BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144931.17 + phase: 0 /pseudo/partial
         (50 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g32730 26S proteasome regulatory subunit                            49  5e-07
At1g04810 26S proteasome regulatory subunit, putative                  47  1e-06

>At2g32730 26S proteasome regulatory subunit
          Length = 1004

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 1  MATTLVSSAGGMLAMLNESHISLKIHALSXLN 32
          MAT +VSSAGG+LAMLNE H  LK+HALS LN
Sbjct: 1  MATPMVSSAGGLLAMLNEPHPVLKLHALSNLN 32


>At1g04810 26S proteasome regulatory subunit, putative
          Length = 1001

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 23/31 (74%), Positives = 26/31 (83%)

Query: 1  MATTLVSSAGGMLAMLNESHISLKIHALSXL 31
          MA  +VSSAGG+LAMLNE H SLK+HALS L
Sbjct: 1  MAAAMVSSAGGLLAMLNEPHPSLKLHALSYL 31


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.316    0.123    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 949,021
Number of Sequences: 26719
Number of extensions: 20105
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 2
length of query: 50
length of database: 11,318,596
effective HSP length: 26
effective length of query: 24
effective length of database: 10,623,902
effective search space: 254973648
effective search space used: 254973648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)