BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145220.5 + phase: 0 /pseudo
(141 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14010 unknown protein 30 0.32
At4g28300 predicted proline-rich protein 29 0.72
At1g21700 putative transcriptional regulatory protein 29 0.72
At1g43850 SEUSS transcriptional co-regulator 29 0.94
At5g17510 glutamine-rich protein 28 2.1
At4g07360 27 2.7
At1g49760 Putative Poly-A Binding Protein (F14J22.3) 27 2.7
At2g30590 unknown protein 27 4.7
At2g01690 unknown protein 27 4.7
At5g19090 unknown protein 26 6.1
At4g32551 Leunig protein 26 6.1
At4g31200 predicted protein 26 6.1
At3g03460 hypothetical protein 26 6.1
At2g03640 unknown protein 26 6.1
At4g00890 26 8.0
At1g17440 unknown protein 26 8.0
At1g15780 unknown protein 26 8.0
>At3g14010 unknown protein
Length = 595
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/51 (37%), Positives = 25/51 (48%), Gaps = 12/51 (23%)
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQ-----QQQARPTFPLIPMLYAKLLP 48
P+GQPQ P QQ P QQ+Q QQ RP + + P Y + +P
Sbjct: 545 PNGQPQYP-------QQQMIPGQQQQQMIPGQQHPRPVYYMHPPPYPQDMP 588
>At4g28300 predicted proline-rich protein
Length = 496
Score = 29.3 bits (64), Expect = 0.72
Identities = 18/35 (51%), Positives = 21/35 (59%), Gaps = 4/35 (11%)
Query: 2 LPSGQPQVP--VNAVVQ--RMQQQPPAQQRQQQQA 32
LPSG P NA+ + RMQ PP Q+QQQQA
Sbjct: 377 LPSGPPPPSGYANAMYEGGRMQYPPPQPQQQQQQA 411
>At1g21700 putative transcriptional regulatory protein
Length = 807
Score = 29.3 bits (64), Expect = 0.72
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 4 SGQPQVPVNA-VVQRMQQQPPAQQRQQQQARPTFPLIPM 41
S PQV + R QQQ QQ+QQQQA P +P+
Sbjct: 711 SNNPQVQAQMHFMARQQQQQQQQQQQQQQAFSFGPRLPL 749
>At1g43850 SEUSS transcriptional co-regulator
Length = 877
Score = 28.9 bits (63), Expect = 0.94
Identities = 14/30 (46%), Positives = 18/30 (59%)
Query: 2 LPSGQPQVPVNAVVQRMQQQPPAQQRQQQQ 31
LP PQ + + Q+ QQQ QQ+QQQQ
Sbjct: 576 LPGPSPQQASDQLRQQQQQQQQQQQQQQQQ 605
>At5g17510 glutamine-rich protein
Length = 369
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/32 (43%), Positives = 18/32 (55%)
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARP 34
P+ Q Q N Q+M QQ QQ+QQ+ RP
Sbjct: 95 PNFQQQQQQNVSSQQMMQQQQQQQQQQKLMRP 126
>At4g07360
Length = 675
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 2 LPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST 58
+P Q VP QQQPP QQ P P M K + LL+GQ+S+
Sbjct: 174 VPYNQGFVPKQQFQGNYQQQPPPGFAPQQNQGPAAPDAEM---KQMVQQLLQGQSSS 227
>At1g49760 Putative Poly-A Binding Protein (F14J22.3)
Length = 671
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/32 (46%), Positives = 17/32 (52%), Gaps = 2/32 (6%)
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARP 34
P G P N + MQQ QQ+QQQQ RP
Sbjct: 473 PGGSPMP--NFFMPMMQQGQQQQQQQQQQQRP 502
>At2g30590 unknown protein
Length = 380
Score = 26.6 bits (57), Expect = 4.7
Identities = 14/30 (46%), Positives = 18/30 (59%), Gaps = 1/30 (3%)
Query: 3 PSGQPQV-PVNAVVQRMQQQPPAQQRQQQQ 31
PS P + PV Q+ QQQ +Q+QQQQ
Sbjct: 144 PSNYPTLFPVQQQQQQQQQQQQQEQQQQQQ 173
>At2g01690 unknown protein
Length = 743
Score = 26.6 bits (57), Expect = 4.7
Identities = 11/19 (57%), Positives = 14/19 (72%)
Query: 16 QRMQQQPPAQQRQQQQARP 34
++ QQQ QQ+QQQQ RP
Sbjct: 696 EQQQQQQQQQQQQQQQQRP 714
>At5g19090 unknown protein
Length = 587
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 5 GQPQVPVNAVVQRMQQQPPAQQ----RQQQQARPTFPLIPMLYAKLLPTL 50
GQ +P N +Q+ QQQ Q QQ++ PM+YA+ P +
Sbjct: 490 GQDSMPGNPYLQQQQQQQQQQYLAAVMNQQRSMGNERFQPMMYARPPPAV 539
>At4g32551 Leunig protein
Length = 931
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 5/25 (20%)
Query: 16 QRMQQQPPAQQRQQQ-----QARPT 35
Q+ Q QPP+QQ+QQQ Q +PT
Sbjct: 154 QQHQNQPPSQQQQQQSTPQHQQQPT 178
>At4g31200 predicted protein
Length = 650
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 14/61 (22%)
Query: 9 VPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST*SIASQVPFG 68
+P+NA V PP Q + P +PL P L+P ++ K Q I S VP+
Sbjct: 470 IPLNASV------PPPTQPPAGEKPPPYPLFP---PGLIPGMVRKMQ-----IGSGVPYS 515
Query: 69 P 69
P
Sbjct: 516 P 516
>At3g03460 hypothetical protein
Length = 354
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 4 SGQPQVPVNAVVQRMQQQPPAQQRQQQ 30
S Q Q+ ++ +MQQQ QQRQQQ
Sbjct: 4 SKQQQLQQQQLLLQMQQQQQMQQRQQQ 30
>At2g03640 unknown protein
Length = 422
Score = 26.2 bits (56), Expect = 6.1
Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 2 LPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARP--TFPLIPMLYAKLLPTLLLK 53
+P+G +VP VV P A + + Q+ P +F LI A+ TL +K
Sbjct: 182 IPNGHAKVPEEKVVNENSSLPKAAEAKLQEEVPKKSFALIVQSLAQSAGTLQVK 235
>At4g00890
Length = 431
Score = 25.8 bits (55), Expect = 8.0
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPM 41
PL S + N ++Q + PP QQQ + PL P+
Sbjct: 80 PLMSKHVKTHRNLLIQSPPKSPPESTESQQQFLASVPLRPL 120
>At1g17440 unknown protein
Length = 683
Score = 25.8 bits (55), Expect = 8.0
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 8 QVPVNAVVQRMQQQPPAQQRQQQQ 31
Q + + Q++QQQP Q +QQQQ
Sbjct: 448 QQQLQQMQQQLQQQPQQQMQQQQQ 471
>At1g15780 unknown protein
Length = 1335
Score = 25.8 bits (55), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 8 QVPVNAVVQRMQQQPPAQQRQQQQ 31
Q P+ Q+ +QQPPAQQ+ Q
Sbjct: 408 QQPLQQPQQQQKQQPPAQQQLMSQ 431
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.352 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,573,310
Number of Sequences: 26719
Number of extensions: 87810
Number of successful extensions: 895
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 72
length of query: 141
length of database: 11,318,596
effective HSP length: 89
effective length of query: 52
effective length of database: 8,940,605
effective search space: 464911460
effective search space used: 464911460
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC145220.5