BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145329.2 + phase: 0 /pseudo
         (246 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g21310 putative retroelement pol polyprotein                       132  1e-31
At2g21460 putative retroelement pol polyprotein                       132  2e-31
At2g07550 putative retroelement pol polyprotein                       132  2e-31
At3g45520 copia-like polyprotein                                      128  3e-30
At5g35820 copia-like retrotransposable element                        125  2e-29
At4g10460 putative retrotransposon                                    123  1e-28
At2g19840 copia-like retroelement pol polyprotein                     121  3e-28
At1g37110                                                             102  1e-22
At4g21360 putative transposable element                               100  7e-22
At2g13930 putative retroelement pol polyprotein                       100  7e-22
At1g47360 polyprotein, putative                                        92  3e-19
At2g15700 copia-like retroelement pol polyprotein                      87  6e-18
At4g04380 putative polyprotein                                         87  1e-17
At4g04280 putative transposon protein                                  76  1e-14
At3g55300 putative protein                                             68  4e-12
At4g04600 putative polyprotein                                         58  5e-09
At1g42380 hypothetical protein                                         56  2e-08
At3g60170 putative protein                                             49  2e-06
At3g29782 hypothetical protein                                         49  2e-06
At4g12200 putative protein                                             49  3e-06

>At2g21310 putative retroelement pol polyprotein
          Length = 838

 Score =  132 bits (333), Expect = 1e-31
 Identities = 90/247 (36%), Positives = 142/247 (57%), Gaps = 28/247 (11%)

Query: 7   DIEKFTGDNDFGLWKVKMEA------VLIQQKCEKALKGEGLLPVTMSQVEKTDMVDKV- 59
           ++EK  G+ D+ LWK K+ A      +L   + ++A++ E     T S + KT+  DKV 
Sbjct: 7   EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTE--DKVL 64

Query: 60  -------RSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFRM 112
                  RS ++L LG+ VLR+V KE TAA +   L+ L+M KSL +R +LK +LY ++M
Sbjct: 65  KEKRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKM 124

Query: 113 VESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTVI 172
            +S  I E + +F K++ DLEN++V + DED+AI+L  ++PK F+  KDT+ YGK  T+ 
Sbjct: 125 SDSMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLA 183

Query: 173 LEEVQAALRTK--------KLTKSKDLRVHEHGEGLSVLRGNDGGRGNRRKSGNKSRSE- 223
           L+E+  A+R+K        K+ K+    +     G S  R     R N+ +S +KSR + 
Sbjct: 184 LDEITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSER-NKSQSRSKSREKK 242

Query: 224 -CFNCHK 229
            C+ C K
Sbjct: 243 VCWVCGK 249


>At2g21460 putative retroelement pol polyprotein
          Length = 1333

 Score =  132 bits (331), Expect = 2e-31
 Identities = 92/248 (37%), Positives = 142/248 (57%), Gaps = 27/248 (10%)

Query: 7   DIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGLLPVTMSQVEKTDMVDK-------- 58
           ++EKF G  D+ +WK K+ A L       ALK E  L   +++++ T+  +K        
Sbjct: 7   EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66

Query: 59  -------VRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFR 111
                   RSAIVL + D+VLR++ KE +AA++   L+ LYM+K+L +R + K +LY F+
Sbjct: 67  LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126

Query: 112 MVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYG-KEGT 170
           M E+ +I   + EF +I+ DLEN  V + DED+AILL  ++PK F+  +DT+ YG    T
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVT 186

Query: 171 VILEEVQAALRTKKLTKSKDLR-VHEHGEGLSV-----LRGNDGGRG---NRRKSGNKSR 221
           + L+EV AA+ +K+L    + + +    EGL V      RG    RG   N +KS +KSR
Sbjct: 187 LSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSR 246

Query: 222 SE--CFNC 227
           S+  C+ C
Sbjct: 247 SKKGCWIC 254


>At2g07550 putative retroelement pol polyprotein
          Length = 1356

 Score =  132 bits (331), Expect = 2e-31
 Identities = 89/247 (36%), Positives = 143/247 (57%), Gaps = 28/247 (11%)

Query: 7   DIEKFTGDNDFGLWKVKMEAVLIQQKCEKALK-----GEGLLPVTMS------QVEKTDM 55
           ++EKF G  D+ +WK K+ A +       ALK     GE    +  S      ++EK + 
Sbjct: 7   EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66

Query: 56  VD----KVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFR 111
           ++    K RSAIVL + D+VLR++ KE TAA++   L+ LYM+K+L +R + K +LY F+
Sbjct: 67  LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126

Query: 112 MVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTV 171
           M E+ ++   + EF +I+ DLEN+ V + DED+AILL  A+PK+F+  KDT+ Y    ++
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSI 186

Query: 172 I-LEEVQAALRTKKL---TKSKDLRVHEHGEGLSVL-------RGNDGGRGNRRKSGNKS 220
           + L+EV AA+ +K+L   +  K ++V    EGL V        +G   G+G  +K  +K 
Sbjct: 187 LTLDEVAAAIYSKELELGSVKKSIKV--QAEGLYVKDKNENKGKGEQKGKGKGKKGKSKK 244

Query: 221 RSECFNC 227
           +  C+ C
Sbjct: 245 KPGCWTC 251


>At3g45520 copia-like polyprotein
          Length = 1363

 Score =  128 bits (321), Expect = 3e-30
 Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 28/251 (11%)

Query: 3   GSKWDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGLLPVTMSQVEKTDMVDK---- 58
           G++ ++EKF G  D+ +WK K+ A +        L+            EK+D  +K    
Sbjct: 3   GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62

Query: 59  -----------VRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QL 107
                       RS IVL + D+VLR++ KE +AA++   L+ LYM+K+L +R +LK +L
Sbjct: 63  KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKL 122

Query: 108 YLFRMVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGK 167
           Y F+M E+ +I   + EF  I+ DLEN+ V + DED+AILL  ++PK F+  KDT+ Y  
Sbjct: 123 YSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSS 182

Query: 168 EGTVI-LEEVQAALRTKKLT----------KSKDLRVHEHGEGLSVLRGNDGGRGNRRKS 216
             TV+ L+EV AA+ +++L           +++ L V +  E        D G+G R KS
Sbjct: 183 GKTVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKS 242

Query: 217 GNKSRSECFNC 227
             KS+  C+ C
Sbjct: 243 --KSKRGCWIC 251


>At5g35820 copia-like retrotransposable element
          Length = 1342

 Score =  125 bits (315), Expect = 2e-29
 Identities = 83/251 (33%), Positives = 132/251 (52%), Gaps = 29/251 (11%)

Query: 7   DIEKFTGDNDFGLWKVKM-----------------EAVLIQQKCEKALKGEGLLPVTMSQ 49
           ++EKF GD D+ LWK K+                 EAV+     E +  G        S+
Sbjct: 7   EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66

Query: 50  VEKTDMVDK---VRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*Q 106
           +E   + +K    RS I+L LG+ VLR+V K+ TAA +   L+ L+M KSL +R +LK +
Sbjct: 67  LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126

Query: 107 LYLFRMVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYG 166
           LY ++M E+  + E + +F K++ DLEN++V + DED+AI+L  ++P+ F+  K+T+ Y 
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186

Query: 167 KEGTVILEEVQAALRTK--------KLTKSKDLRVHEHGEGLSVLRGNDGGRGNRRKSGN 218
           K  T+ LEE+ +A+R+K        KL K+    +     G S  RG    +   R    
Sbjct: 187 KT-TLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKNKSRSKSK 245

Query: 219 KSRSECFNCHK 229
            +   C+ C K
Sbjct: 246 GAGKTCWICGK 256


>At4g10460 putative retrotransposon
          Length = 1230

 Score =  123 bits (308), Expect = 1e-28
 Identities = 80/232 (34%), Positives = 128/232 (54%), Gaps = 16/232 (6%)

Query: 7   DIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGLLPVTMSQVEK-------------T 53
           ++EKF G  D+ LWK K+ A +       AL+    +   +   E+              
Sbjct: 7   EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66

Query: 54  DMVDKVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFRMV 113
           +   K RS IVL + D+VLR+  KE TA S+   L+ LYM+K+L +R +LK +LY ++M 
Sbjct: 67  EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126

Query: 114 ESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTVI- 172
           E+ ++   + EF +++ DLEN  V + DED+AILL  ++PK F+  KDT+ YG   T + 
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLS 186

Query: 173 LEEVQAALRTKKLTKSKDLR-VHEHGEGLSVL-RGNDGGRGNRRKSGNKSRS 222
           ++EV AA+ +K+L    + + +    EGL V  +    G   +++ GNK RS
Sbjct: 187 VDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRS 238


>At2g19840 copia-like retroelement pol polyprotein
          Length = 1137

 Score =  121 bits (304), Expect = 3e-28
 Identities = 67/185 (36%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 52  KTDMVDKVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFR 111
           + D  +K    I + +GDKVLR +    TAA  WA L+ LY+ KSL +R +L+ ++Y +R
Sbjct: 37  RIDQDEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYR 96

Query: 112 MVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTV 171
           M +SK + E + EF K++ DL N+++Q+ DE +AIL+  A+P S++  K+T+ YG+EG  
Sbjct: 97  MQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREGIK 156

Query: 172 ILEEVQAALRTKKLTKSKDLRVHEH-------GEGLSVLRGNDGGRGNRRKSGNKSRSEC 224
           + + + AA       KSK+L + +        GEGL V RG    RG+      + +  C
Sbjct: 157 LDDVISAA-------KSKELELRDSSGGSRPVGEGLYV-RGKSQARGSDGPKSTEGKKVC 208

Query: 225 FNCHK 229
           + C K
Sbjct: 209 WICGK 213


>At1g37110 
          Length = 1356

 Score =  102 bits (255), Expect = 1e-22
 Identities = 72/260 (27%), Positives = 139/260 (52%), Gaps = 32/260 (12%)

Query: 1   TMGSKWDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGL---LPVTMSQVE------ 51
           T  ++ +I+ F GD DF LWK++++A L     +  L    L   +P+T S+ +      
Sbjct: 3   TTTTRVEIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDG 62

Query: 52  ------------KTDMVDKVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAH 99
                       K +  ++ ++ I+  + D VL +V    T A +WA L   YM  SL +
Sbjct: 63  ESSGTKEVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPN 122

Query: 100 RQFLK*QLYLFRMVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESF 159
           R + + +LY F+MV +  I + + EF +I+ +L ++E+Q+++E +AIL+  ++P S    
Sbjct: 123 RIYTQLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQL 182

Query: 160 KDTMLYGKEGTVILEEVQAALRT--KKLTKSKDLR------VHEHGEGLSVLRGND-GGR 210
           K T+ YG + T+ +++V ++ ++  ++L ++ DL       ++    G  ++R N  GG+
Sbjct: 183 KHTLKYGNK-TLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQ 241

Query: 211 G-NRRKSGNKSRSECFNCHK 229
           G  R +S +K++  C+ C K
Sbjct: 242 GKGRSRSNSKTKVPCWYCKK 261


>At4g21360 putative transposable element
          Length = 1308

 Score =  100 bits (249), Expect = 7e-22
 Identities = 72/261 (27%), Positives = 135/261 (51%), Gaps = 34/261 (13%)

Query: 2   MGSKWDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGLLPVTM----------SQVE 51
           M +K +I+ F GD DF LWK+++EA L     + AL    L    +          S+ +
Sbjct: 3   MSTKVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESEDD 62

Query: 52  KTD--------------MVDKVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSL 97
           +TD                D+ ++ I+  + D VL +V    TAA +WA L  L+M  SL
Sbjct: 63  ETDSKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETSL 122

Query: 98  AHRQFLK*QLYLFRMVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFE 157
            +R + + +LY F+MV++ +I +   EF +I+ +L ++++Q+ +E +AIL+  ++P S+ 
Sbjct: 123 PNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSYI 182

Query: 158 SFKDTMLYGKEGTVILEEVQAALRT--KKLTKSKD-------LRVHEHGEGLSVLRGNDG 208
             K T+ YG + T+ +++V ++ ++  ++L++ K+         ++    G    +   G
Sbjct: 183 QLKHTLKYGNK-TLSVQDVVSSAKSLERELSEQKETIRAPASTALYTAERGRPQTKNTQG 241

Query: 209 GRGNRRKSGNKSRSECFNCHK 229
               R +S +KSR  C+ C K
Sbjct: 242 QGKGRGRSNSKSRLTCWFCKK 262


>At2g13930 putative retroelement pol polyprotein
          Length = 1335

 Score =  100 bits (249), Expect = 7e-22
 Identities = 63/191 (32%), Positives = 103/191 (52%), Gaps = 13/191 (6%)

Query: 49  QVEKTDMVDKVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLY 108
           +V + +  DK ++ I L + DKVLR++    TAA  W  L+ L+M +SL HR + +   Y
Sbjct: 39  EVARLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFY 98

Query: 109 LFRMVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKE 168
            F+M E+K I E + +F KI+ DL ++++ + DE +AILL  ++P  ++   +TM Y   
Sbjct: 99  TFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNS 158

Query: 169 GTVI-LEEVQAALRTKKLTKSKDLRVHEHGEGLSVLRGNDGGRGNRR--KSGNKSRSE-- 223
              + L++V  A R K+   S++ R    G      RG   G+ N +  K  N+SRS+  
Sbjct: 159 REKLRLDDVMVAARDKERELSQNNRPVVEGH---FARGRPDGKNNNQGNKGKNRSRSKSA 215

Query: 224 -----CFNCHK 229
                C+ C K
Sbjct: 216 DGKRVCWICGK 226


>At1g47360 polyprotein, putative
          Length = 1182

 Score = 91.7 bits (226), Expect = 3e-19
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 27/230 (11%)

Query: 8   IEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGLLPVTMSQVEKTDMVDKVRSAIVLCL 67
           I  F    DF LWK ++ A L     +  + G+ + P+T  + E  +        I LC 
Sbjct: 6   IAVFDESGDFSLWKTRIMAHLSVIGLKDVVIGKTITPLTAEEEEDPE------KKIELC- 58

Query: 68  GDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFRMVESKAIIEQLMEFNK 127
                       TA   W  L+ L+M +SL HR + +   Y F+M E+K I E + +F K
Sbjct: 59  -----------QTAQEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLK 107

Query: 128 ILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTVI-LEEVQAALRTKKLT 186
           I+ DL ++++++ DE +AILL  ++P  ++   +TM Y      + L++V    R K+  
Sbjct: 108 IVADLNHLQIEVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRLDDVMVGARDKERE 167

Query: 187 KSKDLRVHEHG-------EGLSVLRGNDGGRGNRRKSGNKSRSECFNCHK 229
            S++ R    G       EG +  +GN G   +R KS +  R  C+ C K
Sbjct: 168 LSQNNRPVAEGHYARGRPEGKNNNQGNKGKNRSRSKSADGKR-VCWICGK 216


>At2g15700 copia-like retroelement pol polyprotein
          Length = 1166

 Score = 87.4 bits (215), Expect = 6e-18
 Identities = 71/253 (28%), Positives = 128/253 (50%), Gaps = 38/253 (15%)

Query: 7   DIEKFTGDNDFGLWKVKMEA--------------------VLIQQKCEKALK----GEGL 42
           ++++F G  DF LWKV+M A                     +I+++   A +    G+  
Sbjct: 8   EVDRFDGTGDFSLWKVRMLAHYGVLGLKGILNDEQLLRDPPVIEEEAAVAGRDYHVGDFE 67

Query: 43  LPVTMSQVEKTDMVDKVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQF 102
           LP  +  + K +  +K +  IVL +G++VLR++    TAA++W+ L+ LYM  SL +R +
Sbjct: 68  LPSNVDLI-KFEKSEKAKDLIVLNVGNQVLRKIKNCETAAAMWSTLKRLYMETSLPNRIY 126

Query: 103 LK*QLYLFRMVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDT 162
           L+ + Y ++M +S++I   + +F K++ DL NI V + +E +AILL  ++    E+ +  
Sbjct: 127 LQLKFYTYKMTDSRSIDGNVDDFLKLVTDLNNIGVDVTEEVQAILLLSSLYDRKENSQKV 186

Query: 163 MLYGKEGTVILEEV--QAALRTKKLTKSKD-LRVH-EHGEGLSVLR---------GNDGG 209
                EG  + +E   +  L+ +K    +D LR   +  +G S ++           D G
Sbjct: 187 ESSQSEGLYVEQEADQRRGLKKEKANHGEDVLRAKADQNQGQSTIKTTRVVSSVVKKDIG 246

Query: 210 RGNRRKSGNKSRS 222
           RG+  KS +K  S
Sbjct: 247 RGSVLKSLHKPSS 259


>At4g04380 putative polyprotein
          Length = 778

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 52/129 (40%), Positives = 79/129 (60%), Gaps = 14/129 (10%)

Query: 58  KVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFRMVESKA 117
           K RS IVL + D+VL                + LYM+K+L ++ +LK +LY F+M E+ +
Sbjct: 55  KTRSTIVLSVSDRVLEAS-------------DRLYMSKALPNQIYLKQKLYRFKMSENLS 101

Query: 118 IIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTVI-LEEV 176
           +   + EF  I+ DLEN+ V + DED+ ILL  ++PKSF+  KDT+ Y    TV+ L+EV
Sbjct: 102 MEGNIDEFLHIVADLENLNVLVSDEDQTILLLMSLPKSFDQLKDTLQYSSGKTVLTLDEV 161

Query: 177 QAALRTKKL 185
            AA+ +K+L
Sbjct: 162 TAAIYSKEL 170


>At4g04280 putative transposon protein
          Length = 1104

 Score = 76.3 bits (186), Expect = 1e-14
 Identities = 67/260 (25%), Positives = 117/260 (44%), Gaps = 49/260 (18%)

Query: 5   KWDIEKFTGDNDFGLWKVKMEAVL-------------------IQQKCEKALKGEGLLPV 45
           K +I+ F GD DF  WK+++EA L                   + +K EK  + E     
Sbjct: 2   KVEIKTFNGDRDFSFWKIRIEAQLGVLGLKNSLTDFKLTKTVPVAKKEEKESEYEDDASD 61

Query: 46  TMSQVEKTDMV-----DKVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHR 100
                E+ D +     ++ ++ I+  + D VL +V    TAA IWA L  L+M  SL +R
Sbjct: 62  IKQATEEPDPIKFEQSEQAKNFIINHITDTVLLKVQHCKTAAEIWATLNKLFMETSLLNR 121

Query: 101 QFLK*QLYLFRMVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFK 160
            + + +LY F+MV++ +I + + EF +IL D  +  +              +P S+   K
Sbjct: 122 IYTQLKLYSFKMVDTLSIDQNVDEFLRILADCLDQNL--------------LPSSYIQLK 167

Query: 161 DTMLYGKEGTVILEEVQAALR----TKKLTKSKDLRVHEHGEGLSVLRGND--GGRGNRR 214
            T+      T ++   ++  R    T++  K+  + ++    G   +R  D  G   NR 
Sbjct: 168 HTL-----NTDVVSSAKSLERKLSETQESNKNVSMALYTTDRGRPQVRNQDKQGQGKNRG 222

Query: 215 KSGNKSRSECFNCHKMVEVE 234
           +S +K+R  C+ C K   V+
Sbjct: 223 RSNSKTRVTCWFCKKEAHVK 242


>At3g55300 putative protein
          Length = 262

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 17/158 (10%)

Query: 89  ESLYMTKSLAHRQFLK*QLYLFRMVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILL 148
           E  Y TK+LA+  +LK +   F+MVE+K+I E L    K++ DL ++++   DED+A+  
Sbjct: 37  EGNYQTKTLANMIYLKHKFTSFKMVENKSIEENLDTSLKLVADLASLDINTSDEDQALQF 96

Query: 149 FCAIPKSFESFKDTMLYGK-EGTVILEEVQAALRTKKL-TKSKDLRVHEHGEGLSVL--- 203
              +P  ++S  DT+ YG  + T+ L  V ++  +K++  K K L      +  ++L   
Sbjct: 97  MAGLPPQYDSLVDTLKYGSGKDTLTLNAVISSAYSKEIELKEKGLLNVSKPDSEALLGDF 156

Query: 204 RGNDGGRGNRR-----KSGN-------KSRSECFNCHK 229
           +G    +GN+R      SGN        + + CF C K
Sbjct: 157 KGRSNNKGNKRPCTGSSSGNGKFQSRPSNNTSCFICGK 194


>At4g04600 putative polyprotein
          Length = 922

 Score = 57.8 bits (138), Expect = 5e-09
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 26/138 (18%)

Query: 7   DIEKFTGDNDFGLWKVKMEAVL------------IQQKCEKALKGE-------------- 40
           +I+ F GDNDF LWK+++ A L               K E   K E              
Sbjct: 8   EIKAFDGDNDFSLWKMRIMAQLGVLGLKGTLTDFALTKTEPLTKSEEKQVASGDESSDSS 67

Query: 41  GLLPVTMSQVEKTDMVDKVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHR 100
            +L   +    K +  ++  + I+  + D VLR+V    TAA++W  L  LYM  SL +R
Sbjct: 68  AVLTKEVPDPIKIEKSEQAINIIINHISDTVLRKVNHYKTAATLWELLNELYMETSLPNR 127

Query: 101 QFLK*QLYLFRMVESKAI 118
            + + + Y FRM+ SK I
Sbjct: 128 IYAQLKFYSFRMMTSKTI 145


>At1g42380 hypothetical protein
          Length = 143

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 7/125 (5%)

Query: 112 MVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTV 171
           M E+K I E + +F KI+ DL +I++++ DE +AILL  ++P  ++   +TM Y      
Sbjct: 1   MQENKKIDENIDDFLKIVVDLNHIQIEVRDEVQAILLLSSLPSRYDGLVETMKYSNSREK 60

Query: 172 I-LEEVQAALRTKKLTKSKDLRVHEHG---EGLSVLRGNDGGRGNRRKSGNKS---RSEC 224
           + L +V  A R K+   S++ R+   G       V + N+ G   + +S +KS   +  C
Sbjct: 61  LRLNDVMVAARDKEREMSQNNRLIAEGHYARRRPVGKNNNQGNKGKNRSWSKSADGKRVC 120

Query: 225 FNCHK 229
           + C K
Sbjct: 121 WICGK 125


>At3g60170 putative protein
          Length = 1339

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 40/255 (15%)

Query: 8   IEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGE------GLLPVTMSQ---VEKTDMVD- 57
           I +F G  DF  W + ME  L  ++  + ++        G  PV+ +Q   VE+  + D 
Sbjct: 12  IPRFDGYYDF--WSMTMENFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKLKDL 69

Query: 58  KVRSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHR---QFLK*QLYLFRMVE 114
           KV++ +   +  ++L  +  + T+ +IW  ++  Y   +   R   Q L+ +  L  M E
Sbjct: 70  KVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAMKE 129

Query: 115 SKAIIEQLMEFNKILDDLE-NIEVQLEDEDKAILLFCAIPK------SFESFKDTMLYGK 167
            + I   L     +++ ++ N EV  +    + +L    PK      S E   D      
Sbjct: 130 GEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDL----- 184

Query: 168 EGTVILEEVQAALRTKK------LTKSKDLRV-HEH----GEGLSVLRGNDG-GRGNRRK 215
             T+ ++E+  +L   +      + + + L+V HE     G G  V RG+ G GRG  R 
Sbjct: 185 -STLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGRGRGVFRGSRGRGRGRGRS 243

Query: 216 SGNKSRSECFNCHKM 230
             N++  EC+ CH +
Sbjct: 244 GTNRAIVECYKCHNL 258


>At3g29782 hypothetical protein
          Length = 1130

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 23/219 (10%)

Query: 11  FTGDNDFGLWKVKMEAVLIQQKCEKALKGEG-LLPVTMSQVEKTDMVDKVRSAIVLCLG- 68
           F G + F  W+ KM   L+    E+ L  +  ++P   + V     +D        C G 
Sbjct: 71  FDGKSGFKTWQEKMRYYLVSINMERYLPEDPPIVPQGTTYVYTVGGMDTWAQGDYCCKGL 130

Query: 69  --DKVLREV----AKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFRMVESKAIIEQL 122
             +++L ++    +K  ++ ++W  LE+ Y T     ++F   +   F+MV+SK I+EQ+
Sbjct: 131 ILNRLLNDLFDLYSKAKSSKTLWLTLENKYKTDESRMQRFSTAKFLNFKMVDSKPIMEQV 190

Query: 123 MEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEG--------TVILE 174
               +I  ++E   + + +  K   L   +P  +  FK+ + + ++          +++E
Sbjct: 191 EALQRICQEIELEGMSICNVFKTNCLIEKLPPGWSDFKNYLNFKRKAMTFDDLIRRLMIE 250

Query: 175 EVQAALRTKKLTKSKDLRVHEH-------GEGLSVLRGN 206
                       +  D+ V EH       G+G S+ + N
Sbjct: 251 GNNRGAHAGAQNQGHDVNVAEHKAKLKGKGKGFSIPQKN 289


>At4g12200 putative protein
          Length = 200

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 33/101 (32%), Positives = 54/101 (52%), Gaps = 9/101 (8%)

Query: 112 MVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTV 171
           M ESK+++E + EF  ++D+L N +V++ DED+AI L  ++P+  E F         G  
Sbjct: 1   MGESKSVMENVDEFQWLIDELSNAKVEIFDEDQAIYLMISLPEQIEKFDG------RGDY 54

Query: 172 ILEEVQAALRTKKLTKSKDLRVHEHGEGLSVLRGNDGGRGN 212
           IL + +   R + L     L++ E  E  SV  G D G+ +
Sbjct: 55  ILGKTKILARFEILDVIDALKI-EEDENKSV--GTDEGKSH 92


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,180,769
Number of Sequences: 26719
Number of extensions: 204874
Number of successful extensions: 770
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 54
length of query: 246
length of database: 11,318,596
effective HSP length: 97
effective length of query: 149
effective length of database: 8,726,853
effective search space: 1300301097
effective search space used: 1300301097
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)