BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146341.2 - phase: 0 /pseudo
         (875 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g00440 unknown protein                                              57  6e-08
At2g45900 hypothetical protein                                         48  3e-05
At3g61380 putative protein                                             31  2.6
At1g63670 unknown protein                                              31  3.5

>At4g00440 unknown protein
          Length = 831

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 1  MAKKSQRRAV-RYEKDKAGCMWGFISMLDFRHGHSTRKLIADKRRSS 46
          MAKK+QRRA  R E+++ GCMWGF++M  FRHG    KL+ D++ +S
Sbjct: 1  MAKKTQRRAAARQEREQLGCMWGFMNMFSFRHGPLAHKLLLDQKHAS 47


>At2g45900 hypothetical protein
          Length = 720

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 23/47 (48%), Positives = 32/47 (67%), Gaps = 2/47 (4%)

Query: 1  MAKKSQRRAVRYEKDKAGCMWGFISMLDFRHGHSTRKLIADKRRSSK 47
          M K+  RR +   ++  GC+W F+SM DFRHG S +KL+ DK+R SK
Sbjct: 1  MEKEICRRHL--SREGLGCVWVFMSMFDFRHGGSNQKLLMDKKRRSK 45


>At3g61380 putative protein
          Length = 718

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 1  MAKKSQRRAVRYEKDKAGCMWGFISMLDFRHGHSTRKLIADKRRSSKHSEG 51
          M +  +R   R   +  GC+W FIS+     G + ++L+ D +R SK   G
Sbjct: 1  MERNCRRNLEREGINGIGCVWVFISLF----GSNQKRLLMDNKRGSKRVSG 47


>At1g63670 unknown protein
          Length = 689

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 1/41 (2%)

Query: 12 YEKDKAGCMWGFISMLDFRHGHS-TRKLIADKRRSSKHSEG 51
          YE  K+GC W  I   DF H  S  ++L ++K++  + S G
Sbjct: 25 YESYKSGCGWKLIKFFDFGHVKSGNKRLGSEKKKFVRDSAG 65


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.374    0.166    0.667 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,779,838
Number of Sequences: 26719
Number of extensions: 550820
Number of successful extensions: 2774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2769
Number of HSP's gapped (non-prelim): 5
length of query: 875
length of database: 11,318,596
effective HSP length: 108
effective length of query: 767
effective length of database: 8,432,944
effective search space: 6468068048
effective search space used: 6468068048
T: 11
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.5 bits)
S2: 65 (29.6 bits)