BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145157.11 + phase: 0 
         (74 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g30825 unknown protein                                              90  2e-19
At5g45120 chloroplast nucleoid DNA-binding protein-like                28  0.64
At3g27180 hypothetical protein                                         27  1.4
At5g33420 replication protein A1-like                                  26  4.1
At5g06090 putative protein                                             26  4.1
At4g29360 beta-1,3-glucanase-like protein                              26  4.1
At3g52520 hypothetical protein                                         26  4.1

>At1g30825 unknown protein
          Length = 318

 Score = 89.7 bits (221), Expect = 2e-19
 Identities = 44/63 (69%), Positives = 49/63 (76%)

Query: 1   MKNPNIFLLSVSLPTPSSETIFVCGLPFGAIEAIKAAYGSLVQILDPPRDGFNLTLKINL 60
           MKNPN+ LLSVSLP P  E +   GLP GAIEAIK  YG+  QILDPPRDGF+LTLK+N 
Sbjct: 46  MKNPNLLLLSVSLPNPPPEAMSFDGLPLGAIEAIKTTYGTGFQILDPPRDGFSLTLKLNF 105

Query: 61  SKV 63
           SKV
Sbjct: 106 SKV 108


>At5g45120 chloroplast nucleoid DNA-binding protein-like
          Length = 491

 Score = 28.5 bits (62), Expect = 0.64
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 13/52 (25%)

Query: 10 SVSLPTPSSETIFVCGLPFGAIEAIKAAYGSLVQILDP---PRDGFNLTLKI 58
          SVSLPTP S+T           E IK    S+  +++P    RDG+ +TL I
Sbjct: 48 SVSLPTPKSQT----------QERIKKPLSSVDVVMEPLREVRDGYLITLNI 89


>At3g27180 hypothetical protein
          Length = 499

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 39  GSLVQILDPPRDGFNLTLKINLSKVPA 65
           GS V ++DPPR G + +L+  L  VP+
Sbjct: 396 GSDVVVVDPPRRGLDASLRQMLESVPS 422


>At5g33420 replication protein A1-like
          Length = 370

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 9/19 (47%), Positives = 16/19 (83%)

Query: 44  ILDPPRDGFNLTLKINLSK 62
           +LD P+DG +LTL++++ K
Sbjct: 126 VLDLPKDGLSLTLQVHVPK 144


>At5g06090 putative protein
          Length = 500

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (65%)

Query: 11  VSLPTPSSETIFVCGLPFGAIEAI 34
           V LPTP++  I +  +PFG I A+
Sbjct: 227 VKLPTPATALIILLWIPFGIILAM 250


>At4g29360 beta-1,3-glucanase-like protein
          Length = 534

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 12/39 (30%), Positives = 22/39 (55%), Gaps = 1/39 (2%)

Query: 24  CGLPFGAIEAIK-AAYGSLVQILDPPRDGFNLTLKINLS 61
           C     ++E  K  +YG+ + ++ P  DGFN T+  N++
Sbjct: 455 CSFNGASVEVDKDPSYGNCLYMIAPATDGFNRTMAGNIT 493


>At3g52520 hypothetical protein
          Length = 133

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 14/44 (31%), Positives = 22/44 (49%)

Query: 9   LSVSLPTPSSETIFVCGLPFGAIEAIKAAYGSLVQILDPPRDGF 52
           L  S PTPSS   F+  +    I  + A + +L++I   P+  F
Sbjct: 88  LQPSTPTPSSNPSFLRRVSSSFIRLVSAFFDALLRIFPSPQKIF 131


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,709,885
Number of Sequences: 26719
Number of extensions: 57188
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 7
length of query: 74
length of database: 11,318,596
effective HSP length: 50
effective length of query: 24
effective length of database: 9,982,646
effective search space: 239583504
effective search space used: 239583504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)