BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144765.9 + phase: 0
(273 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40415 selenium-binding protein-like 33 0.21
At4g35130 putative protein 30 1.1
At3g13880 hypothetical protein 30 1.8
At5g47770 farnesyl diphosphate synthase precursor (gb|AAB49290.1) 29 3.1
At3g24000 hypothetical protein 29 3.1
At2g37320 hypothetical protein 29 3.1
At5g38020 SAMT-like protein 28 4.0
At1g62940 4-coumarate-CoA ligase-like protein 28 4.0
At1g18580 unknown protein 28 4.0
At1g07980 unknown protein 28 4.0
At3g17520 unknown protein 28 5.3
At5g52630 selenium-binding protein-like 28 6.9
At3g14730 hypothetical protein 28 6.9
At5g46050 peptide transporter 27 9.0
At2g41790 putative zinc protease 27 9.0
At1g70560 alliinase like protein 27 9.0
>At5g40415 selenium-binding protein-like
Length = 608
Score = 32.7 bits (73), Expect = 0.21
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 12 FSDCLNVCAKGGLLDTGSHYIQCWKQNERADP 43
F+ LN C+ GL++ G HY + + R DP
Sbjct: 339 FTHLLNACSHSGLVEEGKHYFETMSKRYRIDP 370
>At4g35130 putative protein
Length = 804
Score = 30.4 bits (67), Expect = 1.1
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 1 MAAQVYARGSFFSDCLNVCAKGGLLDTGSHYIQCWKQNERADPG 44
+A++V S F+ L C+ G++D G Y + K+ DPG
Sbjct: 524 IASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPG 567
>At3g13880 hypothetical protein
Length = 748
Score = 29.6 bits (65), Expect = 1.8
Identities = 13/32 (40%), Positives = 16/32 (49%)
Query: 12 FSDCLNVCAKGGLLDTGSHYIQCWKQNERADP 43
F L C GGL+ G Y QC K + R +P
Sbjct: 563 FLGVLIACCHGGLVTQGLKYFQCMKNDYRINP 594
>At5g47770 farnesyl diphosphate synthase precursor (gb|AAB49290.1)
Length = 384
Score = 28.9 bits (63), Expect = 3.1
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 174 LGKALTFAKEVSSSFYELASTKVELSNKHDNIFEIVNQLKSS--RIHSSIRGEILCLWEL 231
LGK T K + S L S L + + LKS+ ++S ++ ++L
Sbjct: 10 LGK--TIKKAIPSHHLHLRSLGGSLYRRRIQSSSMETDLKSTFLNVYSVLKSDLLH---- 63
Query: 232 LDSHFRLNSSKYVWQDSMFDVSVEGMIMKNQLSVETLF 269
D F + +W D M D +V G + LSV F
Sbjct: 64 -DPSFEFTNESRLWVDRMLDYNVRGGKLNRGLSVVDSF 100
>At3g24000 hypothetical protein
Length = 633
Score = 28.9 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 12 FSDCLNVCAKGGLLDTGSHYIQCWKQNERADPGW 45
F L C+ GLLD G HY + K++ W
Sbjct: 366 FLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAW 399
>At2g37320 hypothetical protein
Length = 500
Score = 28.9 bits (63), Expect = 3.1
Identities = 22/71 (30%), Positives = 32/71 (44%), Gaps = 11/71 (15%)
Query: 44 GWANSHDLYAIEQKFMENCALNYFDKNDYRSMMKFVRAFHSIDLKRGFLQSLNLPDELLE 103
GW S D Y + + +C LN D+R+ FH + LK GF+ + L L+
Sbjct: 115 GW--SFDAYGLSSA-VRSCGLN----RDFRTGS----GFHCLALKGGFISDVYLGSSLVV 163
Query: 104 LEEESGNFMEA 114
L +SG A
Sbjct: 164 LYRDSGEVENA 174
>At5g38020 SAMT-like protein
Length = 368
Score = 28.5 bits (62), Expect = 4.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 61 NCALNYFDKNDYRSMMKFVRAFHSI 85
NC LN ND+ + K V AFH +
Sbjct: 89 NCCLNDLPDNDFNTTFKLVPAFHKL 113
>At1g62940 4-coumarate-CoA ligase-like protein
Length = 542
Score = 28.5 bits (62), Expect = 4.0
Identities = 18/44 (40%), Positives = 27/44 (60%), Gaps = 3/44 (6%)
Query: 95 LNLPDELLE-LEEESGN--FMEAAVNIAKTMGDILREADLLGKA 135
L LP+ +L+ +EE + N F+EA A T GD++R+ L KA
Sbjct: 26 LTLPEFVLQGVEEYTENVAFVEAVTGKAVTYGDVVRDTKRLAKA 69
>At1g18580 unknown protein
Length = 332
Score = 28.5 bits (62), Expect = 4.0
Identities = 23/107 (21%), Positives = 58/107 (53%), Gaps = 10/107 (9%)
Query: 163 PLKQFTQKAGLLGKALTFAKEVSSSFYELASTKVELSNKHDNI---FEIVNQLKSSRI-- 217
P FT++ + A +F+++++ LA V ++ +H+N+ +E+ ++++S ++
Sbjct: 63 PHLNFTEE---VTSASSFSRQLAEQM-TLAKAYVFIAKEHNNLHLAWELSSKIRSCQLLL 118
Query: 218 -HSSIRGEILCLWELLDSHFRLNSSKYVWQDSMFDVSVEGMIMKNQL 263
+++RG+ + E L++ Y QD+ +D++ M MK+ +
Sbjct: 119 SKAAMRGQPISFDEAKPIITGLSALIYKAQDAHYDIATTMMTMKSHI 165
>At1g07980 unknown protein
Length = 206
Score = 28.5 bits (62), Expect = 4.0
Identities = 16/52 (30%), Positives = 25/52 (47%)
Query: 173 LLGKALTFAKEVSSSFYELASTKVELSNKHDNIFEIVNQLKSSRIHSSIRGE 224
++ KA +K S S + S KV + K I+EI S + +IRG+
Sbjct: 17 VVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYEISESSSSDSVEEAIRGD 68
>At3g17520 unknown protein
Length = 298
Score = 28.1 bits (61), Expect = 5.3
Identities = 20/71 (28%), Positives = 32/71 (44%), Gaps = 7/71 (9%)
Query: 155 WSGGSKAWPLKQFTQKAGLLGKALTFAKEVSSSFYELASTKVE-----LSNKHDNIFEIV 209
W KA K+ ++ +A+ AKE + S YE A +KVE + +K ++
Sbjct: 70 WRASQKAEDAKEAAKRKA--EEAVGAAKEKAGSAYETAKSKVEEGLASVKDKASQSYDSA 127
Query: 210 NQLKSSRIHSS 220
Q+K H S
Sbjct: 128 GQVKDDVSHKS 138
>At5g52630 selenium-binding protein-like
Length = 588
Score = 27.7 bits (60), Expect = 6.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 12 FSDCLNVCAKGGLLDTGSHYIQCWKQN--ERADPGWANSHDL 51
F + LN C+ GL+D G +Y K++ E D +A+ D+
Sbjct: 321 FLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDM 362
>At3g14730 hypothetical protein
Length = 653
Score = 27.7 bits (60), Expect = 6.9
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 107 ESGNF---MEAAVNIAKTMGDILREADLLGKAGEFLDAYELVFFYVFAKS--LWSGGSKA 161
E NF ME NI T D+LG+A + +AYEL + +W +
Sbjct: 486 EGRNFLAQMETVYNILPTSDHYACVIDMLGRADKLEEAYELAISKPICDNPVVWRSILSS 545
Query: 162 WPLKQFTQKAGLLGKALTFAKEVSSSFYELASTKVELSNKHDNIFEIVNQLKSSRI 217
L A + GK L + Y L S + K++ + ++ + ++ +
Sbjct: 546 CRLHGNKDLALVAGKRLHELEPEHCGGYVLMSNVYVEAGKYEEVLDVRDAMRQQNV 601
>At5g46050 peptide transporter
Length = 582
Score = 27.3 bits (59), Expect = 9.0
Identities = 14/47 (29%), Positives = 25/47 (52%)
Query: 102 LELEEESGNFMEAAVNIAKTMGDILREADLLGKAGEFLDAYELVFFY 148
L++ + G + V + T+ +L + L+G A FL+ +L FFY
Sbjct: 436 LKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFFY 482
>At2g41790 putative zinc protease
Length = 970
Score = 27.3 bits (59), Expect = 9.0
Identities = 17/48 (35%), Positives = 24/48 (49%)
Query: 176 KALTFAKEVSSSFYELASTKVELSNKHDNIFEIVNQLKSSRIHSSIRG 223
K+L+ S E+AS K E+ + I +IV KS +H S RG
Sbjct: 917 KSLSIRVYGSQHLKEMASDKDEVPSPSVEIEDIVGFRKSQPLHGSFRG 964
>At1g70560 alliinase like protein
Length = 391
Score = 27.3 bits (59), Expect = 9.0
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 95 LNLPDELLELEEESGNFMEAAVNIAKTMGDILREADLLGKAGEF-LDAYELVFFYVFAKS 153
LN+ E + E ES NF + + K + LRE ++ ++ F L Y F F KS
Sbjct: 263 LNVLKETCKSESESENFFKYGREMMKNRWEKLRE--VVKESDAFTLPKYPEAFCNYFGKS 320
Query: 154 LWSGGSKAW 162
L S + AW
Sbjct: 321 LESYPAFAW 329
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,817,679
Number of Sequences: 26719
Number of extensions: 238470
Number of successful extensions: 736
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 18
length of query: 273
length of database: 11,318,596
effective HSP length: 98
effective length of query: 175
effective length of database: 8,700,134
effective search space: 1522523450
effective search space used: 1522523450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC144765.9