BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146549.14 + phase: 0 /pseudo/partial
         (221 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g14400 unknown protein                                              28  3.8
At1g14681 hypothetical protein                                         28  5.0
At4g11590 putative protein                                             27  6.5
At1g24040 unknown protein                                              27  6.5
At1g33610 hypothetical protein                                         27  8.5
At1g01980 hypothetical protein                                         27  8.5

>At3g14400 unknown protein
          Length = 661

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)

Query: 136 RFIISTLCHRANLRFLSMPSLNRYNINCRFNNNNKISKL--GLLSLRYRCYMLSC 188
           R++I   CH  +LR   +    RYN N  FN N+ + ++  G L  + +C  LSC
Sbjct: 122 RYVIDA-CHNTSLRLKKL----RYNGNEPFNGNSVVKEIFGGALQSQVKC--LSC 169


>At1g14681 hypothetical protein
          Length = 290

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 11/112 (9%)

Query: 68  ESLCLRKLNLLRAHRRGMVMDTTRRKKLKWGWYQLEPVNQWLLLLLSMQLKCLRHTHICR 127
           ES+ L ++ L          +T  RK     W QL+P  Q  + L+SM +K +     C 
Sbjct: 168 ESISLGRIFLEANSEEDKCCETLLRK-----WDQLKPTTQKFVSLVSM-VKRIEKEKECL 221

Query: 128 ILSIRSSHRFI-----ISTLCHRANLRFLSMPSLNRYNINCRFNNNNKISKL 174
           I+++  + + +      +    R N +FL   S  R + + +FN    I  +
Sbjct: 222 IMNLAKAEQEVELVSEQNRELDRENRKFLRQCSAERSHGSNKFNKRKSIKMM 273


>At4g11590 putative protein
          Length = 397

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 103 EPVN-QWLLLLLSMQLKCLRHTHICRILSIRSSHR 136
           +PVN ++ LL+L M+ K  RH    RIL + S H+
Sbjct: 168 DPVNDEYKLLVLCMKEKMQRHDGRTRILQLSSQHQ 202


>At1g24040 unknown protein
          Length = 308

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 2/49 (4%)

Query: 109 LLLLLSMQLKCLRHTHICRILSIRSSHRFIISTLC--HRANLRFLSMPS 155
           L + L+  +  L+ T   +     SSHR+ +   C  HR+NLRF   PS
Sbjct: 4   LSISLAFSVDSLKPTQSTKFGFSSSSHRYPLLYSCKSHRSNLRFAFPPS 52


>At1g33610 hypothetical protein
          Length = 907

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 76  NLLRAHRRGMVMDTTRRKKLKWGWYQLEPVNQWLLLLLSMQL 117
           NLL      + ++T     L +  +QLE + QW+ LL S+ L
Sbjct: 306 NLLTGQFPDLTVNTIEYLDLSYNQFQLETIPQWVTLLPSVFL 347


>At1g01980 hypothetical protein
          Length = 541

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 154 PSLNRYNINCRFNNNNKISKLGLLSLRYRCYMLSC--------FQLYSREGIVQLDRVS 204
           P+L  Y  N RFN +     L +++ R  C++ +         FQL +R G    D VS
Sbjct: 61  PTLRAYIRNARFNTSTSPKPLLVIAARSECHVQATVLCTKSLNFQLKTRSGGHDYDGVS 119


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.340    0.147    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,627,094
Number of Sequences: 26719
Number of extensions: 171186
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 6
length of query: 221
length of database: 11,318,596
effective HSP length: 95
effective length of query: 126
effective length of database: 8,780,291
effective search space: 1106316666
effective search space used: 1106316666
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 58 (26.9 bits)