BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145220.4 - phase: 0 /pseudo
(1391 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 596 e-170
At2g15410 putative retroelement pol polyprotein 400 e-111
At2g13330 F14O4.9 378 e-104
At3g31530 hypothetical protein 349 7e-96
At2g14400 putative retroelement pol polyprotein 323 4e-88
At2g14380 putative retroelement pol polyprotein 297 3e-80
At1g37200 hypothetical protein 286 8e-77
At4g03800 276 6e-74
At1g37060 Athila retroelment ORF 1, putative 267 3e-71
At2g10780 pseudogene 267 4e-71
At4g10580 putative reverse-transcriptase -like protein 263 4e-70
At2g04670 putative retroelement pol polyprotein 259 6e-69
At2g14650 putative retroelement pol polyprotein 251 3e-66
At2g07660 putative retroelement pol polyprotein 250 3e-66
At3g11970 hypothetical protein 248 1e-65
At1g36590 hypothetical protein 248 1e-65
At1g35370 hypothetical protein 242 1e-63
At2g14040 putative retroelement pol polyprotein 232 1e-60
At2g10690 putative retroelement pol polyprotein 201 2e-51
At2g06890 putative retroelement integrase 201 2e-51
>At1g20390 hypothetical protein
Length = 1791
Score = 596 bits (1536), Expect = e-170
Identities = 322/840 (38%), Positives = 484/840 (57%), Gaps = 44/840 (5%)
Query: 561 ELINIGIEENKREIKIGAALEEGVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPT 620
E++NI + R + +GA + ++ ++I LL+ FAWS EDM G+DP I H +
Sbjct: 712 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 771
Query: 621 KPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 680
P PV+QK R+ P+ A + EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 772 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 831
Query: 681 VDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITP 740
VD+ DLNKA PKD++PLPHID LV+ T+ + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 832 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 891
Query: 741 WGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKM 800
GT+CYKVM FGL NAGATYQR + + D I + VEVY+DDM+VKS E HVE+L+K
Sbjct: 892 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 951
Query: 801 FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGF 860
F+ L Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+PR ++V+
Sbjct: 952 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1011
Query: 861 LGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEG 920
GR+ ++RFIS T C P + LL++ W+ + +EAF+ +K+YL PPILV P G
Sbjct: 1012 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1071
Query: 921 RPLIMYLVVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAK 980
L +Y+ V D ++ VL ++D ++ I+Y SK + ETRY ++EK A+ +A+
Sbjct: 1072 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1129
Query: 981 RLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKNARWQMLLSEYDIVFKTQKAIKGSILAD 1040
+LR Y +HT +++ P++ + +G+ +W + LSEYDI F+ + A+K +LAD
Sbjct: 1130 KLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLAD 1188
Query: 1041 HLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGI 1100
L PL + E + G + +W L DG+ +A G GI
Sbjct: 1189 FLIELPL--------------------QSAERAVSG---NRGEEWSLYVDGSSSARGSGI 1225
Query: 1101 GAVIVSPQGHYIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1160
G +VSP + + R+ F TNN+AEYE I G+ A M+I + + DS L+ Q+
Sbjct: 1226 GIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQL 1285
Query: 1161 KGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV- 1219
GE+E + + Y + + F +L IPR +N ADALA L+ + +D+
Sbjct: 1286 SGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDLR 1341
Query: 1220 PIIKVQRLERPS-----HVFAIENVIDQTGENVVDYKPWYYDIKQFLLSREYPPGASKQD 1274
II V+ +++PS V + + + D W +I+ +L G D
Sbjct: 1342 RIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYL-----SDGTLPSD 1396
Query: 1275 KKTLRRL---ASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTM 1331
K T RRL A+++ L + L K + +L C+ E ++M + H+G G H+ G +
Sbjct: 1397 KWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRAL 1456
Query: 1332 SRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMNG 1391
+ KL + G+YW TM DC KC +CQ +A IH P L +P+PF W +D+ G
Sbjct: 1457 ALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVG 1516
Score = 72.0 bits (175), Expect = 2e-12
Identities = 49/176 (27%), Positives = 83/176 (46%), Gaps = 7/176 (3%)
Query: 141 FGEDELPEVGKCHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYREIPLRRS 200
F + +L + HN L + + ++ VL+DTGSS++++ K L ++ + ++
Sbjct: 555 FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 614
Query: 201 TFLVKAFDGSRKNVLGEIDLPITVGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTST 260
+ + FDG +G I LPI VG V F V+ A Y+ +LG PWIH A+ ST
Sbjct: 615 SKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPST 674
Query: 261 LHQKLKFVKNGKLVTVHG-------EEAYLVSQLSSFSCIEAGSAEGTAFQGLTIE 309
HQ +KF + + T+ +Y S+L + ++ T G+ E
Sbjct: 675 YHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAE 730
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 400 bits (1027), Expect = e-111
Identities = 205/511 (40%), Positives = 312/511 (60%), Gaps = 29/511 (5%)
Query: 524 FEFPVYEAEDEESDIPYEITRLLEQEKKAIQPHQEEIELINIGIEENKREIKIGAALEEG 583
FEF V + I Y + + Q+++ P + + +NI + R + I L
Sbjct: 686 FEFAVVD-----KPIIYNVILVPTQDERP-NPQKGTVVQVNIDESDPSRCVGIRIDLPSE 739
Query: 584 VKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIK 643
++ +++ LR+ FAWS EDMPG+D + H + P P++QK R+ PD +
Sbjct: 740 LQNELVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVN 799
Query: 644 SEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDML 703
EV+K +DAG ++ V YP+W+ N V V KK+GK R+C+DF DLNKA PKD+FPLPHID L
Sbjct: 800 EEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRL 859
Query: 704 VDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRG 763
V+ TA ++ SFMD FSGYNQI M DREKT FIT GT+CYKVMPFGL NAGATY R
Sbjct: 860 VEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPRL 919
Query: 764 MTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSG 823
+ +F D + +EVY+DDM+VKS E+H+ +L + F+ L +Y ++LNP+KCTFGV SG
Sbjct: 920 VNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSG 979
Query: 824 KLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFK 883
+ LG++V+++GIE +P ++ AI ++P+PR ++V+ +GR+ ++RFIS T C P ++
Sbjct: 980 EFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQ 1039
Query: 884 LLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQDE 943
LLR N+ W+++C+ EG L +Y+ V ++ VL ++D
Sbjct: 1040 LLRANKRFEWDEKCE--------------------EGETLYLYIAVSTSAVSGVLVREDR 1079
Query: 944 TGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYI 1003
++H I+Y+SK E RY LEK A+ +A++LR Y ++T +++ P++ I
Sbjct: 1080 --GEQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTN-QPLRTI 1136
Query: 1004 FEKAAVTGKNARWQMLLSEYDIVFKTQKAIK 1034
+ +G+ A+W + LSEYDI +K + K
Sbjct: 1137 LHSPSQSGRLAKWAVELSEYDIAYKNRTCAK 1167
Score = 143 bits (360), Expect = 8e-34
Identities = 97/326 (29%), Positives = 144/326 (43%), Gaps = 61/326 (18%)
Query: 1120 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYAR 1179
F +NN AEYEA I G+ A + +K + Y DS LV +Q G +E + + Y R
Sbjct: 1190 FPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVR 1249
Query: 1180 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVN-------HWNDVPIIKVQ-RLERPS 1231
L F EL IPR +N ADALA L+S + DVP IK+Q + +PS
Sbjct: 1250 ELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPS 1309
Query: 1232 HVFAIENVIDQTGENVVDYKP--------------------------------------- 1252
I+ +Q +V P
Sbjct: 1310 EYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSD 1369
Query: 1253 ------WYYDIKQFLLSREYPPGASKQDKKTLRRLASR---FLLDGDILYKRNYDMVLLR 1303
W +I+ ++ R P +DK RRL +R + L + L + + VLL
Sbjct: 1370 SPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLS 1424
Query: 1304 CVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYA 1363
C+D+ EA+Q+M ++H+G G H+ G ++ K+ + G YW TM DC + +C KCQ +A
Sbjct: 1425 CLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHA 1484
Query: 1364 DKIHVPPHALNVISSPWPFSMWGIDM 1389
IH+P L P+PF W +D+
Sbjct: 1485 PFIHIPSEVLQTAMPPYPFMRWAMDI 1510
>At2g13330 F14O4.9
Length = 889
Score = 378 bits (971), Expect = e-104
Identities = 204/538 (37%), Positives = 301/538 (55%), Gaps = 59/538 (10%)
Query: 672 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPED 731
+K+GK R+C+DFRDLNKA PKD+FPLPHID LV+ T + + SFMD F GYNQI M +
Sbjct: 289 EKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDG 348
Query: 732 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEE 791
+EKT+FIT GT+ YKVMPFGL NAG TYQR + +F D + K +EVY+DDM+VKS E+
Sbjct: 349 QEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEK 408
Query: 792 QHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAP 851
HV L + F+ L K++++LNP KC+F V+S + L ++V+++GIE +P ++ A EMP+P
Sbjct: 409 DHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSP 468
Query: 852 RTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLKP 911
+ ++V+ GR+ ++ FIS C P ++ LRK + WN +C++AF +K YL +P
Sbjct: 469 KMAREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEP 528
Query: 912 PILVPPVEGRPLIMYLVVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKT 971
PIL P +G PL +Y T+ + R +EK
Sbjct: 529 PILAKPEKGEPLYLY--------------------------------TNRDKRCPAMEKL 556
Query: 972 CCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKNARWQMLLSEYDIVFKTQK 1031
+ + ++LR Y +H ++ PI+ I +G+ A+W + L EYDI ++T+
Sbjct: 557 ALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRT 615
Query: 1032 AIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIGEGPDPNSKWGLVFDG 1091
++K +LAD + PL D +G + N KW L DG
Sbjct: 616 SLKAQVLADFVIKLPLADL--------------------------DGTNSNKKWLLHVDG 649
Query: 1092 AVNAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYG 1151
+ N G G+G + SP G I + ++ F +NN +EYEA I GI+ A + I+ + Y
Sbjct: 650 SSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYS 709
Query: 1152 DSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 1209
DS LV +Q GE+E + Y + + L F +L IPR EN AD LA L+S
Sbjct: 710 DSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767
Score = 77.4 bits (189), Expect = 5e-14
Identities = 50/156 (32%), Positives = 78/156 (49%), Gaps = 6/156 (3%)
Query: 137 NNLWFGEDELPEVGKCHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYREIP 196
+ + F E E+ ++ K H+ AL I ++ + LS ++VDTGSS++V+ + + +
Sbjct: 45 DGITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSK 104
Query: 197 LRRSTFLVKAFDGSRKNVLGEIDLPITVGPENFLVTFQVMDINASYSCLLGRPWIHDAGA 256
L+ + F G +G I LP L F V+D A ++ +LGRPW+H A
Sbjct: 105 LQGRKTPLTGFAGDTTFSIGTIQLPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKA 164
Query: 257 VTSTLHQKLKFVKNGKLVTVHGEEAYLVSQLSSFSC 292
V ST HQ +KF + V+G SQ SS C
Sbjct: 165 VPSTYHQCIKFPSYKGIAVVYG------SQRSSRKC 194
Score = 32.0 bits (71), Expect = 2.6
Identities = 26/105 (24%), Positives = 52/105 (48%), Gaps = 12/105 (11%)
Query: 505 CRLNHNKPIEHSNPMPLPNFEFPVYEAEDEESDIPYEITRLLEQEKKAIQPHQEEIELIN 564
C + + I+ ++P+ V EDE +++ + R L+ ++ + + I +
Sbjct: 194 CYMGSYEDIKKADPV--------VLMIEDELAEM--KTVRSLDPSQRGTR--KSLITQVC 241
Query: 565 IGIEENKREIKIGAALEEGVKKKIIQLLREYPDIFAWSYEDMPGL 609
I + KR + IG L+ V++ +I L+E D FAWS ++ G+
Sbjct: 242 IDESDPKRCVGIGHDLDLTVREDLITFLKENKDSFAWSSANLQGI 286
>At3g31530 hypothetical protein
Length = 831
Score = 349 bits (895), Expect = 7e-96
Identities = 217/682 (31%), Positives = 343/682 (49%), Gaps = 98/682 (14%)
Query: 714 SFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIH 773
S+ ++ + + M+PED+EKT+F T G FCY+VMPFGL NAGATY+R + +F I
Sbjct: 83 SYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKIFALQIG 142
Query: 774 KEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQK 833
K +EVY+DDM+VKS E+ H+ +L + F++L Y ++LNP KC FGVRS
Sbjct: 143 KTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRS----------- 191
Query: 834 GIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVW 893
GIE +P ++ A+ M +P+ +++V+ GR+ ++RFIS T C + +LR+N+ W
Sbjct: 192 GIEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKKFEW 251
Query: 894 NDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQDETGKKEHAIYY 953
C+EAF +K YL PPIL PV G P +Y+ V D ++ L ++D +K I+Y
Sbjct: 252 TTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQK--LIFY 309
Query: 954 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKN 1013
+S+ FT E+RY +EK A+ +A++LR Y +H+ ++ M P++ I + +G+
Sbjct: 310 VSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQSGRL 368
Query: 1014 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1073
A+W + LSEYDI ++ + K +LAD + P + + E P
Sbjct: 369 AKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEAR-------------------ENP 409
Query: 1074 LIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEACI 1133
L ++ W L DG+ + G G+G + SP G E TNN+AEYEA +
Sbjct: 410 L-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEYEALV 451
Query: 1134 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHI 1193
G+ A ++I + DS L+ NQ GE+ T + Y + + L F + EL I
Sbjct: 452 AGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRI 511
Query: 1194 PRDENQMADALATLSSMFRVNHWNDVPIIKVQR----LERPSHVFAIENVIDQTGENVVD 1249
PR EN ADALA L+S + +P+ +++ L + HV I+ DQ + +
Sbjct: 512 PRGENTSADALAALASTSDTSLKRVIPVEFIEKPSIELGKEEHVLPIQISADQDDPDDCN 571
Query: 1250 YKPWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHE 1309
W I ++ + P + K + L+ A+RF+L LYK L+ CV+
Sbjct: 572 -SEWMEPIISYISEGKLP--SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVEAEA 628
Query: 1310 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 1369
++M ++H G+ +A IH P
Sbjct: 629 ICKIMKEIHSGS----------------------------------------HAPTIHQP 648
Query: 1370 PHALNVISSPWPFSMWGIDMNG 1391
L+ I+SP+PF W +D+ G
Sbjct: 649 AELLSSIASPYPFMRWSMDIIG 670
Score = 41.6 bits (96), Expect = 0.003
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 215 LGEIDLPITVGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKF 267
LG I LP+ +V F + D Y+ ++G PW++ AV ST H LKF
Sbjct: 3 LGTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKF 55
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 323 bits (828), Expect = 4e-88
Identities = 158/355 (44%), Positives = 238/355 (66%), Gaps = 2/355 (0%)
Query: 632 RRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASP 691
R+ + A + EV K + G + V+YP+W+AN V V KK+GK R+C+DF DLNKA P
Sbjct: 470 RKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACP 529
Query: 692 KDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPF 751
KD+FPLPHID LV++TA ++ SFMD FSGYNQI M+PED+EKT FIT G +CYKVMPF
Sbjct: 530 KDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589
Query: 752 GLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRL 811
GL NAGATY R + +F + + K +EVY+DDM++KS +E HV++L + F L +Y+++L
Sbjct: 590 GLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKL 649
Query: 812 NPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFI 871
NP KCTFGV SG+ LG+IV+++GIE +P+++ A MP+P+ K+V+ GR+ ++RFI
Sbjct: 650 NPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFI 709
Query: 872 SHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFD 931
S T P +++L+ N+ +W+++C+EAF +K YL PP+L P L +Y+ V +
Sbjct: 710 SRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSN 769
Query: 932 ESMGCVLGQQDETGKKEHAIYYLSKKFT-DCETRYTMLEKTCCALAWAAKRLRHY 985
++ VL ++D G+++ Y + +F D E + + +E + AK R +
Sbjct: 770 HAVSGVLIREDR-GEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKF 823
Score = 104 bits (260), Expect = 3e-22
Identities = 72/267 (26%), Positives = 118/267 (43%), Gaps = 34/267 (12%)
Query: 1155 LVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMF--R 1212
+++NQ G++E + + Y + L F K EL IPR +N ADALA L+S
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 1213 VNHWNDVPIIKVQRLERPSHVFAIEN---VIDQTGENVVDYKPWYYDIKQFLLSREYPPG 1269
VN V I + ++ F + G+ V+ P +K+ P
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPP----VKRRKSKEATVPK 905
Query: 1270 ASKQDKKTLRRLASRFL-----------LDGDIL--------------YKRNYDMVLLRC 1304
+ Q+ + + +D DIL Y+R L
Sbjct: 906 PAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLS 965
Query: 1305 VDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYAD 1364
+ E +M +VH+G G+H++G M+ K+ + YYW TM DC ++A++C +CQ++A
Sbjct: 966 IFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAP 1025
Query: 1365 KIHVPPHALNVISSPWPFSMWGIDMNG 1391
IH P + IS+P+PF W +D+ G
Sbjct: 1026 LIHQPSELFSSISAPYPFMRWSMDIIG 1052
Score = 37.4 bits (85), Expect = 0.061
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 138 NLWFGEDELPEVGKCHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYREIPL 197
++ F E E + + H+ AL ++++ + +S +L+DTGSS++++ STL+++ +
Sbjct: 408 SILFDEKETQHLERSHDDALVVTLDVANFEVSRILIDTGSSVDLIFLSTLERMGISRADV 467
Query: 198 RRSTFLVKAFDGSRKNVLGEIDLPITVG 225
R V+ K V E+D + +G
Sbjct: 468 NRRKLGVE----RAKAVNDEVDKLLKIG 491
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 297 bits (760), Expect = 3e-80
Identities = 141/282 (50%), Positives = 197/282 (69%)
Query: 605 DMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWV 664
DM G+DP++ H + P V+QK R+ P+ + + EV K +DAG ++ V+YPEW+
Sbjct: 476 DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535
Query: 665 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQ 724
AN V V KK+ K R+C+DF DLNKA PKD+FPLPHID +V+ T ++ SFMD FSGYNQ
Sbjct: 536 ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595
Query: 725 IKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMI 784
I M +D+EKTSFI GT+CYKVMPFGL N GA YQR + +F + K +EVY+DDM+
Sbjct: 596 IPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDML 655
Query: 785 VKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 844
VKST H+++L FE L KY ++LNP KC FGV SG+ LG+IV+++GIE +P ++RA
Sbjct: 656 VKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRA 715
Query: 845 IREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLR 886
I ++ +PR +K+V+ GR+ ++RFI+ T P ++LLR
Sbjct: 716 ILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757
Score = 80.5 bits (197), Expect = 6e-15
Identities = 56/195 (28%), Positives = 89/195 (44%), Gaps = 27/195 (13%)
Query: 113 EQAYVDHEVTEDRFGDIVGNITACNN---------------LW------------FGEDE 145
+Q + D V R I+G +TAC + LW F ++
Sbjct: 277 DQQHNDAPVPRRRVNMIMGGLTACRDSFRSIKEYIKSGAATLWSSPATKEMTPLTFTSED 336
Query: 146 LPEVGKCHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYREIPLRRSTFLVK 205
L V HN L I ++ ++ +L+DTGSS+NV+ K L ++ + ++ S +
Sbjct: 337 LFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLT 396
Query: 206 AFDGSRKNVLGEIDLPITVGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKL 265
FDG+ G I LPI +G F V+D Y+ +LG PWIHD A+ S+ HQ +
Sbjct: 397 GFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCI 456
Query: 266 KFVKNGKLVTVHGEE 280
K + + T+ G +
Sbjct: 457 KIPTSIGIETIRGNQ 471
>At1g37200 hypothetical protein
Length = 1564
Score = 286 bits (731), Expect = 8e-77
Identities = 135/298 (45%), Positives = 200/298 (66%), Gaps = 4/298 (1%)
Query: 555 PHQEEIELINIGIEENKREIKIGAALEEGVKKKIIQLLREYPDIFAWSYEDMPGLDPKIV 614
P + I + I + K+ + +G L+ +++ I L+E D FAWS ++ G+ ++
Sbjct: 614 PQKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFAWSSANLQGISLEVT 673
Query: 615 EHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKD 674
H + P P++QK R+ P+ A ++ EV + + G + V+YP+W+AN V V K+
Sbjct: 674 SHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKYPDWLANPVVVKNKN 733
Query: 675 GKVRMCVDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREK 734
GK R+C+DF DLNKA PKD+FPLPHID LV TA ++ SFMD FSGYNQI M P+D+EK
Sbjct: 734 GKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQILMRPDDQEK 793
Query: 735 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHV 794
T+FIT CYKVMPFGL N GATYQR + +F D + K +E+Y+DDM+VKS E+ H+
Sbjct: 794 TAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYIDDMLVKSAHEKDHL 849
Query: 795 EYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPR 852
L + F+ L K++++LNP KC+FGV SG+ LG++V+Q+GIE +P ++ A +MP+P+
Sbjct: 850 PQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEANPKQIAAFIDMPSPK 907
Score = 203 bits (516), Expect = 6e-52
Identities = 145/492 (29%), Positives = 218/492 (43%), Gaps = 90/492 (18%)
Query: 942 DETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIK 1001
D G+K IYY+SK D ET Y +EK A+ +A++LR YL +H ++ PI+
Sbjct: 927 DHEGQKP--IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIR 983
Query: 1002 YIFEKAAVTGKNARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEE 1061
I + + A+W + LSEYDI ++T+ + K +LAD + PL D
Sbjct: 984 TILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL----------- 1032
Query: 1062 IMYLKSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFE 1121
+G + N KW L DG+ N G G G + SP G I + R+ F
Sbjct: 1033 ---------------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFN 1077
Query: 1122 CTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRL 1181
+NN +EYEA I GI+ A MRI+ + + DS LV +Q GE+E + Y + + L
Sbjct: 1078 ASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTL 1137
Query: 1182 LTYFTKVELHHIPRDENQMADALATLSSMFR--VNHWNDVPIIKVQRLERPSHVFAI--- 1236
F EL IPR EN DALA L+S V II V+ +E PS +
Sbjct: 1138 TQQFESFELTRIPRGENTSTDALAALASTLDPFVKR-----IIPVEGIEHPSIDLTVKHA 1192
Query: 1237 ----------------------------------ENVIDQTGENVVDYKP-----WYYDI 1257
E +T E + Y+P W I
Sbjct: 1193 GMETSATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPI 1252
Query: 1258 KQFLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDV 1317
++ PP K + + L+ ++R+ + L KR+ + C + + LM +
Sbjct: 1253 IDYIERGITPP--DKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSM 1310
Query: 1318 HDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVIS 1377
H+G G+H +G T+ +L DC H+ +C KCQ +A +H PP ++ IS
Sbjct: 1311 HEGQCGSHYSGRTLRCIMLA----------DCIAHSLRCDKCQRHAPTLHQPPEEMSSIS 1360
Query: 1378 SPWPFSMWGIDM 1389
SP+PF W +D+
Sbjct: 1361 SPYPFMKWSMDV 1372
Score = 41.2 bits (95), Expect = 0.004
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 240 ASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTVHGEEAYLVSQLSSFSC 292
A ++ +LGRPW+H AV ST HQ +KF + ++G SQ SS C
Sbjct: 530 APFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGIAVIYG------SQRSSRRC 576
Score = 31.6 bits (70), Expect = 3.3
Identities = 16/45 (35%), Positives = 28/45 (61%), Gaps = 2/45 (4%)
Query: 139 LWFGEDELPEVGKCHNLALHISVNCKSDMLSNVLVDTGSSLNVMP 183
LW E E ++ K H+ A+ I ++ + LS +++DTGSS++ P
Sbjct: 489 LW--ESETTDLDKPHDDAIVIRIDVGNYKLSRIMIDTGSSVDKAP 531
>At4g03800
Length = 637
Score = 276 bits (706), Expect = 6e-74
Identities = 139/337 (41%), Positives = 213/337 (62%), Gaps = 21/337 (6%)
Query: 606 MPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 665
MP +DP I+ H + P P++QK R+ + A + ++ K + G + V+YP+WVA
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380
Query: 666 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQI 725
V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV++TA ++ +FMD F GYNQI
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440
Query: 726 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 785
M+PED+EKTSFIT + GATYQ + +F++ + K +EV +DD +V
Sbjct: 441 MMNPEDQEKTSFIT---------------DRGATYQWLVNKMFNEHLRKTMEVSIDDTLV 485
Query: 786 KSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 845
KS +E HV++L + FE L +Y+++LN KCTFGV SG+ LG+IV+++GIE +P+++ A
Sbjct: 486 KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 545
Query: 846 REMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 905
+ P+ R K+V+ GR+ S T P +++L+ N +W+++C+EAF +K
Sbjct: 546 LKTPSLRNFKEVQRLTGRI------ASRSTDKSLPFYQILKGNNGFLWDEKCEEAFRQLK 599
Query: 906 NYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQD 942
YL PP+L P L +Y+ V + ++ VL ++D
Sbjct: 600 AYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636
Score = 75.1 bits (183), Expect = 3e-13
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 20/147 (13%)
Query: 136 CNNLWFGEDELPEVGKCHNLALHISVNCKSDMLSNVLVDTGSSLNVM---PKSTLDQLSY 192
C+++ F E+E + + H+ AL I+++ + +S +LVDTGSS++++ P S L
Sbjct: 182 CSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLIFLGPPSPL----- 236
Query: 193 REIPLRRSTFLVKAFDGSRKNVLGEIDLPITVGPENFLVTFQVMDINASYSCLLGRPWIH 252
AF LG I LP+ G + +V F V D A+Y+ +LG PWI
Sbjct: 237 ------------VAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIF 284
Query: 253 DAGAVTSTLHQKLKFVKNGKLVTVHGE 279
AV ST HQ LKF + + T+ G+
Sbjct: 285 QMKAVPSTYHQWLKFPTSNGVETIWGD 311
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 267 bits (683), Expect = 3e-71
Identities = 163/539 (30%), Positives = 269/539 (49%), Gaps = 50/539 (9%)
Query: 546 LEQEKKAIQPHQEEIELINIGIEENKREIKIGAALEEGVKKKIIQLLREYPDIFAWSYED 605
++ K ++P + + + +G+ I + V I +L++ Y +S +D
Sbjct: 820 IKAPKVDLKPLPKGLRYVFLGLNSTYPVIVNDELTADQVNLLITELMK-YRKAIGYSLDD 878
Query: 606 MPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 665
+ G+ P + HRI + E + RR +P++ +K E+ K +DAG + + WV+
Sbjct: 879 IKGISPTLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVS 938
Query: 666 NIVPVPKKDGKV------------------RMCVDFRDLNKASPKDNFPLPHIDMLVDNT 707
+ VPKK G RMC+++R LN AS K++FPLP ID +++
Sbjct: 939 PVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERL 998
Query: 708 AQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 767
A + F+D +SG+ QI + P D+ KT+F P+GTF YK MPFGL NA AT+QR MT++
Sbjct: 999 ANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSI 1058
Query: 768 FHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 827
F D+I + VEV++DD V + + L ++ +R + L LN KC F VR G +LG
Sbjct: 1059 FSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLG 1118
Query: 828 FIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 887
+S++GIEVD K+ + ++ P+T K +R FLG + FI + P+ +LL K
Sbjct: 1119 RKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTRLLCK 1178
Query: 888 NQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQDETGKK 947
++DEC AF IK L+ PI+ P P ++ D
Sbjct: 1179 ETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFP--FEIITMD---------------- 1220
Query: 948 EHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKA 1007
D + RY EK A+ +A ++ R YLV + + +++I+ K
Sbjct: 1221 ------------DAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKK 1268
Query: 1008 AVTGKNARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLK 1066
+ RW +LL E+D+ +K I+ + ADHL+ ++D I+ P+E++M ++
Sbjct: 1269 DTKPRLLRWILLLQEFDMEIVDKKGIENGV-ADHLSRMRIEDEVLIDDSMPEEQLMAIQ 1326
Score = 69.3 bits (168), Expect = 1e-11
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 1252 PWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAE 1311
PWY D +L+S E PP S +KK + + F D LY D + CV E E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 1312 QLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPP 1370
++ H +G H AT TMS K+L+AG++W +M D + KC +
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMS-KILQAGFWWPSMFKDAQEFISKCDSFE---------- 1442
Query: 1371 HALNVISSPWPFSMWGIDMNG 1391
F +WGID G
Sbjct: 1443 ----------NFDVWGIDFMG 1453
Score = 30.4 bits (67), Expect = 7.4
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 19/111 (17%)
Query: 169 SNVLVDTGSSLNVMPKSTLDQLSYREI-PLRRSTFLVKAFDGSRKNVLGEI-DLPITVG- 225
S L D G+S+++MP +L + + P S L D S + G + DLP+ +G
Sbjct: 614 SKCLCDLGASVSLMPLPVAKKLGFNKYKPCNISLILA---DRSVRISHGLLEDLPVMIGV 670
Query: 226 ---PENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKL 273
P +F+V MD +LGRP++ A A+ VK GK+
Sbjct: 671 VEVPTDFVVL--EMDEEPKDPLILGRPFLARARAIID--------VKKGKI 711
>At2g10780 pseudogene
Length = 1611
Score = 267 bits (682), Expect = 4e-71
Identities = 156/461 (33%), Positives = 248/461 (52%), Gaps = 18/461 (3%)
Query: 575 KIGAALEEGVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPECPPVRQKLRR 633
++GA+ E K I ++ E+ D+FA + G+ P + I +P P+ + R
Sbjct: 615 EVGASAE----LKDIPIVNEFSDVFA----AVSGVPPDRSDPFTIELEPGTTPISKAPYR 666
Query: 634 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 693
P K+K ++++ +D GF+ P W A ++ V KKDG R+C+D+R LNK + K+
Sbjct: 667 MAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 725
Query: 694 NFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 753
+PLP ID L+D + FS +D SGY+QI + P D KT+F T + F + VMPFGL
Sbjct: 726 KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGL 785
Query: 754 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 813
NA A + + M +F D + + V ++++D++V S E H E+L + ERLR+++L
Sbjct: 786 TNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKL 845
Query: 814 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISH 873
+KC+F RS LG ++S +G+ VDP+K+R+I+E P PR ++R FLG Y RF+
Sbjct: 846 SKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMS 905
Query: 874 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDES 933
+ P+ +L K+ W+DEC+++F +K L P+LV P EG P +Y
Sbjct: 906 FASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVG 965
Query: 934 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 993
+GCVL Q K I Y S++ E Y + A+ + K R YL +
Sbjct: 966 LGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQI 1019
Query: 994 ISRMDPIKYIFEKAAVTGKNARWQMLLSEY--DIVFKTQKA 1032
+ +KYIF + + + RW L+++Y DI + KA
Sbjct: 1020 YTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKA 1060
Score = 40.4 bits (93), Expect = 0.007
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 18/194 (9%)
Query: 1188 VELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIENVIDQTGENV 1247
+++ + P NQ+ADAL+ S + V ++ + HV A+ ++ G
Sbjct: 1051 LDIAYHPGKANQVADALSRRRSEVEAER-SQVDLVNMMGT---LHVNALSKEVEPLGLGA 1106
Query: 1248 VDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDE 1307
D I+ R+ Q+ KT + ++ +G I+ CV
Sbjct: 1107 ADQADLLSRIR-LAQERDEEIKGWAQNNKTEYQTSN----NGTIVVNGRV------CVPN 1155
Query: 1308 HEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADK 1365
A E+++ + H F H + M R L R Y+W+ M+ D + KC CQ+ +
Sbjct: 1156 DRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKAE 1214
Query: 1366 IHVPPHALNVISSP 1379
VP L + P
Sbjct: 1215 HQVPSGLLQNLPIP 1228
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 263 bits (673), Expect = 4e-70
Identities = 150/456 (32%), Positives = 245/456 (52%), Gaps = 13/456 (2%)
Query: 589 IQLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKSEVQ 647
I++++E+ D+F + + GL P + I +P P+ + R P ++K +++
Sbjct: 457 IRVVQEFQDVF----QSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLK 512
Query: 648 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDMLVDNT 707
+ GF+ P W A ++ V KKDG R+C+D+R+LN+ + K+ +PLP ID L+D
Sbjct: 513 DLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQL 571
Query: 708 AQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 767
FS +D SGY+QI ++ D KT+F T +G F + VMPFGL NA A + R M ++
Sbjct: 572 RGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSV 631
Query: 768 FHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 827
F + + + V +++DD++V S E+ +L ++ E+LR+ KL +KC+F R LG
Sbjct: 632 FQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLG 691
Query: 828 FIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 887
IVS +G+ VDP+K+ AIR+ P P ++R FLG Y RF+ + P+ KL K
Sbjct: 692 HIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGK 751
Query: 888 NQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQDETGKK 947
+ P VW+ EC+E F S+K L P+L P G+P ++Y +GCVL Q +
Sbjct: 752 DVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGK---- 807
Query: 948 EHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKA 1007
I Y S++ E Y + A+ +A K R YL + + +KYIF +
Sbjct: 808 --VIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQP 865
Query: 1008 AVTGKNARWQMLLSEYDIVFKTQKAIKGSILADHLA 1043
+ + RW L+++YD+ K +++ D L+
Sbjct: 866 ELNLRQRRWMELVADYDLEIAYHPG-KANVVVDALS 900
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 259 bits (663), Expect = 6e-69
Identities = 157/497 (31%), Positives = 258/497 (51%), Gaps = 24/497 (4%)
Query: 548 QEKKAIQPHQEEIELINIGIEENKREIKIGAALEEGVKKKIIQLLREYPDIFAWSYEDMP 607
Q KK I+ E L+ I + E+ ++ + I++++E+ D+F + +
Sbjct: 453 QAKKMIEKGCEAY-LVTISMPESLGQVAVSD----------IRVIQEFEDVF----QSLQ 497
Query: 608 GLDPKIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVAN 666
GL P + I +P P+ + R P ++K +++ + GF+ P W A
Sbjct: 498 GLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSP-WGAP 556
Query: 667 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIK 726
++ V KKDG R+C+D+R LN + K+ +PLP ID L+D FS +D SGY+QI
Sbjct: 557 VLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIP 616
Query: 727 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 786
++ D KT+F T +G F + VMPF L NA A + R M ++F + + + V +++DD++V
Sbjct: 617 IAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVY 676
Query: 787 STDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 846
S E+H +L ++ E+LR+ KL +KC+F R LG IVS +G+ VDP+K+ AIR
Sbjct: 677 SKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIR 736
Query: 847 EMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKN 906
+ P P ++R FL Y RF+ + P+ KL K+ P VW+ EC+E F S+K
Sbjct: 737 DWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKE 796
Query: 907 YLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYT 966
L P+L P G+P ++Y +GCVL Q+ + I Y S++ E Y
Sbjct: 797 MLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGK------VIAYASRQLRKHEGNYP 850
Query: 967 MLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKNARWQMLLSEYDIV 1026
+ + +A K R YL + + +KYIF + + + RW L+++YD+
Sbjct: 851 THDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLE 910
Query: 1027 FKTQKAIKGSILADHLA 1043
K +++AD L+
Sbjct: 911 IAYHPG-KANVVADALS 926
Score = 33.9 bits (76), Expect = 0.67
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 1306 DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADK 1365
DE +++ + H F H M R L R Y W+ M+ D +C CQ+ +
Sbjct: 1012 DEELRREILSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQLVKAE 1070
Query: 1366 IHVP 1369
VP
Sbjct: 1071 HQVP 1074
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 251 bits (640), Expect = 3e-66
Identities = 153/501 (30%), Positives = 253/501 (49%), Gaps = 25/501 (4%)
Query: 546 LEQEKKAIQPHQEEIELINIGIEENKREIKIGAALEEGVKKKIIQLLREYPDIFAWSYED 605
L+ + + + E L+ G+ + I A E + +K + E+ D+F +
Sbjct: 401 LDCHRGRVSFERPEGSLVYQGVRPTSGSLVISAVQAEKMIEKGCEAYLEFEDVF----QS 456
Query: 606 MPGLDPKIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWV 664
+ GL P + I +P P+ + R P ++K +++ + A L
Sbjct: 457 LQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGAPVLF-------- 508
Query: 665 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQ 724
V KKDG R+C+D+R LN + K+ +PLP ID L+D FS +D SGY+
Sbjct: 509 -----VKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHL 563
Query: 725 IKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMI 784
I ++ D KT+F T +G F + VMPFGL NA A + R M ++F +++ + V +++DD++
Sbjct: 564 IPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDIL 623
Query: 785 VKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 844
V S E+H +L ++ E+LR+ KL +KC+F R LG IVS +G+ VDP+K+ A
Sbjct: 624 VYSKSLEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEA 683
Query: 845 IREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSI 904
IR+ P ++R FLG Y RF+ + P+ KL K+ P VW+ EC+E F S+
Sbjct: 684 IRDWHTPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSL 743
Query: 905 KNYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETR 964
K L P+L P G P ++Y +GCVL Q+ + I Y S++ E
Sbjct: 744 KEMLTSTPVLALPEHGEPYMVYTDASGVGLGCVLMQRGK------VIAYASRQLRKHEGN 797
Query: 965 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKNARWQMLLSEYD 1024
Y + A+ +A K R YL + + +KYIF + + + +W L+++YD
Sbjct: 798 YPTHDLEMAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYD 857
Query: 1025 IVFKTQKAIKGSILADHLAYQ 1045
+ K +++AD L+++
Sbjct: 858 LEIAYHPG-KANVVADALSHK 877
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 250 bits (639), Expect = 3e-66
Identities = 144/414 (34%), Positives = 228/414 (54%), Gaps = 16/414 (3%)
Query: 575 KIGAALEEGVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPECPPVRQKLRR 633
++GA+ E K I ++ E+ D+FA + G+ P + I +P P+ + R
Sbjct: 110 EVGASAE----LKDILIVNEFSDVFA----AVSGVPPDRSDPFTIELEPGTTPISKAPYR 161
Query: 634 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 693
P ++K ++++ + GF+ P W A ++ V KKDG R+C+D+R LNK + K+
Sbjct: 162 MAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 220
Query: 694 NFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 753
+PLP ID L+D + FS +D SGY+QI + P D KT+F T +G F + VMPFGL
Sbjct: 221 KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGL 280
Query: 754 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 813
NA A + + M +F D + + V +++DD++V S E H E+L + ERLR+++L
Sbjct: 281 TNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKL 340
Query: 814 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISH 873
+K +F RS LG ++S +G+ VDP+K+R+I+E P PR ++R FLG Y RF+
Sbjct: 341 SKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMS 400
Query: 874 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDES 933
+ P+ +L K+ W+DEC+++F +K L+ P+LV P EG P +Y
Sbjct: 401 FASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVG 460
Query: 934 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLV 987
+GCVL Q K I Y S++ E Y + A+ +A K R YL+
Sbjct: 461 LGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
Score = 40.4 bits (93), Expect = 0.007
Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 7/87 (8%)
Query: 1304 CVDEHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQI 1361
CV A E+++ + H F H + M R L R Y+W+ M D + KC CQ+
Sbjct: 544 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQL 602
Query: 1362 YADKIHVPPHALNVISSPWPFSMWGID 1388
+ VP L + P S W D
Sbjct: 603 VKAEHQVPSGLLQNL----PISEWKWD 625
>At3g11970 hypothetical protein
Length = 1499
Score = 248 bits (634), Expect = 1e-65
Identities = 153/463 (33%), Positives = 246/463 (53%), Gaps = 11/463 (2%)
Query: 581 EEGVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMAL 640
E G + + ++L EYPDIF P + H+I PV Q+ R
Sbjct: 558 ELGEESVVEEVLNEYPDIFIEPTALPPFREKH--NHKIKLLEGSNPVNQRPYRYSIHQKN 615
Query: 641 KIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHI 700
+I V+ + G + P + + +V V KKDG R+CVD+R+LN + KD+FP+P I
Sbjct: 616 EIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLI 674
Query: 701 DMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATY 760
+ L+D +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA AT+
Sbjct: 675 EDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATF 734
Query: 761 QRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGV 820
Q M +F + K V V+ DD++V S+ E+H ++L ++FE +R KL +KC F V
Sbjct: 735 QGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAV 794
Query: 821 RSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGP 880
+ LG +S +GIE DP K++A++E P P T KQ+RGFLG Y RF+ GP
Sbjct: 795 PKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP 854
Query: 881 IFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQ 940
+ L K W Q+AF+ +K L + P+L P+ + ++ + +G VL Q
Sbjct: 855 L-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ 913
Query: 941 QDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPI 1000
+ H + Y+S++ + ++ EK A+ +A ++ RHYL+ + + +
Sbjct: 914 EG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSL 967
Query: 1001 KYIFEKAAVTGKNARWQMLLSEYDIVFKTQKAIKGSILADHLA 1043
KY+ E+ T +W L E+D + ++ K +++AD L+
Sbjct: 968 KYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009
>At1g36590 hypothetical protein
Length = 1499
Score = 248 bits (634), Expect = 1e-65
Identities = 153/463 (33%), Positives = 246/463 (53%), Gaps = 11/463 (2%)
Query: 581 EEGVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMAL 640
E G + + ++L EYPDIF P + H+I PV Q+ R
Sbjct: 558 ELGEESVVEEVLNEYPDIFIEPTALPPFREKH--NHKIKLLEGSNPVNQRPYRYSIHQKN 615
Query: 641 KIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHI 700
+I V+ + G + P + + +V V KKDG R+CVD+R+LN + KD+FP+P I
Sbjct: 616 EIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLI 674
Query: 701 DMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATY 760
+ L+D +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA AT+
Sbjct: 675 EDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATF 734
Query: 761 QRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGV 820
Q M +F + K V V+ DD++V S+ E+H ++L ++FE +R KL +KC F V
Sbjct: 735 QGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAV 794
Query: 821 RSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGP 880
+ LG +S +GIE DP K++A++E P P T KQ+RGFLG Y RF+ GP
Sbjct: 795 PKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP 854
Query: 881 IFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQ 940
+ L K W Q+AF+ +K L + P+L P+ + ++ + +G VL Q
Sbjct: 855 L-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ 913
Query: 941 QDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPI 1000
+ H + Y+S++ + ++ EK A+ +A ++ RHYL+ + + +
Sbjct: 914 EG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSL 967
Query: 1001 KYIFEKAAVTGKNARWQMLLSEYDIVFKTQKAIKGSILADHLA 1043
KY+ E+ T +W L E+D + ++ K +++AD L+
Sbjct: 968 KYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009
>At1g35370 hypothetical protein
Length = 1447
Score = 242 bits (618), Expect = 1e-63
Identities = 159/479 (33%), Positives = 256/479 (53%), Gaps = 21/479 (4%)
Query: 567 IEENKREI-KIGAALEEGVKKKIIQ-LLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEC 624
+ + ++EI I A + V++ ++Q ++ E+PD+FA D+P K +H+I
Sbjct: 521 VSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFA-EPTDLPPFREKH-DHKIKLLEGA 578
Query: 625 PPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFR 684
PV Q+ R +I VQ I +G + P + + +V V KKDG R+CVD+
Sbjct: 579 NPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSP-FASPVVLVKKKDGTWRLCVDYT 637
Query: 685 DLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTF 744
+LN + KD F +P I+ L+D VFS +D +GY+Q++M P+D +KT+F T G F
Sbjct: 638 ELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHF 697
Query: 745 CYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERL 804
Y VM FGL NA AT+Q M ++F D + K V V+ DD+++ S+ E+H E+L +FE +
Sbjct: 698 EYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVM 757
Query: 805 RKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRL 864
R +KL F S + LG +S + IE DP K++A++E P P T KQVRGFLG
Sbjct: 758 RLHKL--------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFA 809
Query: 865 NYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLI 924
Y RF+ + GP+ L K W+ E Q AFD++K L P+L PV + +
Sbjct: 810 GYYRRFVRNFGVIAGPL-HALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFM 868
Query: 925 MYLVVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRH 984
+ E+ C G + +K H + Y+S++ + ++ EK A +A ++ RH
Sbjct: 869 V------ETDACGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRH 922
Query: 985 YLVNHTTWLISRMDPIKYIFEKAAVTGKNARWQMLLSEYDIVFKTQKAIKGSILADHLA 1043
YL+ + + +KY+ E+ T +W L E+D + ++ K +++AD L+
Sbjct: 923 YLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQG-KENLVADALS 980
>At2g14040 putative retroelement pol polyprotein
Length = 841
Score = 232 bits (592), Expect = 1e-60
Identities = 153/503 (30%), Positives = 241/503 (47%), Gaps = 79/503 (15%)
Query: 592 LREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQID 651
LR+Y +S +D+ G+ P + H I + E + RR + ++ +K E+ K +D
Sbjct: 340 LRKYRKALGYSLDDITGISPTLCMHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLD 399
Query: 652 AGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDFRDLNKASPKD 693
AG + + WV+ + VPKK G + RMC+D+R LN A+ KD
Sbjct: 400 AGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKD 459
Query: 694 NFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 753
NFPL ID +++ + + F+DG+ G+ QI + P+D+EKT+F P+GTF Y+ MPFGL
Sbjct: 460 NFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGL 519
Query: 754 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 813
NA AT+Q M +F DMI +EV++DD +V E++H L LN
Sbjct: 520 CNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKH---------------LVLNW 564
Query: 814 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISH 873
K F VR G +LG +S+KG+EVD K+ +R FLG + RFI
Sbjct: 565 EKSHFMVRDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGHAGFYRRFIKD 611
Query: 874 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDES 933
+ P +LL K Q ++D C +AF+ +K L+ I+ PP P + D
Sbjct: 612 FSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVICDASDYV 671
Query: 934 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 993
+G VLGQ+ + KK HAIYY S+ + ++ HT
Sbjct: 672 VGAVLGQRKD--KKLHAIYYASRTLDGAQ-----------------------VIVHTVHA 706
Query: 994 ISRMDPIKYIFEKAAVTGKNARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPI 1053
++Y+ K + RW +LL ++D+ K +K I+ + AD+L+ + + +
Sbjct: 707 -----ALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEV-ADNLSRLRVQEEVLM 760
Query: 1054 EFDFPDEEIMYLKSKDCEEPLIG 1076
P E + + +DC +G
Sbjct: 761 RDILPGENLASI--EDCYMDEVG 781
>At2g10690 putative retroelement pol polyprotein
Length = 622
Score = 201 bits (512), Expect = 2e-51
Identities = 115/333 (34%), Positives = 183/333 (54%), Gaps = 7/333 (2%)
Query: 732 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEE 791
++KT+F P GTF YK M FGL NA T+QR MT++F D I + +EV++DD S+
Sbjct: 163 KKKTTFTCPNGTFAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSGFSSC-- 220
Query: 792 QHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAP 851
+ L ++ ER + L LN KC F V G +LG +S KGIEVD K+ + ++ P
Sbjct: 221 --LLNLCRVLERCEETNLVLNWEKCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPP 278
Query: 852 RTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLKP 911
+T K +R FLG + RFI + P+ +LL K ++++C +AF IK L+
Sbjct: 279 KTVKDIRSFLGHAEFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSA 338
Query: 912 PILVPPVEGRPLIMYLVVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKT 971
PI P P + FD ++G VL Q+ + K H IYY S+ + +TRY +EK
Sbjct: 339 PIFQAPNWDHPFEIMCDAFDYAVGAVLDQKID--DKLHVIYYASRTMDEAQTRYATIEKE 396
Query: 972 CCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKNARWQMLLSEYDIVFKTQK 1031
A+ +A +++R YLV + +++I+ K + RW +LL E+D+ +K
Sbjct: 397 LLAVVFAFEKIRSYLVGFKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIIDKK 456
Query: 1032 AIKGSILADHLAYQPLDDYQPIEFDFPDEEIMY 1064
++ + ADHL+ ++D PI+ P+E++M+
Sbjct: 457 GVENGV-ADHLSRMRIEDSVPIDDTMPEEQLMF 488
>At2g06890 putative retroelement integrase
Length = 1215
Score = 201 bits (512), Expect = 2e-51
Identities = 141/460 (30%), Positives = 228/460 (48%), Gaps = 41/460 (8%)
Query: 587 KIIQLLREYPDIFAWSYEDMP-GLDP-KIVEHRIPTKPECPPVRQKLRRTHPDMALKIKS 644
++ LL++Y D+F ED P GL P + +EH+I P + RT+P
Sbjct: 407 EMTSLLQDYKDVFP---EDNPKGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVET----K 459
Query: 645 EVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDMLV 704
E+Q+Q KDG RMC D R +N + K P+P +D ++
Sbjct: 460 ELQRQ-----------------------KDGSWRMCFDCRAINNVTVKYCHPIPRLDDML 496
Query: 705 DNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGM 764
D +FS +D SGY+QI+M+ D KT+F T G + + VMPFGL +A +T+ R M
Sbjct: 497 DELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLM 556
Query: 765 TTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGK 824
+ I V VY DD++V S +H+E+L + LRK +L N KCTF +
Sbjct: 557 NHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLV 616
Query: 825 LLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKL 884
LGF+VS G++VD +KV+AIR+ P+P+T +VR F G + RF + P+ ++
Sbjct: 617 FLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEV 676
Query: 885 LRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFD-ESMGCVLGQQDE 943
++K+ W +EAF S+K+ L P+L+ L +L F+ E +G
Sbjct: 677 MKKDVGFKWEKAQEEAFQSLKDKLTNAPVLI-------LSEFLKTFEIECDASGIGIGAV 729
Query: 944 TGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYI 1003
+ + I + S+K Y +K AL A +R +HYL + + + +K++
Sbjct: 730 LMQDQKLIAFFSEKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHL 789
Query: 1004 FEKAAVTGKNARWQMLLSEYDIVFKTQKAIKGSILADHLA 1043
+ + ++ARW + + V K +K K +++AD L+
Sbjct: 790 KGQQKLNKRHARWVEFIETFAYVIKYKKG-KDNVVADALS 828
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,004,346
Number of Sequences: 26719
Number of extensions: 1457006
Number of successful extensions: 3705
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3467
Number of HSP's gapped (non-prelim): 193
length of query: 1391
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1279
effective length of database: 8,326,068
effective search space: 10649040972
effective search space used: 10649040972
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 66 (30.0 bits)
Medicago: description of AC145220.4