BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144931.14 - phase: 0 /pseudo
         (122 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g09990 40S ribosomal protein S16                                   123  2e-29
At5g18380 40S RIBOSOMAL PROTEIN S16                                   123  2e-29
At3g04230 putative 40S ribosomal protein S16                          114  9e-27
At1g72220 RING-H2 zinc finger protein ATL3, putative                   28  1.4
At1g63660 GMP synthase                                                 27  2.4
At2g34400 hypothetical protein                                         26  4.1
At2g47860 unknown protein                                              25  7.1
At5g60170 putative protein                                             25  9.2

>At2g09990 40S ribosomal protein S16
          Length = 146

 Score =  123 bits (309), Expect = 2e-29
 Identities = 57/68 (83%), Positives = 62/68 (90%)

Query: 2  EQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD 61
          E VQCFGRKK AVAVTHCKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRFAGV+
Sbjct: 8  ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 62 MRIRVKGG 69
          MRIRV GG
Sbjct: 68 MRIRVNGG 75


>At5g18380 40S RIBOSOMAL PROTEIN S16
          Length = 146

 Score =  123 bits (308), Expect = 2e-29
 Identities = 56/68 (82%), Positives = 62/68 (90%)

Query: 2  EQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD 61
          E VQCFGRKK AVAVTHCKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFAGV+
Sbjct: 8  ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 62 MRIRVKGG 69
          MRIRV GG
Sbjct: 68 MRIRVNGG 75


>At3g04230 putative 40S ribosomal protein S16
          Length = 146

 Score =  114 bits (286), Expect = 9e-27
 Identities = 52/68 (76%), Positives = 59/68 (86%)

Query: 2  EQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD 61
          E VQCFGRKK A AVT+CKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRFAGVD
Sbjct: 8  ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 62 MRIRVKGG 69
          MRIR  GG
Sbjct: 68 MRIRATGG 75


>At1g72220 RING-H2 zinc finger protein ATL3, putative
          Length = 413

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 12  NAVAVTHCKRGRGLIKINGCPI---ELVEPEILR 42
           N++ + + KRG GLI+   CP+   E  E E LR
Sbjct: 158 NSITICNYKRGDGLIERTDCPVCLNEFEEDESLR 191


>At1g63660 GMP synthase
          Length = 534

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 21/68 (30%), Positives = 29/68 (41%), Gaps = 13/68 (19%)

Query: 17  THCKRGRGLIKINGCP----IELVEPEILRFK---------AYEPILLLGRHRFAGVDMR 63
           TH    +    + G P    ++L+EP  L FK            P+  L RH F G  + 
Sbjct: 358 THSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRELGRILNVPVGFLKRHPFPGPGLA 417

Query: 64  IRVKGGVT 71
           +RV G VT
Sbjct: 418 VRVLGDVT 425


>At2g34400 hypothetical protein
          Length = 617

 Score = 26.2 bits (56), Expect = 4.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 21  RGRGLIKINGCPIELVEPEILRFKAYEPILLLGR 54
           R RG++K  GC    +E E++ F A    L  GR
Sbjct: 558 RDRGVVKTPGCSWIEIEGELMEFLAGSDYLQCGR 591


>At2g47860 unknown protein
          Length = 635

 Score = 25.4 bits (54), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 2   EQVQCFGRKKNAVAVTHCKR--GRGLIKIN 29
           E++   GR  NA+AV  CK     GL+K++
Sbjct: 162 EEINLVGRLVNAIAVNACKEQLASGLLKLD 191


>At5g60170 putative protein
          Length = 944

 Score = 25.0 bits (53), Expect = 9.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 8  GRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAY 46
          GRK+   +V   +R   L+ I G P+ L + ++L+ K Y
Sbjct: 54 GRKQQLTSVRVIQRN--LVYIVGLPLNLADEDLLQHKEY 90


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.325    0.147    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,998,266
Number of Sequences: 26719
Number of extensions: 58817
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 8
length of query: 122
length of database: 11,318,596
effective HSP length: 87
effective length of query: 35
effective length of database: 8,994,043
effective search space: 314791505
effective search space used: 314791505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)