BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145449.7 + phase: 0 /pseudo
(965 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07010 putative retroelement pol polyprotein 369 e-102
At2g13940 putative retroelement pol polyprotein 367 e-101
At2g07420 putative retroelement pol polyprotein 365 e-101
At1g70010 hypothetical protein 364 e-100
At2g16000 putative retroelement pol polyprotein 362 e-100
At2g23330 putative retroelement pol polyprotein 358 6e-99
At1g57640 352 4e-97
At1g31210 putative reverse transcriptase 342 6e-94
At1g53810 338 1e-92
At4g14460 retrovirus-related like polyprotein 332 6e-91
At4g10690 retrotransposon like protein 324 1e-88
At2g16670 putative retroelement pol polyprotein 321 1e-87
At4g27210 putative protein 310 2e-84
At4g02960 putative polyprotein of LTR transposon 310 3e-84
At1g60020 hypothetical protein 305 1e-82
At2g05960 putative retroelement pol polyprotein 275 9e-74
At4g07810 putative polyprotein 274 2e-73
At2g13930 putative retroelement pol polyprotein 270 3e-72
At4g21360 putative transposable element 257 2e-68
At2g24660 putative retroelement pol polyprotein 238 1e-62
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 369 bits (948), Expect = e-102
Identities = 233/648 (35%), Positives = 334/648 (50%), Gaps = 77/648 (11%)
Query: 8 IGT*SISQGLYYL-HSQSSNICGVSASPD--MIHRRLGHPSFDKLKVLVPQLS----HLK 60
IGT G+YYL + ++ + V + D + H+RLGHPSF L L P S +
Sbjct: 481 IGTGEERDGVYYLTDAATTTVHKVDITTDHALWHQRLGHPSFSVLSSL-PLFSGSSCSVS 539
Query: 61 SLDCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSR 120
S C+ C K R FP S NK S F ++H DVWGP RV S+ G Y++T +D FSR
Sbjct: 540 SRSCDVCFRAKQTREVFPDSSNK-STDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSR 598
Query: 121 CTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQ 180
W LL +S++ F + + QFGK ++I+RSDN E F +S+ GI+HQ
Sbjct: 599 SVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTE--FMCLSSYFKEQGIVHQ 656
Query: 181 SSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNE 240
+SC TPQQNG ERKH H+++ +R LL A P KFWG+A++TA YLINR PSS+ +
Sbjct: 657 TSCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGL 716
Query: 241 IPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSP 300
P LL P Y QLRV+GS C+ H +T +DK R+ C+F+GY QKG++ Y
Sbjct: 717 SPYELLHGCKPDYD-QLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGWKVYDL 775
Query: 301 STRRFYISADVTFFEDT-PFFASPTTTSSTTDVT-----DSQVIPTPLFHP-------IF 347
ST F +S DV F E+ P+ + T T VT D +P +
Sbjct: 776 STNEFIVSRDVVFRENVFPYATNEGDTIYTPPVTCPITYDEDWLPFTTLEDRGSDENYLS 835
Query: 348 EPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPI 407
+PPV + + + + + + P P+ S S T T +S S+T+P
Sbjct: 836 DPPVCVTNVSESDTEHD--------TPQSLPTPVDDPLSPSTSVTPTQTPTNSSSSTSPS 887
Query: 408 SSPVVVPPEPSNDLPIALH----KGKRSTANPHPVYNFLSY---------HRLSPS---- 450
++ V P + PI + +GKR P + +++ Y H LSPS
Sbjct: 888 TN---VSPPQQDTTPIIENTPPRQGKRQVQQPARLKDYILYNASCTPNTPHVLSPSTSQS 944
Query: 451 ------------------------YFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVA 486
+ F++A+++ PK E + + W AM E+ A
Sbjct: 945 SSSIQGNLQYPLTDYISDECFSAGHKVFLAAITANDEPKHFKEDVKVKVWNDAMYKEVDA 1004
Query: 487 LESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFS 546
LE N TW++V GK +G + V+ K DG V+R KARLV G Q+ G+DY +TF+
Sbjct: 1005 LEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVERYKARLVVQGNNQIEGEDYTETFA 1064
Query: 547 PVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
PV KMT+VR + + A + ++Q+D+ NAFLHGDLEEE+YM+ P GF
Sbjct: 1065 PVVKMTTVRTLLRLVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGF 1112
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 367 bits (942), Expect = e-101
Identities = 229/653 (35%), Positives = 336/653 (51%), Gaps = 80/653 (12%)
Query: 1 DFNTGKTIGT*SISQGLYYLHSQSS---NICGVSASPDMIHRRLGHPSFDKLKVLV---P 54
D ++ IG+ G+YYL + + V + + H+RLGHPSF L L
Sbjct: 491 DRSSKTLIGSGEERGGVYYLTDVTPAKIHTANVDSDQALWHQRLGHPSFSVLSSLPLFSK 550
Query: 55 QLSHLKSLDCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTF 114
S + S C+ C K R FP S NK + F ++H DVWGP RV ++ G Y++T
Sbjct: 551 TSSTVTSHSCDVCFRAKQTREVFPESINKTEEC-FSLIHCDVWGPYRVPASCGAVYFLTI 609
Query: 115 IDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMAS 174
+D +SR W LL ++S++ F + QFGK ++++RSDN E F +S+
Sbjct: 610 VDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVKMVRSDNGTE--FMCLSSYFRE 667
Query: 175 LGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPS 234
GIIHQ+SC TPQQNG ERKH H+++ R LL A P KFWG++ILTA YLINR PS
Sbjct: 668 NGIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPS 727
Query: 235 SVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKG 294
S+L P +L P+Y QLRV+GS C+VH +T +DK R+ C+F+GY +KG
Sbjct: 728 SILSGRTPYEVLHGSKPVYS-QLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKG 786
Query: 295 YRCYSPSTRRFYISADVTFFEDT-PFFASPTTTSSTT----------------------D 331
++ Y F +S DV F E+ P+ ++T ++T D
Sbjct: 787 WKVYDIERNEFLVSRDVIFREEVFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSID 846
Query: 332 VTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPIDSSDS- 390
+++ + + + VS P + P+ + P +SP+ S S
Sbjct: 847 SVETERVVCTTDEVVLDTSVSDSEIPNQEFVPD-------------DTPPSSPLSVSPSG 893
Query: 391 APKTVTTDSSDSATAPISSPVVV-------------PPEPSNDL--------PIALHK-- 427
+P T TT P++SP+ V PP ND P ++H
Sbjct: 894 SPNTPTTP----IVVPVASPIPVSPPKQRKSKRATHPPPKLNDYVLYNAMYTPSSIHALP 949
Query: 428 --GKRSTANP----HPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMI 481
+S+ P P+ +++S S S+ A+++A++ PK EA+ + W AM
Sbjct: 950 ADPSQSSTVPGKSLFPLTDYVSDAAFSSSHRAYLAAITDNVEPKHFKEAVQIKVWNDAMF 1009
Query: 482 DEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDY 541
E+ ALE N TW++V PGK +G + VF K DG V+R KARLV G QV G+DY
Sbjct: 1010 TEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQVEGEDY 1069
Query: 542 NDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
+TF+PV +MT+VR + A + ++Q+D+ NAFLHGDLEEE+YM+ P GF
Sbjct: 1070 KETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGF 1122
>At2g07420 putative retroelement pol polyprotein
Length = 1664
Score = 365 bits (938), Expect = e-101
Identities = 231/636 (36%), Positives = 335/636 (52%), Gaps = 57/636 (8%)
Query: 1 DFNTGKTIGT*SISQGLYYLH---------SQSSNICGVSASPDMIHRRLGHPSFDKLKV 51
D T + +G GLY L S S+I G +A+ + H RLGHP LK+
Sbjct: 400 DIETSRVLGQGVTKDGLYVLEDTKPSVPLSSHFSSILG-NANSESWHARLGHPHSRALKL 458
Query: 52 LVPQLSHLKSLDCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYY 111
L+P S K+ +CE+C LGKH ++ FP S K FD++HSDVW S +S +Y+
Sbjct: 459 LLPSTS-FKNDECEACILGKHCKSVFPKSSTIYEKC-FDLIHSDVW-TSPCLSRENHKYF 515
Query: 112 VTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSF 171
VTFID S+ TW LL + ++ AF F + + N + I+ILRSDN EY F
Sbjct: 516 VTFIDEKSKFTWFTLLPSKDRVLEAFTNFQTYVTNHYDAKIKILRSDNRGEYTSHAFKQH 575
Query: 172 MASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINR 231
+ GIIHQ+SCP+TPQQNGVAERK+ HL++ R ++ + + P FW D +++ACYLIN+
Sbjct: 576 LNKHGIIHQTSCPYTPQQNGVAERKNRHLMEVRRVMMFHTNVPKHFWIDGVVSACYLINQ 635
Query: 232 MPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRT 291
P+ +L + P +L P LRV+G CFV R+KL ++ K +F+GYS
Sbjct: 636 TPTKILLDSSPFEVLNKVKPFIN-HLRVFGCVCFVLISGEQRNKLQPKSTKGMFIGYSIN 694
Query: 292 QKGYRCYSPSTRRFYISADVTFFEDTPFFASPTTTSSTTDVTDSQVIPTPLFHPIFE--- 348
QKGY+CY TR+ IS DV F E ++ D+TDS I E
Sbjct: 695 QKGYKCYVLETRKVLISRDVKFLESKSYY-DKKNWEDIQDLTDSPSDRATNLRIILERLG 753
Query: 349 -PPVSTQSSPQLQSNPEF------------------RRYGNIYERRHVEAPETSPIDSSD 389
+ TQ++P+ SNPE + G E +E E+S + D
Sbjct: 754 VSNIQTQTTPRT-SNPETITQPENMEEEEEEEEEEEEKQGKEQELITLEETESSKVQEKD 812
Query: 390 SA---PKTVTTDSSDSATAPISSPVVVPPEPSNDLPIALHKGKRSTAN---------PHP 437
++ T++ + + P + P S L K KR N HP
Sbjct: 813 TSLLNDDNGHTNNQEEDSNSREEPRI--PRRSEHL-----KDKRVYYNNQVYFDNVVEHP 865
Query: 438 VYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVS 497
+ + L + F + IP+T EA++HQ W+ A+ E A+E+NHTW+
Sbjct: 866 IQVVCTLAHLPEEHQVFFGKVDQHWIPQTYEEAITHQVWRDAIAAEKQAMENNHTWDEDE 925
Query: 498 PSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLF 557
GK +V + VF +K DG+++R KARLVA G+TQ YG+DY DTF+PVAK+ +VR+
Sbjct: 926 LPRGKKVVTSKWVFAIKYKSDGEIERYKARLVARGFTQTYGEDYLDTFAPVAKLHTVRVV 985
Query: 558 IAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSG 593
+++T L+Q+D+KNAFL G+LEE++YM+ P G
Sbjct: 986 LSLTTNLEWDLWQMDVKNAFLQGELEEKVYMKPPPG 1021
>At1g70010 hypothetical protein
Length = 1315
Score = 364 bits (934), Expect = e-100
Identities = 220/585 (37%), Positives = 301/585 (50%), Gaps = 69/585 (11%)
Query: 33 SPDMIHRRLGHPSFDKLKVLVPQLSHLKSLD-----CESCQLGKHVRASFPSSPNKRSKS 87
S D+ H+RLGHPS KL+ + LS K + C C + K F S NK S+
Sbjct: 403 SHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSR- 461
Query: 88 PFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQ 147
PFD++H D WGP V + G RY++T +D +SR TW+ LL+++S + TF + ++NQ
Sbjct: 462 PFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQ 521
Query: 148 FGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTL 207
F I+ +RSDNA E F F S GI+ SCP TPQQN V ERKH H+++ R+L
Sbjct: 522 FETTIKGVRSDNAPEL---NFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSL 578
Query: 208 LINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVH 267
+H P +WGD ILTA YLINR+P+ +L+++ P +L P Y ++V+G C+
Sbjct: 579 FFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYD-HIKVFGCLCYAS 637
Query: 268 DLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDT-PFFASPTTT 326
R K S RA C F+GY KGY+ T +S V F E+ PF S
Sbjct: 638 TSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGS---- 693
Query: 327 SSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPID 386
D++ + P +P PP+ QSS + +P D
Sbjct: 694 ----DLSQEEQNFFPDLNP--TPPMQRQSSDHV-----------------------NPSD 724
Query: 387 SSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPIALHKGKRS------------TAN 434
SS S P ++P PEPS + + K K+ ++
Sbjct: 725 SSSSV-----------EILPSANPTNNVPEPS--VQTSHRKAKKPAYLQDYYCHSVVSST 771
Query: 435 PHPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWE 494
PH + FLSY R++ Y F++ L P EA Q W+ AM E LE HTWE
Sbjct: 772 PHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWE 831
Query: 495 LVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSV 554
+ S K +GCR +F +K DG V+R KARLVA GYTQ G DYN+TFSPVAK+ SV
Sbjct: 832 VCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSV 891
Query: 555 RLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGFVAWGG 599
+L + + A + L QLDI NAFL+GDL+EEIYM P G+ + G
Sbjct: 892 KLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQG 936
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 362 bits (930), Expect = e-100
Identities = 224/613 (36%), Positives = 324/613 (52%), Gaps = 60/613 (9%)
Query: 1 DFNTGKTIGT*SISQGLYYLHSQSSNICGVSASPD--MIHRRLGHPSFDKLKVLVPQLSH 58
D G+ +G LY L +I V+A D M HRRLGH S +L + L
Sbjct: 521 DLIKGRMLGQGRRVANLYLLDVGDQSI-SVNAVVDISMWHRRLGHASLQRLDAISDSLGT 579
Query: 59 LKSLD-----CESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVT 113
+ + C C L K + SFP+S NK K FD++H DVWGP V + G +Y++T
Sbjct: 580 TRHKNKGSDFCHVCHLAKQRKLSFPTS-NKVCKEIFDLLHIDVWGPFSVETVEGYKYFLT 638
Query: 114 FIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMA 173
+D SR TW+ LLK +S++ F F +++NQ+ ++ +RSDNA E F SF A
Sbjct: 639 IVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPEL---KFTSFYA 695
Query: 174 SLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMP 233
GI+ SCP TP+QN V ERKH H+++ R L+ + P WGD +LTA +LINR P
Sbjct: 696 EKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTP 755
Query: 234 SSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQK 293
S +L N+ P +L P+Y QLR +G C+ R K R+ C+FLGY K
Sbjct: 756 SQLLMNKTPYEILTGTAPVYE-QLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYK 814
Query: 294 GYRCYSPSTRRFYISADVTFFEDT-PFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVS 352
GY+ + +IS +V F E+ P +P + SS LF P+ PVS
Sbjct: 815 GYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESS-----------LKLFTPMV--PVS 861
Query: 353 TQSSPQLQSNPEFRRYGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVV 412
+ G I + H +P + P SD P+ S V
Sbjct: 862 S---------------GIISDTTH--SPSSLPSQISDLPPQI------------SSQRVR 892
Query: 413 VPPEPSNDLPIALHKGKRSTANPHPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALS 472
PP ND H + + +P+ + +SY ++SPS+ +++ ++ + IP EA
Sbjct: 893 KPPAHLND----YHCNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTNYAEAQD 948
Query: 473 HQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIG 532
+EW +A+ E+ A+E +TWE+ + GK VGC+ VF +K DG ++R KARLVA G
Sbjct: 949 TKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKG 1008
Query: 533 YTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPS 592
YTQ G DY DTFSPVAKMT+++L + ++A K+ L QLD+ NAFL+G+LEEEI+M+ P
Sbjct: 1009 YTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPE 1068
Query: 593 GFVAWGGVVWYAN 605
G+ G+V +N
Sbjct: 1069 GYAERKGIVLPSN 1081
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 358 bits (920), Expect = 6e-99
Identities = 230/661 (34%), Positives = 333/661 (49%), Gaps = 85/661 (12%)
Query: 8 IGT*SISQGLYY--------LHSQSSNICGVSASPDMIHRRLGHPSFDKLKVLVPQLSHL 59
IG +G+YY +H SS+ + S D+ HRRLGHPS L L
Sbjct: 468 IGAGEEREGVYYFTGVLAPRVHKASSDF---AISGDLWHRRLGHPSTSVLLSLPECNRSS 524
Query: 60 KSLD----CESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFI 115
+ D C++C K R FP S NK + F ++H DVWGP R ST G Y++T +
Sbjct: 525 QGFDKIDSCDTCFRSKQTREVFPISNNKTMEC-FSLIHGDVWGPYRTPSTTGAVYFLTLV 583
Query: 116 DGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASL 175
D +SR W L+ ++++ FC+ + QFGK ++ R+DN E F + +
Sbjct: 584 DDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQVKAFRTDNGTE--FMCLTPYFQTH 641
Query: 176 GIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSS 235
GI+HQ+SC TPQQNG ERKH H+++ R L + P KFWG++ILTA +LINR PS+
Sbjct: 642 GILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGNLPVKFWGESILTATHLINRTPSA 701
Query: 236 VLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGY 295
VL + P LLF + P Y + LR +G C+ H +DK ++R+ KCVF+GY +K +
Sbjct: 702 VLKGKTPYELLFGERPSYDM-LRSFGCLCYAHIRPRNKDKFTSRSRKCVFIGYPHGKKAW 760
Query: 296 RCYSPSTRRFYISADVTFFED-----------------TP------FFASPTTTSSTTDV 332
R Y T + + S DV F ED TP +F +T +T+V
Sbjct: 761 RVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPPTPPMVNDDWFLPISTQVDSTNV 820
Query: 333 TDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIY----ERRHVEAPETSPIDSS 388
S I +PP S SP +NP G+I R ++ TS + +S
Sbjct: 821 DSSSSSSPAQSGSIDQPPRSIDQSPSTSTNPVPEEIGSIVPSSSPSRSIDR-STSDLSAS 879
Query: 389 D----------SAPK-------------------------TVTTDSSDSATAPISSPVVV 413
D S P T TT +A+ I SP V
Sbjct: 880 DTTELLSTGESSTPSSPGLPELLGKGCREKKKSVLLKDFVTNTTSKKKTASHNIHSPSQV 939
Query: 414 PPEPSNDLPIALHKGKRSTANPHPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSH 473
P + LP +L S +P+ +FL+ S ++ AF++A+ + PK +A+
Sbjct: 940 LP---SGLPTSLSADSVSGKTLYPLSDFLTNSGYSANHIAFMAAILDSNEPKHFKDAILI 996
Query: 474 QEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGY 533
+EW +AM E+ ALE+NHTW++ GK + + V+ +K DG ++R KARLV +G
Sbjct: 997 KEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGN 1056
Query: 534 TQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSG 593
Q G D+ +TF+PVAK+T+VR +A+ A K + Q+D+ NAFLHGDLEEE+YM P G
Sbjct: 1057 HQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPG 1116
Query: 594 F 594
F
Sbjct: 1117 F 1117
>At1g57640
Length = 1444
Score = 352 bits (904), Expect = 4e-97
Identities = 203/590 (34%), Positives = 322/590 (54%), Gaps = 34/590 (5%)
Query: 30 VSASPDMIHRRLGHPSFDKLKVLVPQ--LSHLKSL---DCESCQLGKHVRASFPSSPNKR 84
V A D+ HRRLGH S DK+ L+P+ LS K + C++C K R +FP S N R
Sbjct: 485 VKAPFDLWHRRLGHAS-DKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDN-R 542
Query: 85 SKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEI 144
S F ++H DVWGP R S G RY++T +D +SR W+ L+ D+S+ F + +
Sbjct: 543 SMDSFQLIHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALV 602
Query: 145 KNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTT 204
+ QF I+I+RSDN E F + GI H++SC TP QNG ERKH H+++
Sbjct: 603 ERQFDTEIKIVRSDNGTE--FLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIA 660
Query: 205 RTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTC 264
R L ++ P +FWG+ IL+A YLINR PS +L + P +L+ P Y LRV+GS C
Sbjct: 661 RALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYS-HLRVFGSLC 719
Query: 265 FVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPT 324
+ H+ DK +AR+ +CVF+GY QKG+R + ++F++S DV F++T F S
Sbjct: 720 YAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDV-IFQETEFPYSKM 778
Query: 325 TTSSTTDVTDSQVIPTPLFHPIFEP--------------------PVSTQSSPQLQSNPE 364
+ + + + P P P+ + + + S E
Sbjct: 779 SCNEEDERVLVDCVGPPFIEEAIGPRTIIGRNIGEATVGPNVATGPIIPEINQESSSPSE 838
Query: 365 FRRYGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPIA 424
F ++ +T+ + S + P + S T P+ + +N + +
Sbjct: 839 FVSLSSLDPFLASSTVQTADLPLSSTTPAPIQLRRSSRQT---QKPMKLKNFVTNTVSVE 895
Query: 425 LHKGKRSTANPHPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEM 484
+ S+++ +P+ ++ HR + S+ AF++A+++ P T +EA+ + W++AM E+
Sbjct: 896 SISPEASSSSLYPIEKYVDCHRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEI 955
Query: 485 VALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDT 544
+L N T+ +V+ PGK +G + V+ +K DG ++R KARLV +G Q G DY++T
Sbjct: 956 ESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDET 1015
Query: 545 FSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
F+PVAKM++VRLF+ + A + + Q+D+ NAFLHGDL+EE+YM+ P GF
Sbjct: 1016 FAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGF 1065
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 342 bits (877), Expect = 6e-94
Identities = 214/614 (34%), Positives = 322/614 (51%), Gaps = 57/614 (9%)
Query: 1 DFNTGKTIGT*SISQGLYYLHSQ------SSNICGVSASPDMIHRRLGHPSFDKLKVL-- 52
D T K + T GLY L +Q S+ C +A+ ++ H RLGH + L+ L
Sbjct: 416 DLQTQKVVTTGPRRNGLYVLENQEFVALYSNRQC--AATEEVWHHRLGHANSKALQHLQN 473
Query: 53 --VPQLSHLKSLD-CESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*R 109
Q++ ++ CE CQ+GK R F S + R P D +H D+WGPS V+S G +
Sbjct: 474 SKAIQINKSRTSPVCEPCQMGKSSRLPFLIS-DSRVLHPLDRIHCDLWGPSPVVSNQGLK 532
Query: 110 YYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFN 169
YY F+D +SR +W L ++S+ F++F ++NQ I++ +SD E+
Sbjct: 533 YYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLK 592
Query: 170 SFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLI 229
+ ++ GI H+ SCP+TPQQNG+AERKH HLV+ ++L ++H P KFW ++ TA Y+I
Sbjct: 593 THLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYII 652
Query: 230 NRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYS 289
NR+PSSVL N P LF + P Y LRV+GS C+ ++K R+++CVFLGY+
Sbjct: 653 NRLPSSVLKNLSPYEALFGEKPDYS-SLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYN 711
Query: 290 RTQKGYRCYSPSTRRFYISADVTFFE-DTPFFASPTTTSSTTDVTDSQVIP---TPLFHP 345
KGYRC+ P T + YIS +V F E + PF ++P TPL
Sbjct: 712 SQYKGYRCFYPPTGKVYISRNVIFNESELPF-----------KEKYQSLVPQYSTPLLQA 760
Query: 346 IFEPPVSTQSSP----QLQSNPEFRRYGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSD 401
+S S P QL S P N Y V T P +S++ + SD
Sbjct: 761 WQHNKISEISVPAAPVQLFSKPIDL---NTYAGSQVTEQLTDPEPTSNN-------EGSD 810
Query: 402 SATAPISSPVVVPPEPSNDLPIALHKGKRSTANPHPVYNFLSYHRLSPSYFAFVSALSSV 461
P++ + E + + K P+ Y A +++ +
Sbjct: 811 EEVNPVAEEIAANQEQVINSHAMTTRSKAGIQKPNTRY-------------ALITSRMNT 857
Query: 462 SIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQV 521
+ PKT+ A+ H W +A+ +E+ + HTW LV P+ +I+ + VF K+ DG +
Sbjct: 858 AEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSI 917
Query: 522 DRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGD 581
D+LKARLVA G+ Q G DY +TFSPV + ++RL + ++ K P+ QLD+ NAFLHG+
Sbjct: 918 DKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGE 977
Query: 582 LEEEIYMEQPSGFV 595
L+E ++M QPSGF+
Sbjct: 978 LQEPVFMYQPSGFI 991
>At1g53810
Length = 1522
Score = 338 bits (866), Expect = 1e-92
Identities = 223/624 (35%), Positives = 307/624 (48%), Gaps = 65/624 (10%)
Query: 17 LYYLHSQSSNICGVSASPDMIHRRLGHPSFDKLKVLVPQ-----LSHLKSLDCESCQLGK 71
L L+S N SAS ++ HRRLGH + + L L ++ + CE+C LGK
Sbjct: 444 LQVLYSTRQN----SASSEVWHRRLGHANAEVLHQLASSKSIIIINKVVKTVCEACHLGK 499
Query: 72 HVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRS 131
R F S S+ P + +H D+WGPS S G RYYV FID +SR TW LK +S
Sbjct: 500 STRLPFMLSTFNASR-PLERIHCDLWGPSPTSSVQGFRYYVVFIDHYSRFTWFYPLKLKS 558
Query: 132 QLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNG 191
F F+ F ++NQ G I+I + D E+ + F + GI SCP+TPQQNG
Sbjct: 559 DFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHLQDHGIQQNMSCPYTPQQNG 618
Query: 192 VAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLD-NEIPQSLLFPKD 250
+AERKH H+V+ +++ + P K+W ++ TA ++IN +P+S LD NE P L+ K
Sbjct: 619 MAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFVINLLPTSSLDNNESPYQKLYGKA 678
Query: 251 PLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISAD 310
P Y LRV+G C+ K R++KCVFLGY+ KGYRC P T R YIS
Sbjct: 679 PEYSA-LRVFGCACYPTLRDYASTKFDPRSLKCVFLGYNEKYKGYRCLYPPTGRIYISRH 737
Query: 311 VTFFEDTPFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGN 370
V F E+T F S + D T FH + P QS + S P+
Sbjct: 738 VVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHV-TPTQPDQSRYPVSSIPQPETTDL 796
Query: 371 IYERRHVEAPETSPIDSSD-------------SAPKTVTTDS------------------ 399
V A P S D S +T DS
Sbjct: 797 SAAPASVAAETAGPNASDDTSQDNETISVVSGSPERTTGLDSASIGDSYHSPTADSSHPS 856
Query: 400 ---SDSATAPISSPVVVPPEPSNDLPIA-----LHKGKRSTANPHPVYNFLSYHRLSPSY 451
S A++P SP+ + P P+ + +GK + P+ Y L+ H++
Sbjct: 857 PARSSPASSPQGSPIQMAPAQQVQAPVTNEHAMVTRGKEGISKPNKRYVLLT-HKV---- 911
Query: 452 FAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VF 511
S+ PKTV EAL H W AM +EM + TW LV SP +++G VF
Sbjct: 912 --------SIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMNVLGSMWVF 963
Query: 512 NVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQL 571
K+ DG +D+LKARLVA G+ Q G DY +T+SPV + +VRL + + + + L Q+
Sbjct: 964 RTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQM 1023
Query: 572 DIKNAFLHGDLEEEIYMEQPSGFV 595
D+KNAFLHGDL E +YM QP+GFV
Sbjct: 1024 DVKNAFLHGDLTETVYMRQPAGFV 1047
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 332 bits (851), Expect = 6e-91
Identities = 197/592 (33%), Positives = 307/592 (51%), Gaps = 48/592 (8%)
Query: 38 HRRLGHPSFDKLKVLVPQLSHLKSLDCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVW 97
H+RLGHPS V++ +L L + S N + +PFD+VH D+W
Sbjct: 603 HQRLGHPS----SVVLQKLKRLAYI-----------------SHNNLASNPFDLVHLDIW 641
Query: 98 GPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRS 157
GP + S G RY++T +D +R TW+ +L+++ + F F + QF I+ +RS
Sbjct: 642 GPFSIESIEGFRYFLTVVDDCTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFNAKIKAIRS 701
Query: 158 DNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKF 217
DNA E F + G++H SC +TPQQN V ERKH H+++ R LL ++ P ++
Sbjct: 702 DNAPEL---GFTEIVKEHGMLHHFSCAYTPQQNSVVERKHQHILNVARALLFQSNIPMQY 758
Query: 218 WGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLS 277
W D + TA +LINR+PS +L+N+ P L+ K P Y + L+ +G CFV R K +
Sbjct: 759 WSDCVTTAVFLINRLPSPLLNNKSPYELILNKQPDYSL-LKNFGCLCFVSTNAHERTKFT 817
Query: 278 ARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPTTTSSTTDVTDSQV 337
RA CVFLGY KGY+ + +S +V F E F + + D+ + +
Sbjct: 818 PRARACVFLGYPSGYKGYKVLDLESHSVTVSRNVVFKEHVFPFKTSELLNKAVDMFPNSI 877
Query: 338 IPTPL-FHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAP---------ETSPIDS 387
+P P H + P+ + S + + + R N P ET IDS
Sbjct: 878 LPLPAPLHFVETMPLIDEDS-LIPTTTDSRTADNHASSSSSALPSIIPPSSNTETQDIDS 936
Query: 388 S----DSAPKTVTTDS--SDSATAPISSPVVVPPE----PSNDLPIALHKGKRSTANPHP 437
+ + +T S S+ + + S +PP P + LP P+P
Sbjct: 937 NAVPITRSKRTTRAPSYLSEYHCSLVPSISTLPPTDSSIPIHPLPEIFTASSPKKTTPYP 996
Query: 438 VYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVS 497
+ +SY + +P +++ A ++ + PKT +A+ ++W + ++E+ A+E N TW + S
Sbjct: 997 ISTVVSYDKYTPLCQSYIFAYNTETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVES 1056
Query: 498 PSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLF 557
P K++VGC+ VF +K DG V+R KARLVA G+TQ G D+ DTFSPVAK+TS ++
Sbjct: 1057 LPPDKNVVGCKWVFTIKYNPDGTVERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMM 1116
Query: 558 IAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGFVAWGGVVWYAN--CR 607
+ + A+ L Q+D+ +AFLHGDL+EEI+M P G+ G + N CR
Sbjct: 1117 LGLAAITGWTLTQMDVSDAFLHGDLDEEIFMSLPQGYTPPAGTILPPNPVCR 1168
>At4g10690 retrotransposon like protein
Length = 1515
Score = 324 bits (831), Expect = 1e-88
Identities = 211/603 (34%), Positives = 310/603 (50%), Gaps = 43/603 (7%)
Query: 31 SASPDMIHRRLGHPSFDKLKVLVPQ----LSHLKSLDCESCQLGKHVRASFPSSPNKRSK 86
S+ ++ H+RLGHP+ + L+ L+ ++ S CE+CQ+GK R F +S S+
Sbjct: 452 SSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGKVCRLPFVASEFVSSR 511
Query: 87 SPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKN 146
P + +H D+WGP+ V S G +YYV FID +SR TW LK +S F F+ F ++N
Sbjct: 512 -PLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVEN 570
Query: 147 QFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRT 206
Q+ I + + D E+ F + +AS GI SCPHTPQQNG+AER+H +L + +
Sbjct: 571 QYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLS 630
Query: 207 LLINAHAPFKFWGDAILTACYLINRMPSSVL-DNEIPQSLLFPKDPLYRVQLRVYGSTCF 265
L+ ++ P K W +A T+ +L N +PSS L DN+ P +L P+Y LRV+GS C+
Sbjct: 631 LMFHSKVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVY-TALRVFGSACY 689
Query: 266 VHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFE---------- 315
+ ++K +++ CVFLGY+ KGYRC P T + YI V F E
Sbjct: 690 PYLRPYAKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYS 749
Query: 316 ------DTPFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYG 369
+P F + S+T + S+ P+ I P + SS P
Sbjct: 750 QFQTISGSPLFTAWQKGFSSTAL--SRETPSTNVEDIIFPSATVSSSVPTGCAPNIAETA 807
Query: 370 NIYE----RRHVEAPETSPIDSSD--SAPKTVTTD----SSDSATAPISS----PVVVPP 415
+ H SPI S+ + P+ T+D S+DS TA S+ + V
Sbjct: 808 TAPDVDVAAAHDMVVPPSPITSTSLPTQPEESTSDQNHYSTDSETAISSAMTPQSINVSL 867
Query: 416 EPSNDLPIALHKGKRSTANP---HPVYNFLSYHRLSPS-YFAFVSALSSVSIPKTVHEAL 471
+D P +TA P HP+ P+ +A S S+ PK+V EAL
Sbjct: 868 FEDSDFPPLQSVISSTTAAPETSHPMITRAKSGITKPNPKYALFSVKSNYPEPKSVKEAL 927
Query: 472 SHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAI 531
+ W AM +EM + TW+LV P ++GC+ VF K+ DG +DRLKARLVA
Sbjct: 928 KDEGWTNAMGEEMGTMHETDTWDLVPPEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVAR 987
Query: 532 GYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQP 591
GY Q G DY +T+SPV + +VR + + + + L QLD+KNAFLH +L+E ++M QP
Sbjct: 988 GYEQEEGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDELKETVFMTQP 1047
Query: 592 SGF 594
GF
Sbjct: 1048 PGF 1050
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 321 bits (823), Expect = 1e-87
Identities = 202/583 (34%), Positives = 295/583 (49%), Gaps = 37/583 (6%)
Query: 35 DMIHRRLGHPSFDKLKVLVPQLS------HLKSLDCESCQLGKHVRASFPSSPNKRSKSP 88
++ H R+GHP+ ++ L+P+ S HL C+ C K R SFP S NK +
Sbjct: 390 ELWHSRMGHPAA-RVVSLIPESSVSVSSTHLNKA-CDVCHRAKQTRNSFPLSINKTLRI- 446
Query: 89 FDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQF 148
F++++ D+WGP R S G RY++T ID +SR W+ LL D+S+ F + QF
Sbjct: 447 FELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQF 506
Query: 149 GKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLL 208
I+ +RSDN E F F G+IH+ SC TP++N ERKH HL++ R L
Sbjct: 507 NVKIKTVRSDNGTE--FLCLTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALR 564
Query: 209 INAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHD 268
A+ P +FWG+ +LTA YLINR PSSVL++ P L K P + LRV+GS C+ H+
Sbjct: 565 FQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFD-HLRVFGSLCYAHN 623
Query: 269 LTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFE-DTPFFASPTTTS 327
G DK + R+ +CVF+GY QKG+R + F++S DV F E + PF S
Sbjct: 624 RNRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSELEFPFRISH---E 680
Query: 328 STTDVTDSQVIPTPLFHPIFE------------PPVSTQS--SPQLQSNPEFRRYGNIYE 373
+ + + P+ + E PP+ S SP S+ + +
Sbjct: 681 QNVIEEEEEALWAPIVDGLIEEEVHLGQNAGPTPPICVSSPISPSATSSRSEHSTSSPLD 740
Query: 374 RRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPIALHKGKRSTA 433
V P TS +S + T S P ++ V PP +P + R+ A
Sbjct: 741 TEVVPTPATSTTSASSPSSPTNLQFLPLSRAKPTTAQAVAPPA----VPPPRRQSTRNKA 796
Query: 434 NPHPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTW 493
P + +F+ + + ++++ + S ID A E NHTW
Sbjct: 797 PPVTLKDFVVNTTVCQESPSKLNSILYQLQKRDDTRRFSASHTTYVAID---AQEENHTW 853
Query: 494 ELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTS 553
+ PGK +G + V+ VK DG V+R KARLVA+G Q G+DY +TF+PVAKM +
Sbjct: 854 TIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAPVAKMAT 913
Query: 554 VRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGFVA 596
VRLF+ + + + Q+D+ NAFLHGDL EE+YM+ P GF A
Sbjct: 914 VRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEA 956
>At4g27210 putative protein
Length = 1318
Score = 310 bits (795), Expect = 2e-84
Identities = 206/591 (34%), Positives = 287/591 (47%), Gaps = 77/591 (13%)
Query: 31 SASPDMIHRRLGHPSFDKLKVLVPQLSHLKSLDCESCQLGKHVRASFPSSPNKRSKSPFD 90
SAS ++ HRRLGHP PQ+ P +
Sbjct: 306 SASDEVWHRRLGHPH--------PQILQ-----------------------------PLE 328
Query: 91 IVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGK 150
VH D+WGP+ + S G RYY FID +SR +WI LK +S + FL F ++NQ +
Sbjct: 329 RVHCDLWGPTTITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFLAFHKLVENQLSQ 388
Query: 151 GIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLIN 210
I + + D E+ F + S GI Q SCPHTPQQNG+AERKH HLV+ ++L
Sbjct: 389 KISVFQCDGGGEFVSHKFLQHLQSHGIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLFQ 448
Query: 211 AHAPFKFWGDAILTACYLINRMPSSVLDNEI-PQSLLFPKDPLYRVQLRVYGSTCFVHDL 269
+H P KFW +A TA +LIN +P+S L I P L+ K P Y LR +GS CF
Sbjct: 449 SHVPHKFWVEAFFTANFLINLLPTSALKESISPYEKLYDKKPDY-TSLRSFGSACFPTLR 507
Query: 270 TPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFED------------- 316
+K + ++KCVFLGY+ KGYRC P T R YIS V F E
Sbjct: 508 DYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPFSHTYKHLHP 567
Query: 317 ---TPFFA-------SPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFR 366
TP A SP ++ST+ + S PLF PP+ + +P L P
Sbjct: 568 QPRTPLLAAWLRSSDSPAPSTSTSPSSRS-----PLFTSADFPPLPQRKTPLL---PTLV 619
Query: 367 RYGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPPEPS-NDLPIAL 425
++ ++ ++ DS +T DS+ + SS E + + +
Sbjct: 620 PISSVSHASNITTQQSPDFDSE----RTTDFDSASIGDSSHSSQAGSDSEETIQQASVNV 675
Query: 426 HKGKRSTANPHPVYNFLSYHRLSPS-YFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEM 484
H+ ST N HP+ P+ + F+S S PKTV AL H W AM +E+
Sbjct: 676 HQTHAST-NVHPMVTRAKVGISKPNPRYVFLSHKVSYPEPKTVTAALKHPGWTGAMTEEI 734
Query: 485 VALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDT 544
TW LV ++G + VF K+ DG +++LKAR+VA G+ Q G DY +T
Sbjct: 735 GNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLET 794
Query: 545 FSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGFV 595
+SPV + +VRL + + + Q+D+KNAFLHGDL+E +YM QP+GFV
Sbjct: 795 YSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAGFV 845
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 310 bits (794), Expect = 3e-84
Identities = 230/674 (34%), Positives = 320/674 (47%), Gaps = 85/674 (12%)
Query: 1 DFNTGKTIGT*SISQGLYYLHSQSSNICGVSASP------DMIHRRLGHPSFDKLKVLV- 53
D NTG + LY SS + ASP H RLGHPS L ++
Sbjct: 404 DLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVIS 463
Query: 54 ----PQL--SHLKSLDCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG 107
P L SH K L C C + K + F +S SK P + ++SDVW S ++S
Sbjct: 464 NHSLPVLNPSH-KLLSCSDCFINKSHKVPFSNSTITSSK-PLEYIYSDVWS-SPILSIDN 520
Query: 108 *RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAP 167
RYYV F+D F+R TW+ LK +SQ+ F+ F S ++N+F I L SDN E F
Sbjct: 521 YRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGE--FVV 578
Query: 168 FNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACY 227
+++ GI H +S PHTP+ NG++ERKH H+V+ TLL +A P +W A A Y
Sbjct: 579 LRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVY 638
Query: 228 LINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLG 287
LINR+P+ +L + P LF + P Y +L+V+G C+ R KL ++ +C F+G
Sbjct: 639 LINRLPTPLLQLQSPFQKLFGQPPNYE-KLKVFGCACYPWLRPYNRHKLEDKSKQCAFMG 697
Query: 288 YSRTQKGYRCYSPSTRRFYISADVTF------FEDTPFFAS----------PTTTSSTTD 331
YS TQ Y C T R Y S V F F T F S P S TT
Sbjct: 698 YSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTL 757
Query: 332 VTDSQVIPTP----------------------------------LFHPIF-EPPVSTQSS 356
T V+P P + P EP + +
Sbjct: 758 PTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNG 817
Query: 357 PQLQSNPEFRRYGN----IYERRHVEAP------ETSPIDSSD-SAPKTVTTDSSDSA-T 404
PQ + P + N I + +P + SP+ S S+P T +S S
Sbjct: 818 PQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPN 877
Query: 405 APISSPVVVPP-EPSNDLPIALHKGKRSTANPHPVYNFLSYHRLSPSY-FAFVSALSSVS 462
+P SS PP P P + ++ N H + P+ +++ ++L++ S
Sbjct: 878 SPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANS 937
Query: 463 IPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGK-SIVGCR*VFNVKVGLDGQV 521
P+T +A+ W+QAM E+ A NHTW+LV P P +IVGCR +F K DG +
Sbjct: 938 EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 997
Query: 522 DRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGD 581
+R KARLVA GY Q G DY +TFSPV K TS+R+ + + + P+ QLD+ NAFL G
Sbjct: 998 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1057
Query: 582 LEEEIYMEQPSGFV 595
L +E+YM QP GFV
Sbjct: 1058 LTDEVYMSQPPGFV 1071
>At1g60020 hypothetical protein
Length = 1194
Score = 305 bits (780), Expect = 1e-82
Identities = 216/617 (35%), Positives = 300/617 (48%), Gaps = 70/617 (11%)
Query: 38 HRRLGHPSFDKLKVLVPQLSH------LKSLDCESCQLGKHVRASFPSSPNKRSKSPFDI 91
H RLGHPS LKV+V Q S K +C C L K + F ++ S P +
Sbjct: 425 HSRLGHPSLSTLKVVVSQFSLPVSNSLQKQFNCSDCLLNKTHKLPFHTN-TITSTQPLEY 483
Query: 92 VHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKG 151
++ D+W S ++S +YY+ +D ++R +W +K +S + F+TF + + N+F +
Sbjct: 484 LYIDLW-TSPIVSIDNFKYYLVIVDHYTRYSWFYPIKQKSHVKDVFMTFKALVANKFQRK 542
Query: 152 IRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINA 211
I L SDN E F SF++S GI H ++ PHTP+ NG++ERKH H+V+T TLL A
Sbjct: 543 IIHLYSDNGGE--FIALRSFLSSNGITHLTTPPHTPEHNGISERKHRHIVETGLTLLGQA 600
Query: 212 HAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTP 271
P +W A A YLINRM S V+ P LF + P Y ++LRV+G CF
Sbjct: 601 SMPKSYWSYAFTIAIYLINRMSSDVIGGISPYKRLFGQAPNY-LKLRVFGCLCFPWLRPY 659
Query: 272 GRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPT------- 324
KL R CVFLGYS+TQ Y C + +T R Y S V F E+T F PT
Sbjct: 660 TTHKLDDRPAPCVFLGYSQTQSAYLCLNRTTGRVYTSRHVQFVENTYPFTKPTLDPFTNL 719
Query: 325 ----TTSSTTDVTDSQVI-----------------------PTPLFHPIFEPPVSTQSSP 357
S TT V + P+PL P PV T SSP
Sbjct: 720 EESNNHSITTTVPSPPFVQLPSVPPPTRDPHQPPPSQPAPSPSPLSPPSMSSPVMT-SSP 778
Query: 358 QLQSNPEFRRYGNIYERRHVE----------APETSPIDS-SDSAPKTVTTDSSDSATAP 406
Q SN + Y HV+ P TSP S S S P + + S+ P
Sbjct: 779 QFSSNRDSTTLHGDYS--HVDYGLSSPSNPPGPITSPTTSKSPSEPTSSPSHSNQPNKTP 836
Query: 407 ISSPVVVPPEPSNDLPIALHKGKRSTANPHPVYNFLSYH-RLSPSYFAFVSALSSVSIPK 465
+SP S+ PI + S + P P N S R + + L+ + PK
Sbjct: 837 PNSP---SSSSSSPTPIPSPSPQSSNSPPPPPQNQHSMRTRAKNNITKPIKKLTLAATPK 893
Query: 466 -------TVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLD 518
TV EAL W+ AM +E A N T++LV P P ++ VG R +F +K D
Sbjct: 894 GKSKIPTTVAEALRDPNWRNAMSEEFNAGLRNSTYDLVPPKPHQNFVGTRWIFTIKYNPD 953
Query: 519 GQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFL 578
G ++R KAR +A G+ Q +G DY++TFSPV K T+V+ + + + + QLDI NAFL
Sbjct: 954 GSINRYKARFLAKGFHQQHGLDYSNTFSPVIKSTTVQTVLDIAVSRSWDIRQLDINNAFL 1013
Query: 579 HGDLEEEIYMEQPSGFV 595
G L E++Y+ QP GF+
Sbjct: 1014 QGRLTEDVYVAQPPGFI 1030
>At2g05960 putative retroelement pol polyprotein
Length = 1200
Score = 275 bits (703), Expect = 9e-74
Identities = 180/569 (31%), Positives = 274/569 (47%), Gaps = 48/569 (8%)
Query: 38 HRRLGHPSFDKLKVLV--------PQLSHLKSLDCESCQLGKHVRASFPSSPNKRSKSPF 89
H RLGH + + +K +V P K + C SC LGK R FP + R+
Sbjct: 391 HARLGHINLETIKAMVTKEFVIGIPSAPKEKEI-CASCMLGKQARQVFPKATTYRASQIL 449
Query: 90 DIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFG 149
+++H D+ GP + RY + ID SR W LLK++S+ FG F TF + ++ + G
Sbjct: 450 ELIHGDLCGPISPPTAAKRRYILVLIDDHSRFMWSFLLKEKSEAFGKFKTFKATVEQETG 509
Query: 150 KGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLI 209
+ I+ LR+D E+ F +F GII + P+TPQQNGV ER++ L+ TR+++
Sbjct: 510 EKIKTLRTDRGGEFLSQEFQTFCEEEGIIRHLTAPYTPQQNGVVERRNRTLLGMTRSIMK 569
Query: 210 NAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDL 269
+ P WG+AI A YLINR+ + L N+ P L K P LRV+G +
Sbjct: 570 HMSVPNYLWGEAIRHATYLINRVGTRALINQTPYEALKKKKPNVE-HLRVFGCVSYAKVE 628
Query: 270 TPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPTTTSST 329
P KL R+ V+LG K Y P+TR+ +S DV F E+ + +
Sbjct: 629 FPHLRKLDERSRILVYLGTETGSKAYTLLDPTTRKIIVSRDVVFDENKSW------KWAN 682
Query: 330 TDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPIDSSD 389
+++ + Q EP + T + + +N E ETS +
Sbjct: 683 SELIEIQK----------EPGMFTLAQTEFHNNEEVEN-------------ETSEEIEEN 719
Query: 390 SAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPIALHKGKRSTANPHPVYNFLSYHRLSP 449
A + D+ D + P V P S+D+P+ G++ H L+ + L
Sbjct: 720 EAEDSTNKDAEDG----LDEPSVPEPNHSDDVPVFTRSGRQVIKPAH-----LNDYVLLA 770
Query: 450 SYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR* 509
L P EA ++EW+ A +E+ ++ N TW LVS G +G +
Sbjct: 771 EIEGERLLLLINDEPWDFKEANKYREWRDACDEEIKSIIKNRTWSLVSLPVGIKPIGLKW 830
Query: 510 VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLF 569
VF +K DG + + KARLVA GY Q + D+++ F+PVA++ +VR IA+ A +
Sbjct: 831 VFKIKRNSDGNITKHKARLVAKGYVQKHVVDFDEVFAPVARIETVRFIIALAASNGWEVH 890
Query: 570 QLDIKNAFLHGDLEEEIYMEQPSGFVAWG 598
LD+K AFLHG+L+E +Y+ QP GFV G
Sbjct: 891 HLDVKTAFLHGELKENVYVTQPEGFVTKG 919
>At4g07810 putative polyprotein
Length = 1366
Score = 274 bits (701), Expect = 2e-73
Identities = 192/580 (33%), Positives = 274/580 (47%), Gaps = 91/580 (15%)
Query: 40 RLGHPSFDKLKVLVPQL---SHLKSLDCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDV 96
RLGHPS +++ L L L C+ C L K SF S+ NK + PF ++H D
Sbjct: 506 RLGHPSMSRVQALSSNLHIPQKLSEFHCKICHLSKQKCLSFVSN-NKIYEEPFPLIHID- 563
Query: 97 WGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILR 156
D + +F FL ++ QFG ++ +R
Sbjct: 564 -------------------------------SDVTTIFPEFLKL---VQTQFGCTVKSIR 589
Query: 157 SDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFK 216
SDNA E F +A+ GI H SC +TPQQN V ER H HL++ R+L ++ P
Sbjct: 590 SDNAPEL---QFKDLLATFGIFHYHSCAYTPQQNYVVERNHQHLLNVARSLYFQSNIPLA 646
Query: 217 FWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKL 276
+W + + TA +LINR P+ L+++ P +L+ K P Y LRV+ C+ R K
Sbjct: 647 YWPECVSTAAFLINRTPTPNLEHKSPYEVLYKKLPDYN-SLRVFCCLCYASTHQHERHKF 705
Query: 277 SARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPTTTSSTTDVTDSQ 336
+ RA CVF+GY KGY+ + ++ +V F E F +T + + DS
Sbjct: 706 TERATSCVFIGYESGFKGYKILDLESNTVSVTRNVVFHETIFPFIDKHSTQNVSFFDDSV 765
Query: 337 VIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPIDSSDSAPKTVT 396
+ P+S + Q F+ IY+ +V E P+ P TV
Sbjct: 766 L------------PISEK-----QKENRFQ----IYDYFNVLNLEVCPVIE----PTTVP 800
Query: 397 TDSSDSATAPISSPVVVPPEPSNDLPIALHKGKRSTA----------------------N 434
+ + AP+S+ V + ND+ L K + A
Sbjct: 801 AHTHTRSLAPLST-TVTNDQFGNDMDNTLMPRKETRAPSYLSQYHCSNVLKEPSSSLHGT 859
Query: 435 PHPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWE 494
H + + LSY +LS Y F A+ + P T EA Q+W AM E+ AL S T E
Sbjct: 860 AHSLSSHLSYDKLSNEYRLFCFAIIAEKEPTTFKEAALLQKWLDAMNVELDALVSTSTRE 919
Query: 495 LVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSV 554
+ S GK +GC+ VF +K DG ++R KARLVA GYTQ G DY DTFSP+AK+TSV
Sbjct: 920 ICSLHDGKRAIGCKWVFKIKYKSDGTIERYKARLVANGYTQQEGVDYIDTFSPIAKLTSV 979
Query: 555 RLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
RL +A+ A+ + Q+D+ NAFLHGD EEEIYM+ P G+
Sbjct: 980 RLILALAAIHNWSISQMDVTNAFLHGDFEEEIYMQLPQGY 1019
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 270 bits (690), Expect = 3e-72
Identities = 190/572 (33%), Positives = 288/572 (50%), Gaps = 54/572 (9%)
Query: 38 HRRLGHPSFDKLKVLVPQ----LSHLKSLD-CESCQLGKHVRASFPSSPNKRSKSPFDIV 92
H RLGH S +++LV + +K L+ CE C GK R SF + + +K V
Sbjct: 418 HSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFAPAQHV-TKEKLAYV 476
Query: 93 HSDVWGPSRVMSTLG*-RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKG 151
HSD+WG ++LG +Y+++F+D +SR WI L+ + + F F+ + ++NQ +
Sbjct: 477 HSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRK 536
Query: 152 IRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINA 211
++ LR+DN EY F F GI+ +C +TPQQNG+AER + ++D R++L +
Sbjct: 537 VKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRS 596
Query: 212 HAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTP 271
KFW +A TA YLINR PS+ ++ ++P+ P LR +G ++H
Sbjct: 597 GMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLS-SLRKFGCLAYIH---A 652
Query: 272 GRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFF---ASPTTTSS 328
+ KL+ R+ K +F Y KGY+ + ++ IS +V F E F T S
Sbjct: 653 DQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDKKCVISRNVIFREQVMFKDLKGDSQNTIS 712
Query: 329 TTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPET-SPIDS 387
+D+ D +V P + +TQ + SNP EA + +P+ +
Sbjct: 713 ESDLEDLRVNPDMNDQEFTDQGGATQDN----SNPS-------------EATTSHNPVLN 755
Query: 388 SDSAPKTVTTDSSDS-ATAPISSPVVVPPEPSNDLPIALHKGKRSTANPHPVYNFLSYHR 446
S + + ++ DS A +S+ +V R T +P YN
Sbjct: 756 SPTHSQDEESEEEDSDAVEDLSTYQLVRDRV------------RRTIKANPKYN-----E 798
Query: 447 LSPSYFAFVSALSSVSIPKTVHEALSHQEWKQ---AMIDEMVALESNHTWELVSPSPGKS 503
+ FA+ S PK+ EAL +W++ AM +EMV++ NHTW+LV+
Sbjct: 799 SNMVGFAYYSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVK 858
Query: 504 IVGCR*VFNVKVGLDG-QVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTA 562
++GCR VF K G+ G + R ARLVA G+TQ G DYN+ FSPV K S+R ++M
Sbjct: 859 LIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVV 918
Query: 563 MKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
L Q+D+K AFLHG LEEEIYM QP GF
Sbjct: 919 HYNMELQQMDVKTAFLHGFLEEEIYMAQPEGF 950
>At4g21360 putative transposable element
Length = 1308
Score = 257 bits (657), Expect = 2e-68
Identities = 181/611 (29%), Positives = 298/611 (48%), Gaps = 75/611 (12%)
Query: 2 FNTGKTIGT*SISQGLYYLH-----SQSSNICGVSASPDMIHRRLGHPSFDKLKVLVP-- 54
+ KT ++ GLY L +++ N+ G + ++ H RLGH S + +K+L
Sbjct: 401 YKENKTALCGNLVNGLYVLDGHTVVNENCNVEGSNEKTELWHCRLGHMSLNNMKILAEKG 460
Query: 55 --QLSHLKSLD-CESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYY 111
+ +K L CE+C +GK + SF + + +H+D+WG +Y+
Sbjct: 461 LLEKKDIKELSFCENCVMGKSKKLSFNVGKHITDEV-LGYIHADLWGK---------QYF 510
Query: 112 VTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSF 171
++ ID SR W++ LK + + F F + ++NQ K ++ILR+DN E+ F+ F
Sbjct: 511 LSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNLKFDEF 570
Query: 172 MASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINR 231
GI +C +TPQQNGVA+R + L++ R LL + FW +A TA YL+NR
Sbjct: 571 CKQNGIERHRTCTYTPQQNGVAKRMNRTLMEKVRCLLNESGLEEVFWAEAAATAAYLVNR 630
Query: 232 MPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRT 291
P+S +D+ +P+ L K P Y+ LR +G +VH L G KL RA+K VFLGY +
Sbjct: 631 SPASAVDHNVPEELWLDKKPGYK-HLRRFGCIAYVH-LDQG--KLKPRALKGVFLGYPQG 686
Query: 292 QKGYRCYSPSTRRFYISADVTFFEDTPFF-ASPTTTSSTTDVTDSQVIPTPLFHPIFEPP 350
KGY+ + + IS ++ F E+ + ++ S D++D
Sbjct: 687 TKGYKVWLLDEEKCVISRNIVFNENQVYKDIRESSEQSVKDISD---------------- 730
Query: 351 VSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSP 410
L+ EF+ + + H E +T + + SDS + P
Sbjct: 731 --------LEGYNEFQ----VSVKEHGECSKTGGVTIEE------IDQESDSENSVTQEP 772
Query: 411 VVVPPEPSNDLPIALHKGKRSTANPHPVYNFLSYHRLSPSYFAFVSALSSV---SIPKTV 467
++ + SN A + +R+ P+P Y ++FA ++ P+
Sbjct: 773 LIASIDLSN-YQSARDRERRA---PNPPQKLADY-----THFALALVMAEEIESEEPQCY 823
Query: 468 HEALSHQ---EWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDG-QVDR 523
H+A + +W M +E+ +L N TW++V + ++ CR +F +K G+ G + R
Sbjct: 824 HDAKKDKHWIKWNGGMKEEIDSLLKNGTWDIVEWPKEQKVISCRWLFKLKPGIPGVEAQR 883
Query: 524 LKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLE 583
KARLVA G+TQ G DY + F+PV K S+R+ ++ L Q+D+K FLHG+L+
Sbjct: 884 YKARLVARGFTQQKGIDYEEVFAPVVKHISIRILMSAVVKDDMELEQMDVKTTFLHGELD 943
Query: 584 EEIYMEQPSGF 594
+ +YMEQP GF
Sbjct: 944 QVLYMEQPEGF 954
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 238 bits (607), Expect = 1e-62
Identities = 150/422 (35%), Positives = 213/422 (49%), Gaps = 20/422 (4%)
Query: 8 IGT*SISQGLYYLHSQSS---NICGVSASPDMIHRRLGHPSFD---KLKVLVPQLSHLKS 61
IG+ G+YYL ++ + VS+ + H+RLGHPSF L VL + S
Sbjct: 59 IGSGEERDGVYYLTDVATAKIHTAKVSSDQALWHQRLGHPSFSVLSSLPVLTSSSLSVGS 118
Query: 62 LDCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRC 121
C+ C K R FP S NK S F ++H DVWGP RV S+ G Y++T +D FSR
Sbjct: 119 RSCDVCFRAKQTREVFPVSTNK-SIECFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRA 177
Query: 122 TWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQS 181
W LL +S++ F + QFGK +++LRSDN E F S+ GI+HQ+
Sbjct: 178 VWTYLLLAKSEVRTVLTNFLVYTEKQFGKSVKVLRSDNGTE--FMCLASYFREHGIVHQT 235
Query: 182 SCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEI 241
SC TPQQNG ERKH H+++ R +L A P +FWG+A+LTA YLINR P+S+ +
Sbjct: 236 SCVGTPQQNGRVERKHRHILNVARAILFQASLPIQFWGEAVLTAAYLINRTPTSLHNGLS 295
Query: 242 PQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPS 301
P +L P Y LRV+GS C+VH + +DK R+ CVF+GY QKG++ +
Sbjct: 296 PYEILHNSKPNYE-HLRVFGSACYVHRASRDKDKFGERSRLCVFIGYPFAQKGWKVFDME 354
Query: 302 TRRFYISADVTFFEDT-PFFASPTTTSSTTDV-----TDSQVIPTPL---FHPIFEPPVS 352
+ F +S DV F ED P+ A+ T S + D V T L + +
Sbjct: 355 KKEFLVSRDVVFREDVFPYAATNTDHVSASPAPLLVDEDWMVSTTTLDRGSSAVLSANKN 414
Query: 353 TQSSPQLQSNP-EFRRYGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPV 411
T P + P +F ++ + PE+ + P +VT + + PV
Sbjct: 415 TDPKPNSVTKPDDFAEPESVTKPDDFAEPESVTKPDDFAEPVSVTKPDDFAEPDSVIKPV 474
Query: 412 VV 413
VV
Sbjct: 475 VV 476
Score = 150 bits (380), Expect = 3e-36
Identities = 101/330 (30%), Positives = 154/330 (46%), Gaps = 55/330 (16%)
Query: 320 FASPTTTSSTTDVTD--SQVIPTPLFHP--IFEPPVSTQSSPQLQSNPEFR--RYGNIYE 373
FA P + + D + S P P + +P V T+S+ LQ++ F ++
Sbjct: 440 FAEPESVTKPDDFAEPVSVTKPDDFAEPDSVIKPVVVTESNSALQTDSVFEPDSDSDVAP 499
Query: 374 RRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPI---------- 423
+ S +DSSDS+ S D+ SP +V N+ P+
Sbjct: 500 ASIASDLQNSRVDSSDSSTPDKNLASGDTLAQIDDSPDIVSTPNRNNQPLFVVDSPFVEA 559
Query: 424 -------------------ALHKGKRSTANPH--------------------PVYNFLSY 444
L+ S NPH P+ +++S
Sbjct: 560 TSPRQRKRQIRQSVRLQDYVLYNATVSPINPHALPDSSSQSSSMVQGTSSLYPLSDYVSD 619
Query: 445 HRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSI 504
S + AF++A+++ PK EA+ + W AM E+ ALE N TW++V PGK
Sbjct: 620 DCFSAGHKAFLAAITANDEPKHFKEAVRIKVWNDAMFKEVDALEINKTWDIVDLPPGKVA 679
Query: 505 VGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMK 564
+G + V+ K DG ++R KARLV G QV G+DYN+TF+PV KMT+VR + + A
Sbjct: 680 IGSQWVYKTKYNADGSIERYKARLVVQGNKQVEGEDYNETFAPVVKMTTVRTLLRLVAAN 739
Query: 565 R*PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
+ ++Q+D+ NAFLHGDL+EE+YM+ P GF
Sbjct: 740 QWEVYQMDVNNAFLHGDLDEEVYMKLPPGF 769
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.339 0.146 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,812,045
Number of Sequences: 26719
Number of extensions: 877532
Number of successful extensions: 4100
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 3463
Number of HSP's gapped (non-prelim): 342
length of query: 965
length of database: 11,318,596
effective HSP length: 109
effective length of query: 856
effective length of database: 8,406,225
effective search space: 7195728600
effective search space used: 7195728600
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC145449.7