKETFRLHPALPFVVPRE--- 377
Query: 185 GTFETIHVQDAAGHEFATRLG---NVFTIGRGPKPW 217
T I +Q G++ + NV+TIGR PK W
Sbjct: 378 -TMSHIKIQ---GYDIPPKTQIQLNVWTIGRDPKRW 409
>At1g08470 unknown protein
Length = 390
Score = 28.5 bits (62), Expect = 3.5
Identities = 27/101 (26%), Positives = 46/101 (44%), Gaps = 16/101 (15%)
Query: 62 KTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGI-PY 120
KTY + S+PK + LL +++ RF L+ V+ E S+ F +G PY
Sbjct: 34 KTYKIDMPPLSSLPKERDRQNLLQNSEIRF-LNEVQGPE---------SIAFDPQGRGPY 83
Query: 121 LNTYDGRTI-----RYPDPLIKANDTIKLDLEQNKITDFIK 156
DGR + R+ D +N+ +L + + D++K
Sbjct: 84 TGVADGRILFWNGTRWTDFAYTSNNRSELCDPKPSLLDYLK 124
>At3g20820 unknown protein
Length = 365
Score = 28.1 bits (61), Expect = 4.5
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 117 GIPY----------LNTYDGRTI-RYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVM- 164
GIPY LN D R P L + + LDL N I+ I DVG + M
Sbjct: 142 GIPYDIGRLNRLAVLNVADNRISGSIPKSLTNLSSLMHLDLRNNLISGVIPSDVGRLKML 201
Query: 165 ----VTGGRNRGRV 174
++G R GR+
Sbjct: 202 SRALLSGNRITGRI 215
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,550,425
Number of Sequences: 26719
Number of extensions: 231220
Number of successful extensions: 535
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 8
length of query: 247
length of database: 11,318,596
effective HSP length: 97
effective length of query: 150
effective length of database: 8,726,853
effective search space: 1309027950
effective search space used: 1309027950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146554.3