BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146549.11 + phase: 0
(597 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17910 putative non-LTR retroelement reverse transcriptase 243 3e-64
At2g17610 putative non-LTR retroelement reverse transcriptase 230 1e-60
At2g41580 putative non-LTR retroelement reverse transcriptase 226 4e-59
At1g47910 reverse transcriptase, putative 226 4e-59
At1g24640 hypothetical protein 221 9e-58
At2g45230 putative non-LTR retroelement reverse transcriptase 217 2e-56
At2g31520 putative non-LTR retroelement reverse transcriptase 217 2e-56
At2g25550 putative non-LTR retroelement reverse transcriptase 216 2e-56
At2g16680 putative non-LTR retroelement reverse transcriptase 214 1e-55
At3g32110 non-LTR reverse transcriptase, putative 213 2e-55
At3g45550 putative protein 213 3e-55
At2g05200 putative non-LTR retroelement reverse transcriptase 212 5e-55
At4g09710 RNA-directed DNA polymerase -like protein 209 3e-54
At4g10830 putative protein 208 6e-54
At1g51750 hypothetical protein 203 2e-52
At1g31030 F17F8.5 201 1e-51
At1g47850 hypothetical protein 198 6e-51
At2g11240 pseudogene 198 8e-51
At2g01840 putative non-LTR retroelement reverse transcriptase 195 7e-50
At3g44650 putative protein 193 3e-49
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 243 bits (619), Expect = 3e-64
Identities = 172/549 (31%), Positives = 265/549 (47%), Gaps = 57/549 (10%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
M +GF W W+ CV++ + SVL+NG P RG+RQGDPLSP LF+L E L
Sbjct: 571 MTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALI 630
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSG 120
++ A + TG +V +HL FADDTLL+ + L L + +SG
Sbjct: 631 HILNKAEQAGKITGIQFQDKKVSV-NHLLFADDTLLMCKATKQECEELMQCLSQYGQLSG 689
Query: 121 LKVNYNKSLLV-GINI---AESWLQEAASI-LSCKLGKTPFMYLGLP--IGGDARRLCFW 173
+N NKS + G N+ + W++ + I L GK YLGLP + G R L +
Sbjct: 690 QMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGK----YLGLPECLSGSKRDLFGF 745
Query: 174 DPVLERLRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKF 233
+ E+L+SRL+ W ++ LS GG+ +LLKS+ +LPVY +S F+ P + + ++++ F
Sbjct: 746 --IKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDF 803
Query: 234 FWGGSEDHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVL 293
+W + RKI W+ W + + K+ GG G + L FN ALL K WR L ++ L+ RV
Sbjct: 804 WWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVF 863
Query: 294 SSRYGEQGGRLK-EGGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSD 352
SRY L G S WR I+ G + + +GNG TF W+D
Sbjct: 864 QSRYFSNSDFLSATRGSRPSYAWRSIL--------FGRELLMQGLRTVIGNGQKTFVWTD 915
Query: 353 CWL--GTESFMVRFRRLYDLSIHKDLSVGEM---NILGWGENGEAWRWRRRLLAWEE-EL 406
WL G+ + RR I+ DL V ++ W N R L W++ E+
Sbjct: 916 KWLHDGSNRRPLNRRRF----INVDLKVSQLIDPTSRNWNLN-----MLRDLFPWKDVEI 966
Query: 407 VVEIRILLTNVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERH----------NYDV 456
+++ R L + D + W + Y+V+ Y+ L +Q H + +
Sbjct: 967 ILKQRPLF-------FKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNS 1019
Query: 457 VSDAPWHKSAPLKVSIWAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLII 516
+ D W+ K+ I+ W+ L P +D L RG+ S D C+ +NETI+ ++
Sbjct: 1020 LFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDG--CLMCDTENETINHILF 1077
Query: 517 HCPIFGALW 525
CP+ +W
Sbjct: 1078 ECPLARQVW 1086
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 230 bits (587), Expect = 1e-60
Identities = 167/606 (27%), Positives = 283/606 (46%), Gaps = 57/606 (9%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
M +MGF W W+ C++T T S+L+NG P +RG+RQGDP+SP+L+LL EGL+
Sbjct: 48 MKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLS 107
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSG 120
L+ +++ + G+ + P + SHL FA D+L+ + L ++L ++E SG
Sbjct: 108 ALIQASIKAKQLHGFKASRNGPAI-SHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASG 166
Query: 121 LKVNYNKS-LLVGINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLER 179
VN+ KS +L G + ++ + +L + YLGLP + + + +
Sbjct: 167 QAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQT 226
Query: 180 LRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSE 239
+ ++ W ++ LS G+ +L+KS+++++P Y++S F P +I I S + F+W ++
Sbjct: 227 MDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTK 286
Query: 240 DHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGE 299
KI WV W+ + K+ GGL +R L +FN+ALL K WR L L RV ++Y
Sbjct: 287 VKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFP 346
Query: 300 QGGRLKEGGMTGSAW-WREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTE 358
+ L + S++ W+ I+ G + GNG N W D WL
Sbjct: 347 KERLLDAKATSQSSYAWKSIL--------HGTKLISRGLKYIAGNGNNIQLWKDNWLPLN 398
Query: 359 SFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLA--WEEELVVEIRILLTN 416
SI+ L V ++ I G RW LL + + IR + +
Sbjct: 399 PPRPPVGTCD--SIYSQLKVSDLLIEG--------RWNEDLLCKLIHQNDIPHIRAIRPS 448
Query: 417 VTLQDTESDVWLWRPNIGDGYTVRGVYQML--MRQERH---------NYDVVSDAPWHKS 465
+T +D W Y+V+ Y +L + Q++H + V W ++
Sbjct: 449 IT---GANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQN 505
Query: 466 APLKVSIWAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQ-NETIDLLIIHCPIFGAL 524
AP K+ + WR N PT NL RR +I+ DT CG+ +E ++ L+ C + +
Sbjct: 506 APPKIKHFWWRSAHNALPTAGNLKRRRLITDDT---CQRCGEASEDVNHLLFQCRVSKEI 562
Query: 525 WQQIKTWIGVFFVDPHQVLDHYYQFVYSSANTTEQLLEKVKITSLKWLKAKNVCFPF-GY 583
W+Q H L + +S N + ++K+ ++ K + FPF G+
Sbjct: 563 WEQ-----------AHIKLCPGDSLMSNSFNQNLESIQKLNQSARKDVS----LFPFIGW 607
Query: 584 HLWRQR 589
+W+ R
Sbjct: 608 RIWKMR 613
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 226 bits (575), Expect = 4e-59
Identities = 158/535 (29%), Positives = 250/535 (46%), Gaps = 35/535 (6%)
Query: 4 MGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVLM 63
+GF + W WM CVS+ + SVL+NG P RGLRQGDPLSPFLF+L E L ++
Sbjct: 325 LGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHIL 384
Query: 64 TSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSGLKV 123
A +G P+V +HL FADDTLL+ S + L + ++SG +
Sbjct: 385 NQAEKIGKISGIQFNGTGPSV-NHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMI 443
Query: 124 NYNKSLLV-GINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLERLRS 182
N KS + G + E Q + + YLGLP + + + E+L+S
Sbjct: 444 NSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQS 503
Query: 183 RLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSEDHR 242
RLS W ++ LS GG+ ILLKS+ + PVYA++ FR + + + S+++ F+W +D +
Sbjct: 504 RLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKK 563
Query: 243 KIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGEQGG 302
KI W+ + + K GG G + L FN ALL K R D + L ++L SRY
Sbjct: 564 KIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSD 623
Query: 303 RLK-EGGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTESFM 361
L G S W+ I+ G + K +GNG NT+ W D W+ F
Sbjct: 624 FLSATKGTRPSYAWQSIL--------YGRELLVSGLKKIIGNGENTYVWMDNWI----FD 671
Query: 362 VRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAWEE-ELVVEIRILLTNVTLQ 420
+ RR L I D+ + ++ R L W+E +++ + R +
Sbjct: 672 DKPRRPESLQIMVDIQLKVSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRPMA------ 725
Query: 421 DTESDVWLWRPNIGDGYTVRGVYQMLMRQ----------ERHNYDVVSDAPWHKSAPLKV 470
+ D + W YTV+ Y + RQ E+ + + + W+ ++ K+
Sbjct: 726 -SRQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKI 784
Query: 471 SIWAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALW 525
++ W++L+ +D L RGV+ D C +NET++ ++ CP+ +W
Sbjct: 785 KVFLWKVLKGAVAVEDRLRTRGVLIEDG--CSMCPEKNETLNHILFQCPLARQVW 837
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 226 bits (575), Expect = 4e-59
Identities = 170/551 (30%), Positives = 264/551 (47%), Gaps = 45/551 (8%)
Query: 3 KMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVL 62
KMGF W W+ C++T VL+NG P +RGLRQGDPLSP+LF+L E L
Sbjct: 379 KMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIAN 438
Query: 63 MTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSGLK 122
+ A NL TG + SP V SHL FADD+L + + IL +E++SG +
Sbjct: 439 IRKAERQNLITGIKVATPSPAV-SHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQ 497
Query: 123 VNYNKSLL-VGINIAESWLQEAASILSCKLGKTPFMYLGLP--IGGDARRLCFWDPVLER 179
+N++KS + G + +S + IL YLGLP +GG ++ + V +R
Sbjct: 498 INFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSF--VRDR 555
Query: 180 LRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSE 239
L+SR++ W ++ LS GG+ +++KSV ++LP Y +S FR P I S + S + KF+W +
Sbjct: 556 LQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNG 615
Query: 240 DHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGE 299
D R + W+ W+ +C +K GGLG R + +FN ALL K WR + + L+ +V RY
Sbjct: 616 DSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFR 675
Query: 300 QGGRLKE-GGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTE 358
+ L + S WR +I + S + + KR+G+G + W+D W+ +
Sbjct: 676 KSNPLDSIKSYSPSYGWRSMISAR--------SLVYKGLIKRVGSGASISVWNDPWIPAQ 727
Query: 359 SFMVRFRR--LYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLL--AWEEELVVEIRIL- 413
F R Y SI D S+ +++ N W LL ++ E V I L
Sbjct: 728 -----FPRPAKYGGSI-VDPSLKVKSLIDSRSN----FWNIDLLKELFDPEDVPLISALP 777
Query: 414 LTNVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHNYDVVSD-------APWHKSA 466
+ N ++DT W YTV+ Y ++ W
Sbjct: 778 IGNPNMEDTLG----WHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQC 833
Query: 467 PLKVSIWAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALW- 525
P K+ + W++L P +NL +RG++ + CV+ E+I+ + C +W
Sbjct: 834 PPKLRHFLWQILSGCVPVSENLRKRGILC--DKGCVSCGASEESINHTLFQCHPARQIWA 891
Query: 526 -QQIKTWIGVF 535
QI T G+F
Sbjct: 892 LSQIPTAPGIF 902
>At1g24640 hypothetical protein
Length = 1270
Score = 221 bits (563), Expect = 9e-58
Identities = 149/488 (30%), Positives = 230/488 (46%), Gaps = 35/488 (7%)
Query: 4 MGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVLM 63
+GF W W+ CVS+ T SVL+N P +QRGLRQGDPLSPFLF+L EGL L+
Sbjct: 559 LGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLL 618
Query: 64 TSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSGLKV 123
A G + P V HL FADD+L L S L+ IL ++ N +G +
Sbjct: 619 NKAQWEGALEGIQFSENGPMV-HHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTI 677
Query: 124 NYNKSLLV-GINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLERLRS 182
N NKS + G + E + L YLGLP ++ + +RL+
Sbjct: 678 NLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKE 737
Query: 183 RLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSEDHR 242
+L W +R LS GG+ +LLKSV ++PV+A+S F+ P ++ES + F+W + R
Sbjct: 738 KLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSR 797
Query: 243 KIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGEQGG 302
KI W W +C+ K++GGLG R + FN ALL K WR L + L R+L SRY +
Sbjct: 798 KIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATD 857
Query: 303 RLKEG-GMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTESFM 361
L S WR I+ G + + KR+G+G + F W D W+ F
Sbjct: 858 FLDAALSQRPSFGWRSIL--------FGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFR 909
Query: 362 VRFRR--LYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAWEEELVVEIRILLTNVTL 419
+R+ +YD+++ + N W +L + + E + + +
Sbjct: 910 APWRKNLIYDVTLKVKALL----------NPRTGFWDEEVL--HDLFLPEDILRIKAIKP 957
Query: 420 QDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHNY-DVVSDAP---------WHKSAPLK 469
+++D ++W+ N ++V+ Y + + + N VS P W+ K
Sbjct: 958 VISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPK 1017
Query: 470 VSIWAWRL 477
+ I+ W++
Sbjct: 1018 IKIFLWKV 1025
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 217 bits (552), Expect = 2e-56
Identities = 164/554 (29%), Positives = 252/554 (44%), Gaps = 59/554 (10%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
M +GF W + + ECV + VL+NG+P E RGLRQGDPLSP+LF++ E L
Sbjct: 593 MRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLV 652
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMS- 119
++ SA N TG + +P + SHL FADD++ N AL I+ I E S
Sbjct: 653 KMLQSAEQKNQITGLKVARGAPPI-SHLLFADDSMFY---CKVNDEALGQIIRIIEEYSL 708
Query: 120 --GLKVNYNKS-LLVGINIAESWLQEAASILSCKLGKT----PFMYLGLPIGGDARRLCF 172
G +VNY KS + G +I+E E ++ KLG +YLGLP ++
Sbjct: 709 ASGQRVNYLKSSIYFGKHISE----ERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVAT 764
Query: 173 WDPVLERLRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIK 232
+ +RL ++ W+S LS GG+ ILLK+V +LP Y +S F+ P I IES++ +
Sbjct: 765 LSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAE 824
Query: 233 FFWGGSEDHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRV 292
F+W ++ R + W W + K GGLG + + FN+ALLGK WR + +++ L +V
Sbjct: 825 FWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKV 884
Query: 293 LSSRYGEQGGRLKEG-GMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWS 351
SRY + L G S W+ I + Q ++ I +GNG W+
Sbjct: 885 FKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQ--------VLIKQGIRAVIGNGETINVWT 936
Query: 352 DCWLGTE----------SFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLA 401
D W+G + S +V + + KDL + +G W W L
Sbjct: 937 DPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLL---------PDGRDWNWNLVSLL 987
Query: 402 WEEELVVEIRILLTNVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMR--QERHN------ 453
+ + + IL ++T D + W + Y+V+ Y ++ +R+N
Sbjct: 988 FPDN--TQENILALRPGGKETR-DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQ 1044
Query: 454 --YDVVSDAPWHKSAPLKVSIWAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETI 511
D + W P K+ + WR + N NL R + + CV ET+
Sbjct: 1045 PSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAR--EKSCVRCPSHGETV 1102
Query: 512 DLLIIHCPIFGALW 525
+ L+ CP W
Sbjct: 1103 NHLLFKCPFARLTW 1116
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 217 bits (552), Expect = 2e-56
Identities = 160/541 (29%), Positives = 252/541 (46%), Gaps = 41/541 (7%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
M GF W W+ V + SVL+NGSP RG+RQGDPLSP+LF+L + L+
Sbjct: 749 MRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILS 808
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSG 120
L+ +S G IG +P + +HLQFADD+L + N +AL+ + ++E SG
Sbjct: 809 HLINGRASSGDLRGVRIGNGAPAI-THLQFADDSLFFCQANVRNCQALKDVFDVYEYYSG 867
Query: 121 LKVNYNKSLLV-GINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLER 179
K+N KS++ G + S + IL YLGLP ++ ++ +++R
Sbjct: 868 QKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDR 927
Query: 180 LRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSE 239
++ R S W +R LS G+ I+LKSV ++PVYA+S F+ P GI+S IES+L+ F+W +
Sbjct: 928 VKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKAS 987
Query: 240 DHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGE 299
+ R I WV W + +K+ GGLG R L +FN ALL K WR + L+ RV+ +RY +
Sbjct: 988 NQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFK 1047
Query: 300 QGGRLKEGGMTGSAW-WREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTE 358
L ++ W ++ +G + ++ +G+G N D + +
Sbjct: 1048 DVSILDAKVRKQQSYGWASLL--------DGIALLKKGTRHLIGDGQNIRIGLDNIVDSH 1099
Query: 359 SFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAW---EEELVVEIRILLT 415
R L +K++++ + + G + W ++ + + RI L
Sbjct: 1100 P----PRPLNTEETYKEMTINNL----FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLA 1151
Query: 416 NVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHNYDVVSDAPWHKSAPLKVSIW-- 473
+ + D +W N YTVR Y +L N ++ P H S LK IW
Sbjct: 1152 ----KSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAIN--PPHGSIDLKTRIWNL 1205
Query: 474 ---------AWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGAL 524
WR L T + L RG+ C +NE+I+ + CP
Sbjct: 1206 PIMPKLKHFLWRALSQALATTERLTTRGM--RIDPICPRCHRENESINHALFTCPFATMA 1263
Query: 525 W 525
W
Sbjct: 1264 W 1264
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 216 bits (551), Expect = 2e-56
Identities = 160/542 (29%), Positives = 253/542 (46%), Gaps = 41/542 (7%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
M GF W W+ V + SVL+NGSP RG+RQGDPLSP+LF+L + L+
Sbjct: 975 MRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILS 1034
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSG 120
L+ +S G IG +P + +HLQFADD+L + N +AL+ + ++E SG
Sbjct: 1035 HLINGRASSGDLRGVRIGNGAPAI-THLQFADDSLFFCQANVRNCQALKDVFDVYEYYSG 1093
Query: 121 LKVNYNKSLLV-GINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLER 179
K+N KS++ G + S IL YLGLP ++ ++ +++R
Sbjct: 1094 QKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDR 1153
Query: 180 LRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSE 239
++ R S W +R LS G+ I+LKSV ++PVYA+S F+ P GI+S IES+L+ F+W +
Sbjct: 1154 VKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKAS 1213
Query: 240 DHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGE 299
+ R I WV W + +K+ GGLG R L +FN ALL K WR + L+ RV+ +RY +
Sbjct: 1214 NQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFK 1273
Query: 300 QGGRLKEGGMTGSAW-WREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTE 358
L ++ W ++ +G + ++ +G+G N D + +
Sbjct: 1274 DVSILDAKVRKQQSYGWASLL--------DGIALLKKGTRHLIGDGQNIRIGLDNIVDSH 1325
Query: 359 SFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAW---EEELVVEIRILLT 415
R L +K++++ + + G + W ++ + + RI L
Sbjct: 1326 P----PRPLNTEETYKEMTINNL----FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLA 1377
Query: 416 NVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHNYDVVSDAPWHKSAPLKVSIW-- 473
+ + D +W N YTVR Y +L N ++ P H S LK IW
Sbjct: 1378 ----KSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAIN--PPHGSIDLKTRIWNL 1431
Query: 474 ---------AWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGAL 524
WR L T + L RG+ + C +NE+I+ + CP
Sbjct: 1432 PIMPKLKHFLWRALSQALATTERLTTRGMRIDPS--CPRCHRENESINHALFTCPFATMA 1489
Query: 525 WQ 526
W+
Sbjct: 1490 WR 1491
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 214 bits (544), Expect = 1e-55
Identities = 156/538 (28%), Positives = 251/538 (45%), Gaps = 41/538 (7%)
Query: 4 MGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVLM 63
+GF W W+ CV++ T SVL+NG +RG+RQGDP+SPFLF+L E L ++
Sbjct: 548 LGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHIL 607
Query: 64 TSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSGLKV 123
A NS +G P+V +HL F DDT L+ + ++ + L + ++SG +
Sbjct: 608 QQAENSKKVSGIQFNGSGPSV-NHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLI 666
Query: 124 NYNKSLLV-GINIAES---WLQEAASI-LSCKLGKTPFMYLGLPIGGDARRLCFWDPVLE 178
N KS + G+ + E W++ + I L GK YLGLP + + + E
Sbjct: 667 NVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGK----YLGLPENLSGSKQDLFGYIKE 722
Query: 179 RLRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGS 238
+L+S LS W + LS GG+ ILLKS+ +LPVY ++ FR P G+ + + S+++ F+W
Sbjct: 723 KLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSM 782
Query: 239 EDHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYG 298
E KI W+ + + K GG G + L FN ALL K WR D + + ++ SRY
Sbjct: 783 EFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYF 842
Query: 299 EQGGRLK-EGGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGT 357
L G S WR I+ G + + +GNG T W D WL
Sbjct: 843 MNTDFLNARQGTRPSYTWRSIL--------YGRELLNGGLKRLIGNGEQTNVWIDKWL-- 892
Query: 358 ESFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAWEEELVVEIRILLTNV 417
F RR +L ++ + +++ W ++ + E+ ++++++
Sbjct: 893 --FDGHSRRPMNLHSLMNIHMKVSHLI--DPLTRNWNLKKLTELFHEK---DVQLIMHQR 945
Query: 418 TLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHN-------YDVVS---DAPWHKSAP 467
L +E D + W YTV+ Y+ R+ N Y V+ D W
Sbjct: 946 PLISSE-DSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETV 1004
Query: 468 LKVSIWAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALW 525
K+ ++ W+ L+ +D L RG+ + D C+ + ETI+ L+ CP +W
Sbjct: 1005 PKIKVFMWKALKGALAVEDRLRSRGIRTADG--CLFCKEEIETINHLLFQCPFARQVW 1060
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 213 bits (543), Expect = 2e-55
Identities = 156/535 (29%), Positives = 243/535 (45%), Gaps = 34/535 (6%)
Query: 5 GFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVLMT 64
G P W +W+ +CV ++ +L NG TD F RGLRQGDPLSP+LF+L E L L+
Sbjct: 1136 GLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIE 1195
Query: 65 SAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSGLKVN 124
S++ + + I P LSH+ FADD +L S +R LR +L F SG KV+
Sbjct: 1196 SSIAAKKWKPIKISQSGPR-LSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVS 1254
Query: 125 YNKS-LLVGINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLERLRSR 183
KS + N+ + + K K YLG+PI + V++R SR
Sbjct: 1255 LEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSR 1314
Query: 184 LSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSEDHRK 243
L+ WK R LS+ GRL L K+VL+S+ V+ +S + P + ++ + F WG + + +K
Sbjct: 1315 LAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKK 1374
Query: 244 IAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGEQGGR 303
V W +C+ + GGLG+R N AL+ K WR L D LW +V+ S+Y
Sbjct: 1375 QHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVH 1434
Query: 304 LKEGGMTGSAW---WREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLG---- 356
+ + S W WR + GVG+ W E+ +G+G FW+D WL
Sbjct: 1435 DRNWTVAKSNWSSTWRSV-----GVGLRDVIWREQHWV--IGDGRQIRFWTDRWLSETPI 1487
Query: 357 TESFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRR-RLLAWEEELVVEIRILLT 415
+ +V L +DL W +G W + + + + + +++
Sbjct: 1488 ADDSIVPLSLAQMLCTARDL---------W-RDGTGWDMSQIAPFVTDNKRLDLLAVIVD 1537
Query: 416 NVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHNYDVVS--DAPWHKSAPLKVSIW 473
+VT D W +TV+ + ML + D+ S W AP +V ++
Sbjct: 1538 SVT---GAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVF 1594
Query: 474 AWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALWQQI 528
W ++ T RR + D+ C G E+I ++ CP +W +I
Sbjct: 1595 LWLVVNQAIMTNSERKRRHLC--DSDVCQVCRGGIESILHVLRDCPAMSGIWDRI 1647
>At3g45550 putative protein
Length = 851
Score = 213 bits (541), Expect = 3e-55
Identities = 172/596 (28%), Positives = 277/596 (45%), Gaps = 47/596 (7%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
M GF W W+ V + SVL+NGSP RG+RQGDPLSP+LF+L + L+
Sbjct: 214 MRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILS 273
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSG 120
L+ +S G IG +P + +HLQFADD+L + N +AL+ + ++E SG
Sbjct: 274 HLIKVKASSGDIRGVRIGNGAPAI-THLQFADDSLFFCQANVRNCQALKDVFDVYEYYSG 332
Query: 121 LKVNYNKSLLV-GINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLER 179
K+N KSL+ G + S ++L+ YLGLP ++ ++ +++R
Sbjct: 333 QKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDR 392
Query: 180 LRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSE 239
++ R + W ++ LS G+ ILLKSV ++PVYA+S F+ P GI+S IES+L+ F+W +
Sbjct: 393 VKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKAS 452
Query: 240 DHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGE 299
+ R I WV W + +K+ GGLG R L +FN ALL K WR + L+ RV+ +RY +
Sbjct: 453 NKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFK 512
Query: 300 QGGRLKEGGMTGSAW-WREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTE 358
+ + ++ W ++ G + + +G+G LG +
Sbjct: 513 DNSIIDAKTRSQQSYGWSSLL--------SGIALLRKGTRYVIGDG------KTIRLGID 558
Query: 359 SFMVRF--RRLYDLSIHKDLSVGEMNILGWGENGEAWRW-RRRLLAWEEELVVEI--RIL 413
+ + R L H LS+ + + G + W +L + ++ + RI
Sbjct: 559 NVVDSHPPRPLLTDEQHNGLSLDNL----FQHRGHSRCWDNAKLQTFVDQSDHDYIKRIY 614
Query: 414 LTNVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHNYDVVSDAPWHKSAPLKVSIW 473
L+ +++D +W N YTVR Y + + + + A H S LK IW
Sbjct: 615 LST----RSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSNT--IPTMAKPHGSVDLKTKIW 668
Query: 474 -----------AWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFG 522
WR+L PT D L RG+ C +NE+I+ + CP
Sbjct: 669 NLPIMPKLKHFLWRILSKALPTTDRLTTRGM--RIDPGCPRCRRENESINHALFTCPFAT 726
Query: 523 ALWQQIKTWIGVFFVDPHQVLDHYYQFVYSSANTTEQLLEKVKITSLKW--LKAKN 576
W+ T + + + + D+ + NTT +K+ L W KA+N
Sbjct: 727 MAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARN 782
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 212 bits (539), Expect = 5e-55
Identities = 153/532 (28%), Positives = 239/532 (44%), Gaps = 33/532 (6%)
Query: 3 KMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVL 62
+ GF ++W W+ ECV++ + S L+NG+P + RGLRQGDPLSP LF+L E L+ L
Sbjct: 490 RFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGL 549
Query: 63 MTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSGLK 122
T A G + ++ P V +HL FADDT+ + L IL + SG
Sbjct: 550 CTRAQRLRQLPGVRVSINGPRV-NHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQS 608
Query: 123 VNYNKSLLV-GINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLERLR 181
+N++KS + S + IL + YLGLP R+ + +++++R
Sbjct: 609 INFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIR 668
Query: 182 SRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSEDH 241
+ W SR LS G+ ++LK+VL+S+P+Y++S F+ P+ + I+S+L +F+W D
Sbjct: 669 QKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDV 728
Query: 242 RKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGEQG 301
RK +WV W+ + K AGGLG R + N +LL K WR L E L R+L +Y
Sbjct: 729 RKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSS 788
Query: 302 GRLK-EGGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTESF 360
++ + S WR II G +E + + NG W+D WL
Sbjct: 789 SFMECKLPSQPSHGWRSII--------AGREILKEGLGWLITNGEKVSIWNDPWLSISKP 840
Query: 361 MVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRR--RLLAWEEELVVEIRILLTNVT 418
+V L H+DL V + +N W W + +L E L+ + L +
Sbjct: 841 LVPIGPA--LREHQDLRVSAL----INQNTLQWDWNKIAVILPNYENLIKQ----LPAPS 890
Query: 419 LQDTESDVWL----WRPNIGDGYTVRGVYQMLMRQERHNYDVVSDAPWHKSAPLKVSIWA 474
+ + WL + GY + V + + Q + N+ W K+
Sbjct: 891 SRGVDKLAWLPVKSGQYTSRSGYGIASVASIPIPQTQFNW---QSNLWKLQTLPKIKHLM 947
Query: 475 WRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALWQ 526
W+ P LVRR + CG E+ L HC +W+
Sbjct: 948 WKAAMEALPVGIQLVRRHI---SPSAACHRCGAPESTTHLFFHCEFAAQVWE 996
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 209 bits (533), Expect = 3e-54
Identities = 158/536 (29%), Positives = 246/536 (45%), Gaps = 47/536 (8%)
Query: 3 KMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVL 62
++GF W +W+ +CV T + S L+NGSP RGLRQGDPLSP+LF+L E L+ L
Sbjct: 536 RLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGL 595
Query: 63 MTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSGLK 122
A + G + SP V +HL FADDT+ + AL +IL +E SG
Sbjct: 596 CRKAQEKGVMVGIRVARGSPQV-NHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQS 654
Query: 123 VNYNKSLLVGINIAESWLQEAASILSCKLGKTPFM--YLGLPIGGDARRLCFWDPVLERL 180
+N KS + + ++ LS ++ + YLGLP R+ + +++R+
Sbjct: 655 INLAKSAITFSSKTPQDIKRRVK-LSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRI 713
Query: 181 RSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSED 240
R R W R LS G+ ILLK+VLSS+P YA+ F+ PA + I+S+L +F+W D
Sbjct: 714 RQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPD 773
Query: 241 HRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGEQ 300
RK+AWV W+ + + GGLG R + K WR L + L RVL +Y
Sbjct: 774 KRKMAWVSWDKLTLPINEGGLGFRE-------IEAKLSWRILKEPHSLLSRVLLGKYCNT 826
Query: 301 GGRL--KEGGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGTE 358
+ S WR I+ G + + +G G + W++ WL
Sbjct: 827 SSFMDCSASPSFASHGWRGIL--------AGRDLLRKGLGWSIGQGDSINVWTEAWLSPS 878
Query: 359 SFMVRFRRLYDLSIHKDLSVGEM---NILGWGENGEAWRWRRRLLAWEEELVVEIRILLT 415
S +KDLSV ++ ++ W N EA R+ L +E+++ +I +
Sbjct: 879 SPQTPIGP--PTETNKDLSVHDLICHDVKSW--NVEA--IRKHLPQYEDQI---RKITIN 929
Query: 416 NVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHNYDVVSDAPWHKS-----APLKV 470
+ LQD+ +W P YT + Y + + D W K+ KV
Sbjct: 930 ALPLQDS----LVWLPVKSGEYTTKTGYALAKLNSFPASQL--DFNWQKNIWKIHTSPKV 983
Query: 471 SIWAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALWQ 526
+ W+ ++ P + L RR + + + CGQ E+ L++ CP +W+
Sbjct: 984 KHFLWKAMKGALPVGEALSRRNI---EAEVTCKRCGQTESSLHLMLLCPYAKKVWE 1036
>At4g10830 putative protein
Length = 1294
Score = 208 bits (530), Expect = 6e-54
Identities = 115/298 (38%), Positives = 172/298 (57%), Gaps = 2/298 (0%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
M GF W KW+ V + SVLVNG P QRG+RQGDPLSP+LF+L A+ LN
Sbjct: 955 MRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILN 1014
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSG 120
L+ + V G IG P V +HLQFADD+L + N +AL+ + ++E SG
Sbjct: 1015 HLIKNRVAEGDIRGIRIGNGVPGV-THLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSG 1073
Query: 121 LKVNYNKSLLV-GINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLER 179
K+N +KS++ G + + +IL + YLGLP ++ ++ ++ER
Sbjct: 1074 QKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIER 1133
Query: 180 LRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSE 239
++ R S W ++ LS G+ I+LKSV S+PVYA+S F+ P I+S IE++L+ F+W +
Sbjct: 1134 VKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNA 1193
Query: 240 DHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRY 297
R+I W+ W + +K+ GGLG R L +FN ALL K WR + + L+ R++ +RY
Sbjct: 1194 KKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARY 1251
>At1g51750 hypothetical protein
Length = 629
Score = 203 bits (517), Expect = 2e-52
Identities = 168/542 (30%), Positives = 239/542 (43%), Gaps = 45/542 (8%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
+ M FP + W+ C++T + SV VNG F RG+RQG LSP+LF+++ E L+
Sbjct: 21 LSAMNFPGEFIHWISRCITTTSFSVQVNGELAGYFRSARGIRQGCALSPYLFVISMEVLS 80
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTV---LSHLQFADDTLLLGVKSWANVRALRSILVIFEN 117
++ A F G H L+HL FADD ++L +V + ++ +F
Sbjct: 81 KMLDQAAGGKRF-----GFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAK 135
Query: 118 MSGLKVNYNKSLLVGINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWD--P 175
SGL++N K+ L +++ S LG+ P YLGLP+ +RL D P
Sbjct: 136 RSGLQINMEKTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYLGLPLV--TKRLTKEDLSP 193
Query: 176 VLERLRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFW 235
+ E++R+R+ W SR LS+ GRL L+ SVL S + +S FR P+ + I SI F W
Sbjct: 194 LFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLW 253
Query: 236 GGSEDHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFR--VL 293
G E HR+ A V W+ IC K+ GGLG+R L E NV + K WR + + LW + +
Sbjct: 254 SGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKM 313
Query: 294 SSRYGEQGGRLKEGGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDC 353
+ E L GS W++++K + E F + NG T FW D
Sbjct: 314 NLLKQESFWSLTPNSSLGSWMWKKMLKYR-----ETAKPFSR---VEVNNGARTSFWFDN 365
Query: 354 WLGTESFM--VRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAWEEEL-VVEI 410
W G M R DL I ++ +V EAW RRR E+L +E
Sbjct: 366 WSGMGHLMDVTGQRGQIDLGISRNKTV-----------AEAWSNRRRRKHRTEQLNDIEA 414
Query: 411 RILLTNVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQERHNYDVVS--DAPWHKSAPL 468
+ T D LWR GD + + Q R + V+ W +
Sbjct: 415 ALNQKYQTRNLLREDATLWRGK-GDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHSTP 473
Query: 469 KVSIWAWRLLRNRWPT--KDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALWQ 526
K W LRNR T + L G FC T ET D L C A+W
Sbjct: 474 KYQFCTWLALRNRLSTGYRMQLWNNG-SDVKCTFCSTSI---ETRDHLFFSCSYASAIWT 529
Query: 527 QI 528
I
Sbjct: 530 AI 531
>At1g31030 F17F8.5
Length = 872
Score = 201 bits (511), Expect = 1e-51
Identities = 157/541 (29%), Positives = 244/541 (45%), Gaps = 54/541 (9%)
Query: 4 MGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVLM 63
M F + W+ C++TA+ SV VNG F +RGLRQG LSP+LF++ + L+ ++
Sbjct: 266 MNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKML 325
Query: 64 TSAVNSNLFTGYSIGMHSPTV---LSHLQFADDTLLLGVKSWANVRALRSILVIFENM-- 118
A F G H L+HL FADD ++L S R++ IL +F+
Sbjct: 326 DKAAGVRKF-----GFHPKCQRLGLTHLSFADDLMVL---SDGKTRSIEGILEVFDEFCK 377
Query: 119 -SGLKVNYNKSLLVGINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVL 177
SGL+++ KS L ++ QE A+ +G+ P YLGLP+ + P+L
Sbjct: 378 RSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLL 437
Query: 178 ERLRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGG 237
E+++ R++ W R S+ GR L+KSVL S+ + L+ FR P I I+ + F W G
Sbjct: 438 EQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSG 497
Query: 238 SEDHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRY 297
SE A + W+ +C K GGLG+R L E N K WR + + LW + ++
Sbjct: 498 SEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYL 557
Query: 298 GEQGG--RLKEGGMTGSAWWREIIKIQNGVGVEGGSWFEESISK-RLGNGFNTFFWSDCW 354
+ LK+ GS WR+I+KI++ +S S+ +GNG + FW D W
Sbjct: 558 IRKKSIWSLKQSTSMGSWIWRKILKIRD---------VAKSFSRVEVGNGESASFWYDHW 608
Query: 355 L--GTESFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAWEEELVVEIRI 412
G V + DL I ++ SV + W R R LL EE++ RI
Sbjct: 609 SAHGRLIDTVGDKGTIDLGIPREASVAD----AWTRRSRR-RHRTSLLNEIEEMMAYQRI 663
Query: 413 LLTNVTLQDTESDVWLWRPN---IGDGYTVRGVYQMLMRQERHNYDVVSDAPWHKS---- 465
++ D LWR ++ R + ++ S WHK
Sbjct: 664 HHSDA------EDTVLWRGKNDVFKPHFSTRDTWHLIKATS-------STVSWHKGVWFR 710
Query: 466 -APLKVSIWAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGAL 524
A K ++ W + NR PT D +++ + CV ++T++ L C +
Sbjct: 711 HATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTV 770
Query: 525 W 525
W
Sbjct: 771 W 771
>At1g47850 hypothetical protein
Length = 799
Score = 198 bits (504), Expect = 6e-51
Identities = 165/599 (27%), Positives = 268/599 (44%), Gaps = 56/599 (9%)
Query: 4 MGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVLM 63
+ FP + W+K C+STAT SV VNG F +RGLRQG LSP+LF++ L+ ++
Sbjct: 192 LNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMI 251
Query: 64 -TSAVNSNLFTGYSIGMH---SPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMS 119
+AV+ N IG H L+HL FADD ++ +V + +I F S
Sbjct: 252 DVAAVHRN------IGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKS 305
Query: 120 GLKVNYNKSLLVGINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLER 179
GL ++ KS L ++E S G+ P YLGLP+ + P+L++
Sbjct: 306 GLHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDK 365
Query: 180 LRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSE 239
+RS++S W +R+LSY GRL L+ SV+ SL + +S +R PAG I IE + F W G E
Sbjct: 366 VRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPE 425
Query: 240 DHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGE 299
+ K A + W ++C K+ GGLG++ LLE N K WR + + LW + +
Sbjct: 426 LNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIR 485
Query: 300 QGG--RLKEGGMTGSAWWREIIKIQNGVGVEGGSWFEESISK-RLGNGFNTFFWSDCW-- 354
+G + GS W++++K ++ +S+ K + +G +T FW D W
Sbjct: 486 KGSFWSANDRSSLGSWMWKKLLKYRD---------VAKSMCKVEIKSGSSTSFWYDNWSQ 536
Query: 355 LGTESFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAWEEELVVEIRILL 414
LG + RR D+ I L+ +L + R + A ++ EI+ +L
Sbjct: 537 LGQLVDVTNARRTIDMGI--PLAATVATVLA------SHRTKHHRTAIYNKIEAEIQSIL 588
Query: 415 TNVTLQDTESDVWLWRPNIGDGYTVRGVYQMLMRQER--HNYDVVSDAPWHKSAPLKVSI 472
+ D++LWR + GD + + ++ R H + W K S
Sbjct: 589 QRE--RSGAPDIFLWRSS-GDNFRQSFITKVTWHNIRVIHTHRQWYKGVWFSYNTPKYSF 645
Query: 473 WAWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALWQQIKTWI 532
W + +R T D + + S CV E+ + L C A+W +
Sbjct: 646 LLWLAIHDRLSTGDRIKKWN--SGQQVNCVLCGNVEESRNHLFFSCHYTTAIWDNL---- 699
Query: 533 GVFFVDPHQVLDHYYQFVYSS--ANTTEQLLEKVKITSLKWLKAKNVCFPFGYHLWRQR 589
++L H Y + A + K + +++ ++ YH+WR+R
Sbjct: 700 ------TRRLLSHEYSTDWDRLLALLCSSTMSKDSLFLFRYVFQASL-----YHVWRER 747
>At2g11240 pseudogene
Length = 1044
Score = 198 bits (503), Expect = 8e-51
Identities = 118/357 (33%), Positives = 180/357 (50%), Gaps = 11/357 (3%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
M +MGF W W+ +C++T + S L+NGS +RGLRQGDPLSPFLF++ +E L+
Sbjct: 419 MQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLS 478
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSG 120
L A G + +P V +HL FADDT+ + + IL +E SG
Sbjct: 479 GLCRKAQLDGSLLGLRVSKGNPRV-NHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASG 537
Query: 121 LKVNYNKSLLVGINIAESWLQ-EAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLER 179
+N +KS + ++ EA IL +L YLGLP ++ ++ +++R
Sbjct: 538 QMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDR 597
Query: 180 LRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSE 239
+R R W SR LS G+ +LKSVL+S+P Y +S F+ + I+S L F+W S
Sbjct: 598 IRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSA 657
Query: 240 DHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGE 299
D +K+ W+ W+ + NK+ GGLG + + FN ALL K WR + + R+L +Y
Sbjct: 658 DKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCR 717
Query: 300 QGGRLKEGGMTGSA-WWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWL 355
L S+ WR I G + + K +G+G +T W++ WL
Sbjct: 718 TSSFLDCSVTAASSHGWRGI--------CTGKDLIKSQLGKVIGSGLDTLVWNEPWL 766
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 195 bits (495), Expect = 7e-50
Identities = 155/541 (28%), Positives = 238/541 (43%), Gaps = 59/541 (10%)
Query: 1 MGKMGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLN 60
M ++GF W KW+ CV++ + VL+NGSP + + RG+RQGDPLSP+LFL AE L+
Sbjct: 955 MIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLS 1014
Query: 61 VLMTSAVNSNLFTGYSIGMHSPTVLSHLQFADDTLLLGVKSWANVRALRSILVIFENMSG 120
++ A + G I +SHL FADD+L S N+ L I +E SG
Sbjct: 1015 NMLRKAEVNKQIHGMKI-TKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASG 1073
Query: 121 LKVNYNK-SLLVGINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLER 179
K+NY K S++ G I Q +L + YLGLP R++ ++ ++ +
Sbjct: 1074 QKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTK 1133
Query: 180 LRSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSE 239
++ R W LS G+ I++K++ +LPVY+++ F P I + I S++ F+WG
Sbjct: 1134 VKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWG--- 1190
Query: 240 DHRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRYGE 299
+ G LG + L +FN ALL K WR L + + L R+ Y
Sbjct: 1191 ---------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYP 1235
Query: 300 QGG--RLKEGGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCWLGT 357
R +GG W N + EG ++ + RLG+G T W D WL T
Sbjct: 1236 NTTYLRANKGGHASYGW--------NSI-QEGKLLLQQGLRVRLGDGQTTKIWEDPWLPT 1286
Query: 358 ESFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAWEEELVVEIRILLTNV 417
+ R + +D+ V ++ W EN W + +E L E + L ++
Sbjct: 1287 ----LPPRPARGPILDEDMKVADL----WRENKREW----DPVIFEGVLNPEDQQLAKSL 1334
Query: 418 TLQD-TESDVWLWRPNIGDGYTVRGVYQMLMRQERHNYDVVSDAPWHKSAPLKVSIW--- 473
L + D + W YTVR Y + ++++ P PLK IW
Sbjct: 1335 YLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIIN--PLEGDVPLKQEIWRLK 1392
Query: 474 --------AWRLLRNRWPTKDNLVRRGVISYDTQFCVTGCGQNETIDLLIIHCPIFGALW 525
WR L T L R + + T C C +ETI+ +I C +W
Sbjct: 1393 ITPKIKHFIWRCLSGALSTTTQLRNRNIPADPT--CQRCCNADETINHIIFTCSYAQVVW 1450
Query: 526 Q 526
+
Sbjct: 1451 R 1451
>At3g44650 putative protein
Length = 762
Score = 193 bits (490), Expect = 3e-49
Identities = 149/533 (27%), Positives = 235/533 (43%), Gaps = 51/533 (9%)
Query: 4 MGFPTLWRKWMKECVSTATVSVLVNGSPTDEFYMQRGLRQGDPLSPFLFLLAAEGLNVLM 63
M FP ++ W++ C++T + SV VNG F RGLRQG LSP+LF++ + L+ L+
Sbjct: 172 MHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLL 231
Query: 64 TSAVNSNLFTGYSIGMHSPTV---LSHLQFADDTLLLGVKSWANVRALRSILVIFENMSG 120
V IG H L+HL FADD ++L ++ + + +F SG
Sbjct: 232 DKVVGIG-----RIGYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSG 286
Query: 121 LKVNYNKSLLVGINIAESWLQEAASILSCKLGKTPFMYLGLPIGGDARRLCFWDPVLERL 180
LK++ KS + ++ + + + ++G+ P YLGLP+ + P++E++
Sbjct: 287 LKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQI 346
Query: 181 RSRLSEWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKFFWGGSED 240
R R+ W SR LS+ GR L+ S++ S + LS F+ P I IE + F W G+
Sbjct: 347 RKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNL 406
Query: 241 HRKIAWVDWNTICMNKEAGGLGVRRLLEFNVALLGKWCWRCLVDREGLWFRVLSSRY--G 298
+ K A + WN +C K GGLG+R L E N K WR + + LW + +
Sbjct: 407 NSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKR 466
Query: 299 EQGGRLKEGGMTGSAWWREIIKIQNGVGVEGGSWFEESISKRLGNGFNTFFWSDCW--LG 356
E +KE GS W++I+K + GV + +GNG +T FW D W LG
Sbjct: 467 EIFWIVKENANLGSWIWKKILKYR-GVA-------KRFCKAEVGNGESTSFWFDDWSLLG 518
Query: 357 TESFMVRFRRLYDLSIHKDLSVGEMNILGWGENGEAWRWRRRLLAWEEELVVEIRILLT- 415
+ R D+ I + +SV +AW RRR +E L +L T
Sbjct: 519 RLIDVAGIRGTIDMGISRTMSV-----------ADAWTSRRRRHHRQEILNTIEEVLSTQ 567
Query: 416 -NVTLQDTESDVWLWRPN---IGDGYTVRGVYQMLMRQERHNYDVVSDAPWHKS-----A 466
Q + LW+ D ++ + + L ++ WHK A
Sbjct: 568 HQKRTQQQQQGRVLWKGKNDIYKDKFSTKNTWNYLRTTS-------NEVAWHKGVWFPHA 620
Query: 467 PLKVSIWAWRLLRNRWPTKDNLVR--RGVISYDTQFCVTGCGQNETIDLLIIH 517
K S W +R T +++ RG D FC G + + + +H
Sbjct: 621 TPKYSFCLWLAAHDRLATGARMIKWNRGETG-DCTFCRQGIETRDHLFFMQLH 672
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.140 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,523,817
Number of Sequences: 26719
Number of extensions: 646641
Number of successful extensions: 1932
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 135
length of query: 597
length of database: 11,318,596
effective HSP length: 105
effective length of query: 492
effective length of database: 8,513,101
effective search space: 4188445692
effective search space used: 4188445692
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146549.11