BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145219.13 - phase: 0 /pseudo
(702 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07730 putative non-LTR retroelement reverse transcriptase 52 1e-06
At2g31080 putative non-LTR retroelement reverse transcriptase 49 1e-05
At3g32110 non-LTR reverse transcriptase, putative 47 3e-05
At4g29090 putative protein 45 1e-04
At2g05200 putative non-LTR retroelement reverse transcriptase 45 1e-04
At1g29650 reverse transcriptase, putative 45 2e-04
At2g45230 putative non-LTR retroelement reverse transcriptase 43 5e-04
At2g16680 putative non-LTR retroelement reverse transcriptase 43 5e-04
At2g15510 putative non-LTR retroelement reverse transcriptase 43 5e-04
At2g01550 putative non-LTR retroelement reverse transcriptase 43 5e-04
At1g47910 reverse transcriptase, putative 42 9e-04
At3g31420 hypothetical protein 42 0.001
At2g41580 putative non-LTR retroelement reverse transcriptase 42 0.001
At1g31030 F17F8.5 42 0.002
At2g17910 putative non-LTR retroelement reverse transcriptase 41 0.003
At2g17610 putative non-LTR retroelement reverse transcriptase 40 0.003
At2g01840 putative non-LTR retroelement reverse transcriptase 40 0.004
At4g15590 reverse transcriptase like protein 39 0.008
At3g45550 putative protein 39 0.010
At2g40680 putative non-LTR retroelement reverse transcriptase 39 0.010
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 51.6 bits (122), Expect = 1e-06
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 570 WVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTT-MDDPPIVGVG 628
W+ +E+L ++ ++ L +SD W+ + +TVR AY++L ++ P++G
Sbjct: 587 WLLQEQLSAVAKESISADAL---LSDELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSF 643
Query: 629 -DLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLH 687
+W P +V + W + + T V VRR D+ A C+ G E+ H+
Sbjct: 644 LKQIWKLVAPERVRVFIWLVSHMVIMTNVERVRRHLSDI--ATCSVCNGADESILHVLRD 701
Query: 688 CTTFGAVWQHI 698
C +WQ +
Sbjct: 702 CPAMTPIWQRL 712
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 48.9 bits (115), Expect = 1e-05
Identities = 35/127 (27%), Positives = 56/127 (43%), Gaps = 6/127 (4%)
Query: 576 LVEECRKLLNGVVLQSDIS--DRWLWESNNDDVYTVRGAYQIL--TTMDDPPIVGVGDLV 631
L E ++ L VV+Q + D W+ D +TVR AY +L D P + + +
Sbjct: 847 LPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRI 906
Query: 632 WHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTF 691
W P +V + W + ++ + T V VRR E A C+ G ET H+ C
Sbjct: 907 WKLITPERVRVFIWLVSQNVIMTNVERVRRHL--SENAICSVCNGAEETILHVLRDCPAM 964
Query: 692 GAVWQHI 698
+W+ +
Sbjct: 965 EPIWRRL 971
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 47.4 bits (111), Expect = 3e-05
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 595 DRWLWESNNDDVYTVRGAYQILTTMDDPPIVGVGDL---VWHKQVPLKVSIMAWCLLRDR 651
DR W +D +TV+ A+ +LT DD P + L VW Q P +V + W ++
Sbjct: 1544 DRLAWGMTSDGRFTVKSAFAMLTN-DDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQA 1602
Query: 652 LPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQHI 698
+ T RR D + C G E+ H+ C +W I
Sbjct: 1603 IMTNSERKRRHLCDSDV--CQVCRGGIESILHVLRDCPAMSGIWDRI 1647
>At4g29090 putative protein
Length = 575
Score = 45.4 bits (106), Expect = 1e-04
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 17/150 (11%)
Query: 558 MEEGAWNWRRPLWVWEEELVEECRKLLNGVVLQSD--ISDRWLWESNNDDVYTVRGAYQI 615
++E WR+ + E L E + L G + I D + W+ + YTV+ Y +
Sbjct: 175 IDESGREWRKDVI---EMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWV 231
Query: 616 LT----------TMDDPPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLD 665
LT + +P + + +W Q K+ W L + LP L R L
Sbjct: 232 LTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRH-LS 290
Query: 666 VEAAGCADGCGIAETANHLFLHCTTFGAVW 695
E+A C ET NHL CT W
Sbjct: 291 KESA-CIRCPSCKETVNHLLFKCTFARLTW 319
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 45.4 bits (106), Expect = 1e-04
Identities = 28/105 (26%), Positives = 39/105 (36%), Gaps = 6/105 (5%)
Query: 595 DRWLWESNNDDVYTVRGAYQILTTMDDP---PIVGVGDLVWHKQVPLKVSIMAWCLLRDR 651
D+ W YT R Y I + P +W Q K+ + W +
Sbjct: 895 DKLAWLPVKSGQYTSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEA 954
Query: 652 LPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQ 696
LP + LVRR + + CG E+ HLF HC VW+
Sbjct: 955 LPVGIQLVRR---HISPSAACHRCGAPESTTHLFFHCEFAAQVWE 996
>At1g29650 reverse transcriptase, putative
Length = 1557
Score = 44.7 bits (104), Expect = 2e-04
Identities = 25/109 (22%), Positives = 47/109 (42%), Gaps = 14/109 (12%)
Query: 592 DISDRWLWESNNDDVYTVRGAYQILTTMDDPPIV----------GVGDLVWHKQVPLKVS 641
D+ D W+W + Y+V+ Y ++ + P ++ G+ + +W K+
Sbjct: 1271 DMDDFWVWLHSKSGEYSVKSGYWLVFQSNKPELLFKACRQPSTNGLKEKIWSTSTFPKIK 1330
Query: 642 IMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCG-IAETANHLFLHCT 689
+ W +L LP ++RRG + C CG E+ NH+ C+
Sbjct: 1331 LFLWRILSAALPVADQILRRG---MNVDPCCQICGQEGESINHVLFTCS 1376
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 43.1 bits (100), Expect = 5e-04
Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 563 WNWRRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTTMDD- 621
WNW ++ + E L G + DR+ WE + Y+V+ Y ++T + +
Sbjct: 979 WNWNLVSLLFPDNTQENILALRPG---GKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQ 1035
Query: 622 ---------PPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCA 672
P + + +W VP K+ W + + L NL R C
Sbjct: 1036 RNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHL--AREKSCV 1093
Query: 673 DGCGIAETANHLFLHCTTFGAVW 695
ET NHL C W
Sbjct: 1094 RCPSHGETVNHLLFKCPFARLTW 1116
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 43.1 bits (100), Expect = 5e-04
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 30/150 (20%)
Query: 563 WNWRRPLWVWEE---ELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQ----- 614
WN ++ ++ E +L+ R L++ D + W N+ +YTV+ Y+
Sbjct: 924 WNLKKLTELFHEKDVQLIMHQRPLISS-------EDSYCWAGTNNGLYTVKSGYERSSRE 976
Query: 615 ----ILTTMDDPPIVG-VGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAA 669
+ D P V + D VW + K+ + W L+ L + L RG
Sbjct: 977 TFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRG------I 1030
Query: 670 GCADGCGIA----ETANHLFLHCTTFGAVW 695
ADGC ET NHL C VW
Sbjct: 1031 RTADGCLFCKEEIETINHLLFQCPFARQVW 1060
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 43.1 bits (100), Expect = 5e-04
Identities = 31/140 (22%), Positives = 56/140 (39%), Gaps = 19/140 (13%)
Query: 572 WEEELVEECRKLLNGVVLQS-----DISDRWLWESNNDDVYTVRGAYQILTTMDD----- 621
W+ +L+EE + ++ ++ D W+W Y+V+ Y + +
Sbjct: 748 WKRDLLEELFYPTDVELITKRNPVVNMDDFWVWLHAKTGEYSVKSGYWLAFQSNKLDLIQ 807
Query: 622 -----PPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRG-CLDVEAAGCADGC 675
P G+ + VW + K+ + W +L LP ++RRG +D C D
Sbjct: 808 QANLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGDE- 866
Query: 676 GIAETANHLFLHCTTFGAVW 695
E+ NH+ C+ VW
Sbjct: 867 --GESTNHVLFTCSMARQVW 884
>At2g01550 putative non-LTR retroelement reverse transcriptase
Length = 1449
Score = 43.1 bits (100), Expect = 5e-04
Identities = 44/150 (29%), Positives = 63/150 (41%), Gaps = 27/150 (18%)
Query: 560 EGAWNWRRP------LWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAY 613
E AWN RR + EE +E R+ NG D++ LW+ NDD R +
Sbjct: 1214 EEAWNGRRQRRHRDNVLNQMEEALELTRQRRNG---NDDVT---LWKGKNDDY---RHCF 1264
Query: 614 QILTTMDDPPIVGVGDLVWHKQVPL-----KVSIMAWCLLRDRLPT--KVNLVRRGCLDV 666
T ++ +G+ ++ WHK V K S W + DRL T K+ L RG
Sbjct: 1265 STKETWNNTRTMGI-EVPWHKGVWFTHSTPKFSFCVWLAVYDRLSTGDKMLLWNRGLQGT 1323
Query: 667 EAAGCADGCGIAETANHLFLHCTTFGAVWQ 696
C E+ +HLF C+ VW+
Sbjct: 1324 ----CLLCRNATESRDHLFFSCSFSSEVWE 1349
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 42.4 bits (98), Expect = 9e-04
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 592 DISDRWLWESNNDDVYTVRGAYQIL-------TTMDDPPIVGVGDLVWHKQVPLKVSIMA 644
++ D W YTV+ Y TT+ P + + +W Q P K+
Sbjct: 782 NMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFL 841
Query: 645 WCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVW 695
W +L +P NL +RG L + GC E+ NH C +W
Sbjct: 842 WQILSGCVPVSENLRKRGILCDK--GCVSCGASEESINHTLFQCHPARQIW 890
>At3g31420 hypothetical protein
Length = 1491
Score = 42.0 bits (97), Expect = 0.001
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 599 WESNNDDVYTVRGAYQILT-------TMDDPPIVGVGDLVWHKQVPLKVSIMAWCLLRDR 651
W D +YTV+ AY + T T P + + L+W + K+ W +L
Sbjct: 1129 WHYTKDGMYTVKSAYWLATHLPGTTGTHPPPGDIKLKQLLWKTKTAPKIKHFCWKILSGA 1188
Query: 652 LPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQ 696
+ T ++R ++ ++ C C ET+ HLF C A W+
Sbjct: 1189 IATG-EMLRYRHINKQSI-CKRCCRDEETSQHLFFECDYAKATWR 1231
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/147 (21%), Positives = 58/147 (38%), Gaps = 28/147 (19%)
Query: 564 NWRRPLWVWEE-ELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTTM--- 619
N R L+ W+E +++ + R + + D + W N +YTV+ Y + +
Sbjct: 704 NMLRDLFPWKEIQIICQQRPMASR-------QDSFCWFGTNHGLYTVKSEYDLCSRQVHK 756
Query: 620 -------DDPPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCA 672
+ P + + +W+ K+ + W +L+ + + L RG L
Sbjct: 757 QMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVL------IE 810
Query: 673 DGCGIA----ETANHLFLHCTTFGAVW 695
DGC + ET NH+ C VW
Sbjct: 811 DGCSMCPEKNETLNHILFQCPLARQVW 837
>At1g31030 F17F8.5
Length = 872
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 591 SDISDRWLWESNNDDV---YTVRGAYQILTTMDDPPIVGVGDLVWHKQVPLKVSIMAWCL 647
SD D LW ND ++ R + ++ G VW + K ++ W
Sbjct: 666 SDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKG--VWFRHATPKYALCTWLA 723
Query: 648 LRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVW 695
+ +RLPT +++ + C ++T HLF C+ VW
Sbjct: 724 IHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVW 771
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 40.8 bits (94), Expect = 0.003
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 20/143 (13%)
Query: 564 NWRRPLWVWEE-ELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTTMDD- 621
N R L+ W++ E++ + R L D + W +++ +Y+V+ Y+ L+
Sbjct: 953 NMLRDLFPWKDVEIILKQRPLFFK-------EDSFCWLHSHNGLYSVKTGYEFLSKQVHH 1005
Query: 622 ---------PPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCA 672
P + + D +W+ K+ I W L +P + L RG + GC
Sbjct: 1006 RLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDD--GCL 1063
Query: 673 DGCGIAETANHLFLHCTTFGAVW 695
ET NH+ C VW
Sbjct: 1064 MCDTENETINHILFECPLARQVW 1086
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 40.4 bits (93), Expect = 0.003
Identities = 31/120 (25%), Positives = 48/120 (39%), Gaps = 17/120 (14%)
Query: 594 SDRWLWESNNDDVYTVRGAYQIL--------TTMDDPPIVGVGDL---VWHKQVPLKVSI 642
+D W +D Y+V+ Y +L ++ P V + +W + P K+
Sbjct: 453 NDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKH 512
Query: 643 MAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIA-ETANHLFLHCTTFGAVWQ--HIR 699
W + LPT NL RR + + CG A E NHL C +W+ HI+
Sbjct: 513 FWWRSAHNALPTAGNLKRRRLITDDT---CQRCGEASEDVNHLLFQCRVSKEIWEQAHIK 569
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/147 (23%), Positives = 56/147 (37%), Gaps = 17/147 (11%)
Query: 565 WRRPLWVWEEELVE-----ECRKLLNGVVLQSDIS-DRWLWESNNDDVYTVRGAYQILT- 617
WR W+ + E E ++L + L + + D + W + YTVR Y + T
Sbjct: 1307 WRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATH 1366
Query: 618 -TMDDPPIVGV--GDL-----VWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAA 669
+ + I+ GD+ +W ++ K+ W L L T L R
Sbjct: 1367 VNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNI--PADP 1424
Query: 670 GCADGCGIAETANHLFLHCTTFGAVWQ 696
C C ET NH+ C+ VW+
Sbjct: 1425 TCQRCCNADETINHIIFTCSYAQVVWR 1451
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 39.3 bits (90), Expect = 0.008
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 584 LNGVVLQS--DISDRWLWESNNDDVYTVRGAYQILTTMDD--PPIVGVGDLVWHKQVPLK 639
L+ VV++ + DR W+ +D +TV AY +LT ++ P + +W P +
Sbjct: 773 LHAVVIKGVLGLRDRISWQGTSDGDFTVGSAYVLLTQEEESKPCMESFFKRIWGVIAPER 832
Query: 640 VSIMAWCLLRDRLPTKVNLVRRGCLDVE 667
V + W + + + T V VRR D+E
Sbjct: 833 VRVFLWLVGQQVIMTNVERVRRHIGDIE 860
>At3g45550 putative protein
Length = 851
Score = 38.9 bits (89), Expect = 0.010
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Query: 594 SDRWLWESNNDDVYTVRGAYQILT--------TMDDP-PIVGVGDLVWHKQVPLKVSIMA 644
+DR +W N+ YTVR Y + T TM P V + +W+ + K+
Sbjct: 621 TDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFL 680
Query: 645 WCLLRDRLPTKVNLVRRGC-LDVEAAGCADGCGIAETANHLFLHCTTFGAVWQ 696
W +L LPT L RG +D GC E+ NH C W+
Sbjct: 681 WRILSKALPTTDRLTTRGMRID---PGCPRCRRENESINHALFTCPFATMAWR 730
>At2g40680 putative non-LTR retroelement reverse transcriptase
Length = 296
Score = 38.9 bits (89), Expect = 0.010
Identities = 30/126 (23%), Positives = 52/126 (40%), Gaps = 9/126 (7%)
Query: 574 EELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTTMDDPPIVGVGDLVWH 633
EE++ E R + V + D+ W W++ ++ +++L + PI +W
Sbjct: 80 EEVIRETR--VRRKVEEEDLI-LWKWKTGFKHNFSSNETWKMLRV--EKPICRWAKEIWF 134
Query: 634 KQVPLKVSIMAWCLLRDRLPTKVNLVRRGC-LDVEAAGCADGCGIAETANHLFLHCTTFG 692
+ K + W + DRL T + +D CA+ ET NHLF C
Sbjct: 135 SEATPKFFFITWLAIHDRLTTGARMRSWNTQVDTTCKFCAEP---VETRNHLFFQCPYST 191
Query: 693 AVWQHI 698
VW+ +
Sbjct: 192 QVWEKL 197
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.363 0.165 0.639
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,256,314
Number of Sequences: 26719
Number of extensions: 505069
Number of successful extensions: 1988
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1929
Number of HSP's gapped (non-prelim): 64
length of query: 702
length of database: 11,318,596
effective HSP length: 106
effective length of query: 596
effective length of database: 8,486,382
effective search space: 5057883672
effective search space used: 5057883672
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 64 (29.3 bits)
Medicago: description of AC145219.13