BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146343.12 + phase: 0 /pseudo
         (176 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g10360 40S ribsomal protein S6                                     328  1e-90
At4g31700 ribosomal protein S6 - like                                 327  2e-90
At3g44110 dnaJ protein homolog atj3                                    28  1.9
At1g02460 polygalacturonase PG1, putative                              28  3.3
At5g42520 unknown protein                                              27  5.7
At3g45850 kinesin-related protein - like                               27  5.7
At1g64290 hypothetical protein                                         27  7.4
At1g80150 unknown protein                                              26  9.6

>At5g10360 40S ribsomal protein S6
          Length = 249

 Score =  328 bits (840), Expect = 1e-90
 Identities = 158/174 (90%), Positives = 165/174 (94%)

Query: 1   FNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFP 60
           FNVANPTTGCQKKLEIDDDQKLRAF+DKR+SQEV+GDALGEEFKGYVFKI GGCDKQGFP
Sbjct: 3   FNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFP 62

Query: 61  MKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGEND 120
           MKQGVLTPGRVRLLLHRGTPCFRGHGRR GERRRKSVRGCIVSPDLSVLNLVIVKKG +D
Sbjct: 63  MKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSD 122

Query: 121 LPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKDGAKLPR 174
           LPGLTD EKPRMRGPKRASKIRKLFNL K+DDVRKYVNTYRRTFT K G K+ +
Sbjct: 123 LPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSK 176


>At4g31700 ribosomal protein S6 - like
          Length = 250

 Score =  327 bits (839), Expect = 2e-90
 Identities = 158/174 (90%), Positives = 164/174 (93%)

Query: 1   FNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFP 60
           FNVANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKI GGCDKQGFP
Sbjct: 3   FNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFP 62

Query: 61  MKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGEND 120
           MKQGVLTPGRVRLLLHRGTPCFRGHGRR GERRRKSVRGCIVSPDLSVLNLVIVKKGEND
Sbjct: 63  MKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGEND 122

Query: 121 LPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKDGAKLPR 174
           LPGLTD EKPRMRGPKRASKIRKLFNL K+DDVR YVNTYRR FT K G ++ +
Sbjct: 123 LPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSK 176


>At3g44110 dnaJ protein homolog atj3
          Length = 420

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 3/67 (4%)

Query: 52  GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRR-KSVRGCIVSPDLSVLN 110
           GGC   G  +    L PG ++ + H    C +G G    +R R    +G  V P+  VL 
Sbjct: 165 GGCQGSGMKVSIRQLGPGMIQQMQHACNEC-KGTGETINDRDRCPQCKGDKVIPEKKVLE 223

Query: 111 LVIVKKG 117
            V V+KG
Sbjct: 224 -VNVEKG 229


>At1g02460 polygalacturonase PG1, putative
          Length = 491

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 19/60 (31%), Positives = 27/60 (44%), Gaps = 6/60 (10%)

Query: 15  EIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKI-----TGGC-DKQGFPMKQGVLTP 68
           E DD +  +  WD   + E N D++     GY F I     TG C   Q F +   ++TP
Sbjct: 101 ETDDTEAFKTAWDSSCNNENNTDSVLLVPYGYTFMIQSTIFTGPCRSYQFFQVDGTIVTP 160


>At5g42520 unknown protein
          Length = 342

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 104 PDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRK--YVNTYR 161
           P  S L     K+G+   P  T       RGPK   K++K      +DD+ K  +V T  
Sbjct: 156 PAGSTLESAKPKRGKRVNPKATTQTAANKRGPKNQRKVKK----ESEDDLNKIMFVKT-T 210

Query: 162 RTFTTKDGAK 171
             +T +D +K
Sbjct: 211 HDYTDEDSSK 220


>At3g45850 kinesin-related protein - like
          Length = 1058

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 17/20 (85%)

Query: 19   DQKLRAFWDKRISQEVNGDA 38
            ++ LRAF D+++S++ NGDA
Sbjct: 1006 EELLRAFRDEKLSKQANGDA 1025


>At1g64290 hypothetical protein
          Length = 364

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 5/46 (10%)

Query: 94  RKSVRGCIVSPDLSVLNLVIVKKGEND-----LPGLTDVEKPRMRG 134
           R S RGC+ + +   LNLV  KK  +D      P  +D E+  + G
Sbjct: 312 RSSDRGCLYNINAEKLNLVYAKKEGSDCSFVCFPFCSDYERVDLNG 357


>At1g80150 unknown protein
          Length = 397

 Score = 26.2 bits (56), Expect = 9.6
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 104 PDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRT 163
           P  +   +  V    N + GL  +E+P +   K      KL+NL K +   + V   R  
Sbjct: 14  PSSAATGIAYVSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKANATNRLVIENRFA 73

Query: 164 F 164
           F
Sbjct: 74  F 74


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,332,878
Number of Sequences: 26719
Number of extensions: 188155
Number of successful extensions: 375
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 8
length of query: 176
length of database: 11,318,596
effective HSP length: 93
effective length of query: 83
effective length of database: 8,833,729
effective search space: 733199507
effective search space used: 733199507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)