BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.7 - phase: 0 
         (482 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g31210 putative reverse transcriptase                              186  2e-47
At1g53810                                                             175  6e-44
At4g28900 putative protein                                            171  1e-42
At2g14930 pseudogene                                                  154  8e-38
At1g59265 polyprotein, putative                                       150  2e-36
At1g58889 polyprotein, putative                                       150  2e-36
At4g16870 retrotransposon like protein                                145  4e-35
At4g10690 retrotransposon like protein                                145  5e-35
At2g06950 putative retroelement pol polyprotein                       144  8e-35
At4g02960 putative polyprotein of LTR transposon                      135  5e-32
At1g44510 polyprotein, putative                                       129  3e-30
At4g16010 reverse transcriptase like protein                          127  1e-29
At1g60020 hypothetical protein                                        127  1e-29
At3g60170 putative protein                                            111  1e-24
At3g61330 copia-type polyprotein                                       90  2e-18
At3g59720 copia-type reverse transcriptase-like protein                89  7e-18
At1g58140 hypothetical protein                                         89  7e-18
At1g48710 hypothetical protein                                         88  9e-18
At2g05390 putative retroelement pol polyprotein                        77  3e-14
At1g36110 hypothetical protein                                         75  1e-13

>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  186 bits (473), Expect = 2e-47
 Identities = 129/411 (31%), Positives = 202/411 (48%), Gaps = 44/411 (10%)

Query: 14  SSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEE---FITSSDSSKSNNPAFE 70
           SSV++KL  +NY LWK+    ++   KL G++ G    P +    +    +S+  NP +E
Sbjct: 15  SSVTLKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLYE 74

Query: 71  EWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQI---IYLKSEF 127
            W   DQ +  W+  +++ E+   + +  TS+Q+W    SLA    +S +     L+   
Sbjct: 75  SWFCTDQLVRSWLFGTLSEEVLGHVHNLSTSRQIW---VSLAENFNKSSVAREFSLRQNL 131

Query: 128 HSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVV----KLS 183
             + K E     Y  + K + D L   G P+  S  I   LNGL  +Y+PI       LS
Sbjct: 132 QLLSKKEKPFSVYCREFKTICDALSSIGKPVDESMKIFGFLNGLGRDYDPITTVIQSSLS 191

Query: 184 DHTTLSWVDLQAQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRG--- 240
              T ++ D+ +++  F+S+++      ++  +   N+  + +    ++N N   RG   
Sbjct: 192 KLPTPTFNDVVSEVQGFDSKLQSYEEAASVTPHLAFNI-ERSESGSPQYNPNQKGRGRSG 250

Query: 241 -SNFRGWRGGRGRGRSS----------KAPCQVCGKTNHTAINCFHRFDKNYSRSNYSAD 289
            +  RG    RGRG S           +  CQ+CG+T HTA+ C++RFD NY        
Sbjct: 251 QNKGRGGYSTRGRGFSQHQSSPQVSGPRPVCQICGRTGHTALKCYNRFDNNY-------- 302

Query: 290 SDKQGSHNAFIASQNSVED-YDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKL 348
              Q    AF   + S +   +W+ DS A+ HVT  TN  Q  TE+ G ++++VG+G  L
Sbjct: 303 ---QAEIQAFSTLRVSDDTGKEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYL 359

Query: 349 EIVATCSSKLKSLN----LDDVLYVPNITKNLLSVSKLAADNNIFVEFDKN 395
            I  T S+ +KS N    L++VL VPNI K+LLSVSKL  D    V FD N
Sbjct: 360 PITHTGSTTIKSSNGKIPLNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDAN 410


>At1g53810 
          Length = 1522

 Score =  175 bits (443), Expect = 6e-44
 Identities = 121/413 (29%), Positives = 200/413 (48%), Gaps = 40/413 (9%)

Query: 11  DLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEF--ITSSD-SSKSNNP 67
           ++ + V+V L++ NY LWKS     + G  L G++ G+   P +   +T ++ +S+  NP
Sbjct: 10  NISNCVTVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNP 69

Query: 68  AFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSEF 127
            F  W   DQ +  W+L S A ++ + +++C TS Q+W    +     + S++  L+   
Sbjct: 70  EFYTWHQTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRL 129

Query: 128 HSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLSD--- 184
            ++ K +  ME +L  +K++ D+L   G+P+     I   LNGL  EY PI   + +   
Sbjct: 130 QTLEKKDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGLGREYEPIKTTIENSVD 189

Query: 185 -HTTLSWVDLQAQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRGSNF 243
            + +LS  ++ ++L  ++ R++       ++ +   NV     H D+ +  NNN RG   
Sbjct: 190 SNPSLSLDEVASKLRGYDDRLQSYVTEPTISPHVAFNVT----HSDSGYYHNNN-RGKGR 244

Query: 244 RGWRGG------RGRG-------------RSSKAPCQVCGKTNHTAINCFHRFDKNYSRS 284
                G      RGRG              +S   CQ+CGK  H A+ C+HRFD +Y   
Sbjct: 245 SNSGSGKSSFSTRGRGFHQQISPTSGSQAGNSGLVCQICGKAGHHALKCWHRFDNSYQHE 304

Query: 285 NYSADSDKQGSHNAFIASQNSVEDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGN 344
           +              I        ++W  DS AS HVT+  +  Q    +HG +S++V +
Sbjct: 305 DL-----PMALATMRITDVTDHHGHEWIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVAD 359

Query: 345 GDKLEIVATCSSKLKS----LNLDDVLYVPNITKNLLSVSKLAADNNIFVEFD 393
           G+ L I  T S  + S    + L +VL  P+I K+LLSVSKL +D    VEFD
Sbjct: 360 GNFLPITHTGSGSIASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFD 412


>At4g28900 putative protein
          Length = 1415

 Score =  171 bits (432), Expect = 1e-42
 Identities = 114/392 (29%), Positives = 190/392 (48%), Gaps = 39/392 (9%)

Query: 16  VSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPE--EFITSSDS-SKSNNPAFEEW 72
           V++KL   NY LWK      +   +L G++ G   CP     I + D  +++ NP F  W
Sbjct: 17  VTLKLSTANYLLWKIQFETWLNNQRLLGFVTGANPCPNATRSIRNGDQVTEATNPDFLTW 76

Query: 73  QANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSEFHSIRK 132
             NDQ+++GW+L S++ +    +    TS+++W          + S+   L+   + + K
Sbjct: 77  VQNDQKIMGWLLGSLSEDALRSVYGLHTSREVWFSLAKKYNRVSASRKSDLQRRLNPVSK 136

Query: 133 GEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLS---DHTTLS 189
            E  M +YL  +K + D+L   G P+  ++ I   LNGL  EY  +   +    D   +S
Sbjct: 137 NEKSMLEYLNCVKQICDQLDSIGCPVPENEKIFGVLNGLGQEYMLVSTMIKGSMDTYPMS 196

Query: 190 WVDLQAQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRGSNF-RGWRG 248
           + D+  +L+ F+ +++   +                    NR  +N   +G  F +    
Sbjct: 197 FEDVVFKLINFDDKLQNGQS------------------GGNRGRNNYTTKGRGFPQQISS 238

Query: 249 GRGRGRSSKAPCQVCGKTNHTAINCFHRFDKNYSRSNYSADSDKQGSHNAFIASQNSVED 308
           G      ++  CQ+C K  H+A  C+ RFD  +   ++S          AF A + S + 
Sbjct: 239 GSPSDSGTRPTCQICNKYGHSAYKCWKRFDHAFQSEDFS---------KAFAAMRVSDQK 289

Query: 309 YD-WYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIV----ATCSSKLKSLNL 363
            + W  DSGA++H+T+ T++ Q    + G++S++VGN D L I     A  +S   +L L
Sbjct: 290 SNPWVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSNQGNLPL 349

Query: 364 DDVLYVPNITKNLLSVSKLAADNNIFVEFDKN 395
            DVL  PNITK+LLSVSKL +D    +EFD +
Sbjct: 350 RDVLVCPNITKSLLSVSKLTSDYPCVIEFDSD 381


>At2g14930 pseudogene
          Length = 1149

 Score =  154 bits (390), Expect = 8e-38
 Identities = 114/401 (28%), Positives = 191/401 (47%), Gaps = 32/401 (7%)

Query: 11  DLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSN----N 66
           ++ + V+VKL   NY LWKS     + G  L G++ G    P   ++    +       N
Sbjct: 14  NISNCVTVKLTDRNYILWKSQFESFLSGQGLLGFVNGAYAAPTGTVSGPQDAGVTEAIPN 73

Query: 67  PAFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSE 126
           P ++ W  +DQ +       M+ ++ + ++  +TS ++W          + S+I  L+  
Sbjct: 74  PDYQAWFRSDQVV-------MSEDILSVVVGSKTSHEVWMNLAKHFNRISSSRIFELQRR 126

Query: 127 FHSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLSDHT 186
            HS+ K    ME+YL  +K + D+L   G+P++    I   ++GL  EY P++  L    
Sbjct: 127 LHSLSKEGKTMEEYLRYLKTICDQLASVGSPVAEKMKIFAMVHGLTREYEPLITSLEGTL 186

Query: 187 TL----SWVDLQAQLLTFESRIEQLNNLTNLNLNATANVANKFDH----RDNRFNSNNNW 238
                 S+ D+  +L  F+ R+ Q   +T+++ +   N     +     R+NR   N + 
Sbjct: 187 DAFPGPSYEDVVYRLKNFDDRL-QGYTVTDVSPHLAFNTFRSSNRGRGGRNNRGKGNFST 245

Query: 239 RGSNFRGW--RGGRGRGRSSKAPCQVCGKTNHTAINCFHRFDKNYSRSNYSADSDKQGSH 296
           RG  F+            S K  CQ+CGK  H A+ C+HRFD +Y  S  +A      + 
Sbjct: 246 RGRGFQQQFSSSSSSVSASEKPMCQICGKRGHYALQCWHRFDDSYQHSEAAA-----AAF 300

Query: 297 NAFIASQNSVEDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCSS 356
           +A   +  S +D  W  DS A+ H+T+ +++ Q +  + G ++++  +G+ L I    S+
Sbjct: 301 SALHITDVS-DDSGWVPDSAATAHITNNSSRLQQMQPYLGNDTVMASDGNFLPITHIGSA 359

Query: 357 KLKS----LNLDDVLYVPNITKNLLSVSKLAADNNIFVEFD 393
            L S    L L DVL  PNI K+LLSVSKL  D      FD
Sbjct: 360 NLPSTSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFD 400


>At1g59265 polyprotein, putative
          Length = 1466

 Score =  150 bits (379), Expect = 2e-36
 Identities = 107/410 (26%), Positives = 195/410 (47%), Gaps = 28/410 (6%)

Query: 7   NNKNDLPSSVS--VKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKS 64
           NN + L  ++S   KL   NY +W   V  +  G +L G++ G+   P   I  +D++  
Sbjct: 11  NNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATI-GTDAAPR 69

Query: 65  NNPAFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLK 124
            NP +  W+  D+ +   +L +++  +   +    T+ Q+W+  + +    +   +  L+
Sbjct: 70  VNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR 129

Query: 125 SEFHSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKL-S 183
           ++     KG   ++DY+  +    D+L L G P+ + + + + L  L  EY P++ ++ +
Sbjct: 130 TQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAA 189

Query: 184 DHTTLSWVDLQAQLLTFESRIEQLNNLTNLNLNATA------------NVANKFDHRDNR 231
             T  +  ++  +LL  ES+I  +++ T + + A A            N  N+ +  DNR
Sbjct: 190 KDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNR 249

Query: 232 FNSNNN--WRGSNFRGWRGGRGRGRSSKAPCQVCGKTNHTAINCF---HRFDKNYSRSNY 286
            N+NN+  W+ S+   +     + +     CQ+CG   H+A  C    H      S+   
Sbjct: 250 NNNNNSKPWQQSS-TNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPP 308

Query: 287 SADSDKQGSHNAFIASQNSVEDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGD 346
           S  +  Q   N  + S  S    +W  DSGA++H+T   N       + G + ++V +G 
Sbjct: 309 SPFTPWQPRANLALGSPYS--SNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGS 366

Query: 347 KLEIVAT----CSSKLKSLNLDDVLYVPNITKNLLSVSKLAADNNIFVEF 392
            + I  T     S+K + LNL ++LYVPNI KNL+SV +L   N + VEF
Sbjct: 367 TIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEF 416


>At1g58889 polyprotein, putative
          Length = 1466

 Score =  150 bits (379), Expect = 2e-36
 Identities = 107/410 (26%), Positives = 195/410 (47%), Gaps = 28/410 (6%)

Query: 7   NNKNDLPSSVS--VKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKS 64
           NN + L  ++S   KL   NY +W   V  +  G +L G++ G+   P   I  +D++  
Sbjct: 11  NNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATI-GTDAAPR 69

Query: 65  NNPAFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLK 124
            NP +  W+  D+ +   +L +++  +   +    T+ Q+W+  + +    +   +  L+
Sbjct: 70  VNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR 129

Query: 125 SEFHSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKL-S 183
           ++     KG   ++DY+  +    D+L L G P+ + + + + L  L  EY P++ ++ +
Sbjct: 130 TQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAA 189

Query: 184 DHTTLSWVDLQAQLLTFESRIEQLNNLTNLNLNATA------------NVANKFDHRDNR 231
             T  +  ++  +LL  ES+I  +++ T + + A A            N  N+ +  DNR
Sbjct: 190 KDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNR 249

Query: 232 FNSNNN--WRGSNFRGWRGGRGRGRSSKAPCQVCGKTNHTAINCF---HRFDKNYSRSNY 286
            N+NN+  W+ S+   +     + +     CQ+CG   H+A  C    H      S+   
Sbjct: 250 NNNNNSKPWQQSS-TNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPP 308

Query: 287 SADSDKQGSHNAFIASQNSVEDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGD 346
           S  +  Q   N  + S  S    +W  DSGA++H+T   N       + G + ++V +G 
Sbjct: 309 SPFTPWQPRANLALGSPYS--SNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGS 366

Query: 347 KLEIVAT----CSSKLKSLNLDDVLYVPNITKNLLSVSKLAADNNIFVEF 392
            + I  T     S+K + LNL ++LYVPNI KNL+SV +L   N + VEF
Sbjct: 367 TIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEF 416


>At4g16870 retrotransposon like protein
          Length = 1474

 Score =  145 bits (367), Expect = 4e-35
 Identities = 98/396 (24%), Positives = 192/396 (47%), Gaps = 17/396 (4%)

Query: 11  DLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSNNPAFE 70
           ++ +S   KL  NNY +W   +  ++ G +L G++ G+ + P   +T+++   S NP + 
Sbjct: 25  NINTSNVTKLTSNNYLMWSLQIHALLDGYELAGHLDGSIETPAPTLTTNNVV-SANPQYT 83

Query: 71  EWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSEFHSI 130
            W+  D+ +   ++ +++  +   +     + Q+W    +     +   I  L+++   +
Sbjct: 84  LWKRQDRLIFSALIGAISPPVQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQL 143

Query: 131 RKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKL-SDHTTLS 189
           +KG   +++Y++    L D+L + G P+ + + + + L GL  +Y  +V ++     T S
Sbjct: 144 KKGTKTIDEYVLSHTTLLDQLAILGKPMEHEEQVERILEGLPEDYKTVVDQIEGKDNTPS 203

Query: 190 WVDLQAQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWR--GSNFRGWR 247
             ++  +L+  E+++     L++ +L  +ANVA +  H +NR N+ N  R  G+ +    
Sbjct: 204 ITEIHERLINHEAKLLSTAALSSSSLPMSANVAQQRHHNNNRNNNQNKNRTQGNTYTNNW 263

Query: 248 GGRGRGRSSKAP-------CQVCGKTNHTAINCFHRFDKNYSRSNYSADSDKQGSHNAFI 300
                 +S + P       CQ+C    H+A  C  +       S+ SA +       A +
Sbjct: 264 QPSANNKSGQRPFKPYLGKCQICNVQGHSARRC-PQLQAMQPSSSSSASTFTPWQPRANL 322

Query: 301 ASQNSVEDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCS----S 356
           A        +W  DSGA++H+T   N    L + +  + +++ +G  L+I  T S    S
Sbjct: 323 AMGAPYTANNWLLDSGATHHITSDLNALA-LHQPYNGDDVMIADGTSLKITKTGSTFLPS 381

Query: 357 KLKSLNLDDVLYVPNITKNLLSVSKLAADNNIFVEF 392
             + L L+ VLYVP+I KNL+SV +L   N + VEF
Sbjct: 382 NARDLTLNKVLYVPDIQKNLVSVYRLCNTNQVSVEF 417


>At4g10690 retrotransposon like protein
          Length = 1515

 Score =  145 bits (366), Expect = 5e-35
 Identities = 106/388 (27%), Positives = 173/388 (44%), Gaps = 48/388 (12%)

Query: 42  DGYMLGTKKCPEE--FITSSD-SSKSNNPAFEEWQANDQRLLGWMLNSMATEMATQLLHC 98
           +G++ G    P     +T  D  S+  N  F +W   DQ +  W+  S++ E    ++  
Sbjct: 39  NGFVTGATPRPASTIIVTKDDIQSEEANQEFLKWTRIDQLVKAWIFGSLSEEALKVVIGL 98

Query: 99  ETSKQLWDEAQSLAGAHTRSQIIYLKSEFHSIRKGEMKMEDYLIKMKNLADKLKLAGNPI 158
            +++++W          + ++   L+    +  K    M+ YL ++KN+ D+L   G P+
Sbjct: 99  NSAQEVWLGLARRFNRFSTTRKYDLQKRLGTCSKAGKTMDAYLSEVKNICDQLDSIGFPV 158

Query: 159 SNSDLIIQTLNGLDSEYNPIVVKLSDHTTL----SWVDLQAQLLTFESRIEQLNNLTNLN 214
           +  + I   LNGL  EY  I   +     +     + D+  +L TF+ ++         N
Sbjct: 159 TEQEKIFGVLNGLGKEYESIATVIEHSLDVYPGPCFDDVVYKLTTFDDKLSTYT----AN 214

Query: 215 LNATANVANKFDHRDNRFNSNNNWRGSNFRGWRG-------------------GRGRGRS 255
              T ++A   D +      NNN RG  +  +RG                     G G  
Sbjct: 215 SEVTPHLAFYTD-KSYSSRGNNNSRGGRYGNFRGRGSYSSRGRGFHQQFGSGSNNGSGNG 273

Query: 256 SKAPCQVCGKTNHTAINCFHRFDKNYSRSNYSADSDKQGSHNAF----IASQNSVEDYDW 311
           SK  CQ+C K  H+A  C+ RF++NY   +           NAF    ++ QN    ++W
Sbjct: 274 SKPTCQICRKYGHSAFKCYTRFEENYLPEDLP---------NAFAAMRVSDQNQASSHEW 324

Query: 312 YFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCSSKLK----SLNLDDVL 367
             DS A+ H+T+ T+  Q+   + G +S++VGNGD L I    +  L     +L L+DVL
Sbjct: 325 LPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTLPLEDVL 384

Query: 368 YVPNITKNLLSVSKLAADNNIFVEFDKN 395
             P ITK+LLSVSKL  D      FD +
Sbjct: 385 VCPGITKSLLSVSKLTDDYPCSFTFDSD 412


>At2g06950 putative retroelement pol polyprotein
          Length = 405

 Score =  144 bits (364), Expect = 8e-35
 Identities = 96/377 (25%), Positives = 170/377 (44%), Gaps = 32/377 (8%)

Query: 11  DLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSD----SSKSNN 66
           ++ + V+V L   NY LWKS     + G  L G++ G+   P +    SD    +S S N
Sbjct: 20  NISNCVTVTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSASPN 79

Query: 67  PAFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSE 126
           P +  W   D+ +  W+L S   ++ + +++C TS ++W    +     + S++  L+  
Sbjct: 80  PEYYTWFKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSSSRLFELQRR 139

Query: 127 FHSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLSDHT 186
             ++ K +  M++YL  +K + D+L   G+P++    I   LNGL  EY PI   + +  
Sbjct: 140 LQNVSKRDKSMDEYLKDLKTICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTTIENSM 199

Query: 187 TL----SWVDLQAQLLTFESRIEQLNNLTNLNLNATANVANKFD-HRDNRFNSNNNWRGS 241
                 S  D+  +L  ++ R++     T ++ +   N+    D +    FN+ N  +G 
Sbjct: 200 DALPGPSLEDVIPKLTGYDDRLQGYLEETAVSPHVAFNITTSDDSNASGYFNAYNRGKGK 259

Query: 242 NFRGWRGGRGRGR------------------SSKAPCQVCGKTNHTAINCFHRFDKNYSR 283
           + RG      RGR                   +   CQ+CGK  H A+ C+HRF+     
Sbjct: 260 SNRGRNSFSTRGRGFHQQISSTNSSSGSQSGGTSVVCQICGKMGHPALKCWHRFN----- 314

Query: 284 SNYSADSDKQGSHNAFIASQNSVEDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVG 343
           ++Y  +   +      I         +W  DS A+ HVT+     Q    +HG ++++V 
Sbjct: 315 NSYQYEELPRALAAMRITDITDQHGNEWLPDSAATAHVTNSPRSLQQSQPYHGSDAVMVA 374

Query: 344 NGDKLEIVATCSSKLKS 360
           +G+ L I  T S+ L S
Sbjct: 375 DGNFLPITHTGSTNLAS 391


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  135 bits (340), Expect = 5e-32
 Identities = 103/407 (25%), Positives = 183/407 (44%), Gaps = 43/407 (10%)

Query: 6   NNNKNDLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSN 65
           N N  ++  S   KL   NY +W   V  +  G +L G++ G+   P   I  +D+    
Sbjct: 12  NTNILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATI-GTDAVPRV 70

Query: 66  NPAFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKS 125
           NP +  W+  D+ +   +L +++  +   +    T+ Q+W+  +           IY   
Sbjct: 71  NPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRK----------IYANP 120

Query: 126 EFHSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLS-D 184
            +  + +         ++     D+L L G P+ + + + + L  L  +Y P++ +++  
Sbjct: 121 SYGHVTQ---------LRFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAK 171

Query: 185 HTTLSWVDLQAQLLTFESRIEQLNN----------LTNLNLNATANVANKFDHRDNRFNS 234
            T  S  ++  +L+  ES++  LN+          +T+ N N   N  N+ D+R+  +N+
Sbjct: 172 DTPPSLTEIHERLINRESKLLALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRN--YNN 229

Query: 235 NNNWRGSNFRGWRGGRGRGRSSK---APCQVCGKTNHTAINC--FHRFDKNYSRSNYSAD 289
           NNN   S      G R   R  K     CQ+C    H+A  C   H+F    ++   S  
Sbjct: 230 NNNRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQ-STS 288

Query: 290 SDKQGSHNAFIASQNSVEDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLE 349
                   A +A  +     +W  DSGA++H+T   N       + G + +++ +G  + 
Sbjct: 289 PFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIP 348

Query: 350 IVATCSSKL----KSLNLDDVLYVPNITKNLLSVSKLAADNNIFVEF 392
           I  T S+ L    +SL+L+ VLYVPNI KNL+SV +L   N + VEF
Sbjct: 349 ITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEF 395


>At1g44510 polyprotein, putative
          Length = 1459

 Score =  129 bits (325), Expect = 3e-30
 Identities = 98/394 (24%), Positives = 177/394 (44%), Gaps = 23/394 (5%)

Query: 19  KLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSNNPAFEEWQANDQR 78
           KL   NY +W   +  ++ G  L GY+  +   P E  T+ +S  S NP+F  W+  D+ 
Sbjct: 32  KLTSTNYLMWSIQIHALLDGYDLAGYLDNSVVIPPE-TTTINSVVSANPSFTLWKRQDKL 90

Query: 79  LLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSEFHSIRKGEMKME 138
           +   ++ +++  + + +     S Q+W    +     +   I  L+ +   + KG   ++
Sbjct: 91  IFSALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGTKTID 150

Query: 139 DYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKL-SDHTTLSWVDLQAQL 197
           +Y+       D+L + G P+ + + +   L GL  EY  +V ++     T +  ++  +L
Sbjct: 151 EYVQSHTTRLDQLAILGKPMEHEEQVEHILKGLPEEYKTVVDQIEGKDNTPTITEIHERL 210

Query: 198 LTFESRI--EQLNNLTNLNLNATA-------NVANKFDHRD----NRFNSNNNWRGSNFR 244
           +  ES++  +++   ++  ++A A       N  N+  H++    N  N+N N       
Sbjct: 211 INHESKLLSDEVPPSSSFPMSANAVQQRNFNNNCNQNQHKNRYQGNTHNNNTNTNSQPST 270

Query: 245 GWRGGRGRGRSSKAPCQVCGKTNHTAINC--FHRFDKNYSRSNYSADSDKQGSHNAFIAS 302
             + G+   +     CQ+C    H+A  C          S S +S  +  Q   N  I S
Sbjct: 271 YNKSGQRTFKPYLGKCQICSVQGHSARRCPQLQAMQLPASSSAHSPFTPWQPRANLAIGS 330

Query: 303 QNSVEDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCSSKLKSLN 362
             +     W  DSGA++H+T   N       ++G   +++ +G  L I  T S+ L S N
Sbjct: 331 PYAAN--PWLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLPSQN 388

Query: 363 LD----DVLYVPNITKNLLSVSKLAADNNIFVEF 392
            D     VLYVP+I KNL+SV +L   N + VEF
Sbjct: 389 RDLALHKVLYVPDIRKNLISVYRLCNTNQVSVEF 422


>At4g16010 reverse transcriptase like protein
          Length = 1942

 Score =  127 bits (319), Expect = 1e-29
 Identities = 93/361 (25%), Positives = 161/361 (43%), Gaps = 40/361 (11%)

Query: 11  DLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSD----SSKSNN 66
           ++ + V+V L + NY LWKS     + G  L G++ G+   P   I   D    ++   N
Sbjct: 20  NISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISAPSPTIPVPDINGVTTDRPN 79

Query: 67  PAFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSE 126
           P F+ W   D+ +  W+L S A ++ + +++  T+ +L    Q+L               
Sbjct: 80  PEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAHELQRRLQTL--------------- 124

Query: 127 FHSIRKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLSDHT 186
                K +  M+ YL +++ + ++L   G+P+     I   LNGL  EY PI   +    
Sbjct: 125 ----EKKDKPMQVYLKELQTIYEQLASVGSPVPEKMKIFAALNGLGREYEPIKTSIEGSI 180

Query: 187 ----TLSWVDLQAQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRGSN 242
               T    ++  +L  ++ R++     ++++ +   N         N     N  RG  
Sbjct: 181 DIPPTPKLDEIMPRLNGYDDRLQAYAANSDVSPHLAFNTVQA-----NSVFYTNRGRGQG 235

Query: 243 FRGWRGGRGRGRSSKAPCQVCGKTNHTAINCFHRFDKNYSRSNYSADSDKQGSHNAFIAS 302
            R + G RG+ R +   CQ+CGK  H A+NC+HRFD     ++Y  D   Q      I  
Sbjct: 236 NRRFGGSRGQERPT---CQICGKHGHHALNCWHRFD-----NSYQLDVLPQALPATQITD 287

Query: 303 QNSVEDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCSSKLKSLN 362
                  +W  DS A+ H+T+     Q    + G +S++VGNG+ L I  T S+ + S +
Sbjct: 288 ITDHSGSEWVTDSAATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPITHTGSTSIGSTS 347

Query: 363 L 363
           +
Sbjct: 348 V 348



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 310  DWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCSSKLKSLNL 363
            +W  DS A+ H+T+     Q    + G +S++VGNG+ L I  T S+ + S ++
Sbjct: 1195 EWVTDSAATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPITHTGSTSIGSTSV 1248


>At1g60020 hypothetical protein
          Length = 1194

 Score =  127 bits (319), Expect = 1e-29
 Identities = 104/384 (27%), Positives = 174/384 (45%), Gaps = 50/384 (13%)

Query: 19  KLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSNNPAFEEWQANDQR 78
           KL   NY +W   V  ++ G  L GY+ G+   P E IT++  S +N PA++ W+  D+ 
Sbjct: 30  KLTPTNYIMWNRQVHALLDGYDLAGYIDGSVTAPSEMITTAGVSAAN-PAYKFWKRQDKL 88

Query: 79  LLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSEFHSIRKGEMKME 138
           +   +L ++ T +   L    T+ ++W++ +S+    +   I  ++       KG   + 
Sbjct: 89  IYSAILGTITTTIQPLLSRSNTAAEIWEKLKSIYATPSWGHIQQMRQHIKQWSKGTKTIT 148

Query: 139 DYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLSDHTTL-----SWVDL 193
           +Y        D+L L G P+ +++ I   L GL  +Y  +V    D T +     +  +L
Sbjct: 149 EYFQGHTTRFDELALLGKPLEHAEQIEFLLGGLSEDYKSVV----DQTEIRDKPPTLTEL 204

Query: 194 QAQLLTFESRIEQLNNLTNLNLNATANVAN-KFDHRDNRFNSNNNWRGSNFRGWRGGRGR 252
             +LL  E+++      T  +L ATA+ AN K +  +N++N+NN          R  +  
Sbjct: 205 LEKLLNREAKL-MCAAATTPSLPATAHAANYKGNSNNNQYNNNN----------RNNKSH 253

Query: 253 GRSSKAPCQVCGKTNHTAINCFHRFDKNYSRSNYSADSDKQGSHNAFIASQNSVEDYDWY 312
           G S  +   +                        S  +  Q   NA IAS  +    +W 
Sbjct: 254 GSSYNSQQSIPA----------------------SPFTPWQPRANAAIASPYNAN--NWL 289

Query: 313 FDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCSSKL----KSLNLDDVLY 368
            DSGA++H+T   N       + G   + + +G  L I  T S+ +    +SL L DVLY
Sbjct: 290 LDSGATHHITSDLNNLSLHQPYTGGEDVTIADGSGLSISHTGSALISTPSRSLALTDVLY 349

Query: 369 VPNITKNLLSVSKLAADNNIFVEF 392
           VPNI KNL+SV ++   N + VEF
Sbjct: 350 VPNIHKNLISVYRMCNANKVSVEF 373


>At3g60170 putative protein
          Length = 1339

 Score =  111 bits (277), Expect = 1e-24
 Identities = 100/376 (26%), Positives = 177/376 (46%), Gaps = 38/376 (10%)

Query: 25  YPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSNNPAFEEWQANDQRLLGWML 84
           Y  W   +   +R  +L  + L  +  P   + ++  S++   A EE +  D ++  ++ 
Sbjct: 19  YDFWSMTMENFLRSREL--WRLVEEGIPAIVVGTTPVSEAQRSAVEEAKLKDLKVKNFLF 76

Query: 85  NSMATEMATQLLHCETSKQLWDEAQSLAGAHT---RSQIIYLKSEFH--SIRKGEMKMED 139
            ++  E+   +L   TSK +W+  +      T   R+Q+  L+ EF   ++++GE K++ 
Sbjct: 77  QAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAMKEGE-KIDT 135

Query: 140 YLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKL---SDHTTLSWVDLQAQ 196
           +L +   + +K+K  G  +  S ++ + L  L  ++N +V  +   +D +TLS  +L   
Sbjct: 136 FLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTLSIDELHGS 195

Query: 197 LLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRGSNFRGWRG-GRGRGRS 255
           LL  E R         LN +     A K  H +    S    RG  FRG RG GRGRGRS
Sbjct: 196 LLVHEQR---------LNGHVQEEQALKVTHEERP--SQGRGRGV-FRGSRGRGRGRGRS 243

Query: 256 SK----APCQVCGKTNHTAINCFHRFDKNYSRSNYSA-DSDKQGSHNAFIASQNSVEDYD 310
                   C  C    H    C   ++KN   +NY+  + +++    A++    +  D  
Sbjct: 244 GTNRAIVECYKCHNLGHFQYEC-PEWEKN---ANYAELEEEEELLLMAYVEQNQANRDEV 299

Query: 311 WYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCSSKLK----SLNLDDV 366
           W+ DSG SNH+T     F +L E   + ++ +GN  ++ +V   S K+K    +  + +V
Sbjct: 300 WFLDSGCSNHMTGSKEWFSELEEGFNR-TVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEV 358

Query: 367 LYVPNITKNLLSVSKL 382
            YVP +  NLLS+ +L
Sbjct: 359 YYVPELRNNLLSLGQL 374


>At3g61330 copia-type polyprotein
          Length = 1352

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 91/413 (22%), Positives = 179/413 (43%), Gaps = 46/413 (11%)

Query: 10  NDLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSNNPAF 69
           N++P  V V L ++NY  W SL +  + G   D + +  K   E     S  S++     
Sbjct: 4   NNVPFQVPV-LTKSNYDNW-SLRMKAILGAH-DVWEIVEKGFIEPENEGS-LSQTQKDGL 59

Query: 70  EEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQ-SLAGAHT--RSQIIYLKSE 126
            + +  D++ L  +   +  +   +++   ++K+ W++ + S  GA    + ++  L+ E
Sbjct: 60  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGE 119

Query: 127 FHSI--RKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLSD 184
           F ++  ++GE+ + DY  ++  + + LK  G  + +  ++ + L  LD ++  IV  + +
Sbjct: 120 FEALQMKEGEL-VSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEE 178

Query: 185 HTTLSWVDLQ---AQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRG- 240
              L  + ++     L  +E + ++  ++    LN              R       RG 
Sbjct: 179 TKDLEAMTIEQLLGSLQAYEEKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGR 238

Query: 241 ---SNFRGWR------------GGRGRGRS--------SKAPCQVCGKTNHTAINCFHRF 277
               N RGWR              RGRG+         S   C  CGK  H A  C    
Sbjct: 239 GGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPS 298

Query: 278 DKNYSRSNYSADSDKQGSHNAFIAS---QNSVEDYDWYFDSGASNHVTHQTNKFQDLTEH 334
           +K +    +  +   Q      +AS       E++ WY DSGASNH+  + + F +L E 
Sbjct: 299 NKKFEEKAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDE- 357

Query: 335 HGKNSLVVGNGDKLEIVATCSSKLKSLN-----LDDVLYVPNITKNLLSVSKL 382
             + ++ +G+  K+E+    +  ++  N     + +V Y+P++  N+LS+ +L
Sbjct: 358 SVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQL 410


>At3g59720 copia-type reverse transcriptase-like protein
          Length = 1272

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 91/413 (22%), Positives = 178/413 (43%), Gaps = 46/413 (11%)

Query: 10  NDLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSNNPAF 69
           N++P  V V L ++NY  W SL +  + G   D + +  K   E     S  S++     
Sbjct: 4   NNVPFQVPV-LTKSNYDNW-SLRMKAILGAH-DVWEIVEKGFIEPENEGS-LSQTQKDGL 59

Query: 70  EEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQ-SLAGAHT--RSQIIYLKSE 126
            + +  D++ L  +   +  +   +++   ++K+ W++ + S  GA    + ++  L+ E
Sbjct: 60  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGE 119

Query: 127 FHSI--RKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLSD 184
           F ++  ++GE+ + DY  ++  + + LK  G  + +  ++ + L  LD ++  IV  + +
Sbjct: 120 FEALQMKEGEL-VSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEE 178

Query: 185 HTTLSWVDLQ---AQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRG- 240
              L  + ++     L  +E + ++  ++    LN              R       RG 
Sbjct: 179 TKDLEAMTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGR 238

Query: 241 ---SNFRGWR------------GGRGRGRS--------SKAPCQVCGKTNHTAINCFHRF 277
               N RGWR              RGRG+         S   C  CGK  H A  C    
Sbjct: 239 GGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPS 298

Query: 278 DKNYSRSNYSADSDKQGSHNAFIAS---QNSVEDYDWYFDSGASNHVTHQTNKFQDLTEH 334
           +K +       +   Q      +AS       E++ WY DSGASNH+  + + F +L E 
Sbjct: 299 NKKFKEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDE- 357

Query: 335 HGKNSLVVGNGDKLEIVATCSSKLKSLN-----LDDVLYVPNITKNLLSVSKL 382
             + ++ +G+  K+E+    +  ++  N     + +V Y+P++  N+LS+ +L
Sbjct: 358 SVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQL 410


>At1g58140 hypothetical protein
          Length = 1320

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 91/413 (22%), Positives = 178/413 (43%), Gaps = 46/413 (11%)

Query: 10  NDLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSNNPAF 69
           N++P  V V L ++NY  W SL +  + G   D + +  K   E     S  S++     
Sbjct: 4   NNVPFQVPV-LTKSNYDNW-SLRMKAILGAH-DVWEIVEKGFIEPENEGS-LSQTQKDGL 59

Query: 70  EEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQ-SLAGAHT--RSQIIYLKSE 126
            + +  D++ L  +   +  +   +++   ++K+ W++ + S  GA    + ++  L+ E
Sbjct: 60  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGE 119

Query: 127 FHSI--RKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLSD 184
           F ++  ++GE+ + DY  ++  + + LK  G  + +  ++ + L  LD ++  IV  + +
Sbjct: 120 FEALQMKEGEL-VSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEE 178

Query: 185 HTTLSWVDLQ---AQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRG- 240
              L  + ++     L  +E + ++  ++    LN              R       RG 
Sbjct: 179 TKDLEAMTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGR 238

Query: 241 ---SNFRGWR------------GGRGRGRS--------SKAPCQVCGKTNHTAINCFHRF 277
               N RGWR              RGRG+         S   C  CGK  H A  C    
Sbjct: 239 GGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPS 298

Query: 278 DKNYSRSNYSADSDKQGSHNAFIAS---QNSVEDYDWYFDSGASNHVTHQTNKFQDLTEH 334
           +K +       +   Q      +AS       E++ WY DSGASNH+  + + F +L E 
Sbjct: 299 NKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDE- 357

Query: 335 HGKNSLVVGNGDKLEIVATCSSKLKSLN-----LDDVLYVPNITKNLLSVSKL 382
             + ++ +G+  K+E+    +  ++  N     + +V Y+P++  N+LS+ +L
Sbjct: 358 SVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQL 410


>At1g48710 hypothetical protein
          Length = 1352

 Score = 88.2 bits (217), Expect = 9e-18
 Identities = 91/413 (22%), Positives = 178/413 (43%), Gaps = 46/413 (11%)

Query: 10  NDLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSNNPAF 69
           N++P  V V L ++NY  W SL +  + G   D + +  K   E     S  S++     
Sbjct: 4   NNVPFQVPV-LTKSNYDNW-SLRMKAILGAH-DVWEIVEKGFIEPENEGS-LSQTQKDGL 59

Query: 70  EEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWDEAQ-SLAGAHT--RSQIIYLKSE 126
            + +  D++ L  +   +  +   +++   ++K+ W++ + S  GA    + ++  L+ E
Sbjct: 60  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGE 119

Query: 127 FHSI--RKGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLDSEYNPIVVKLSD 184
           F ++  ++GE+ + DY  ++  + + LK  G  + +  ++ + L  LD ++  IV  + +
Sbjct: 120 FEALQMKEGEL-VSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEE 178

Query: 185 HTTLSWVDLQ---AQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRG- 240
              L  + ++     L  +E + ++  ++    LN              R       RG 
Sbjct: 179 TKDLEAMTIEQLLGSLQAYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGR 238

Query: 241 ---SNFRGWR------------GGRGRGRS--------SKAPCQVCGKTNHTAINCFHRF 277
               N RGWR              RGRG+         S   C  CGK  H A  C    
Sbjct: 239 GGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPS 298

Query: 278 DKNYSRSNYSADSDKQGSHNAFIAS---QNSVEDYDWYFDSGASNHVTHQTNKFQDLTEH 334
           +K +       +   Q      +AS       E++ WY DSGASNH+  + + F +L E 
Sbjct: 299 NKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDE- 357

Query: 335 HGKNSLVVGNGDKLEIVATCSSKLKSLN-----LDDVLYVPNITKNLLSVSKL 382
             + ++ +G+  K+E+    +  ++  N     + +V Y+P++  N+LS+ +L
Sbjct: 358 SVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQL 410


>At2g05390 putative retroelement pol polyprotein
          Length = 1307

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 84/352 (23%), Positives = 151/352 (42%), Gaps = 48/352 (13%)

Query: 66  NPAFEEWQANDQRLLGWMLNSMATEMATQLLHCETSKQLWD--EAQSLAGAHTR-SQIIY 122
           +P  ++ + ND      +  S+      Q+   +TSK +W+  + ++L     + +++  
Sbjct: 15  DPGSDDMEKNDMAR-ALLFQSVPESTILQVGKHKTSKAMWEAIKTRNLGAERVKEAKLQT 73

Query: 123 LKSEFHSIR-KGEMKMEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLD-SEYNPIVV 180
           L +EF  +  K    +++++ ++  ++ K +  G  I  S ++ + L  L   +Y  I+ 
Sbjct: 74  LMAEFDRLNMKDNETIDEFVGRISEISTKSESLGEEIEESKIVKKFLKSLPRKKYIHIIA 133

Query: 181 KLS---DHTTLSWVDLQAQLLTFESRI-EQLNNLTNLNLNATANVANKFDHRDNRFNSNN 236
            L    D  T  + D+  ++ T+E R+ ++ ++         AN  + +D R  R     
Sbjct: 134 ALEQILDLNTTGFEDIVGRMKTYEDRVCDEDDSPEEQGKLMYANSESSYDTRGGR----- 188

Query: 237 NWRGSNFRGWRGGRGRGR-------SSKAPCQVCGKTNHTAINCFHRF---DKNYSRSNY 286
             RG   RG   GRGRG         SK  C  C KT H A  C  R     K   +   
Sbjct: 189 -GRG---RGRSSGRGRGGYGYQQRDKSKVICYRCDKTGHYASECLDRLLKLIKAQEQQQN 244

Query: 287 SADSDKQGS---HNAFIASQNSVE--------DYDWYFDSGASNHVTHQTNKFQDLTE-- 333
           + D D+  S   H     ++ SV+        D  WY D+GASNH+T     F  L E  
Sbjct: 245 NEDDDEIESLMMHEVVYLNERSVKPKEFEACSDNSWYLDNGASNHMTGNLQWFSKLNEMI 304

Query: 334 ----HHGKNSLVVGNGDKLEIVATCSSKLKSLNLDDVLYVPNITKNLLSVSK 381
                 G +S +   G    ++ T     K+L   DV ++P++  N++S+ +
Sbjct: 305 TGKVRFGDDSRIDIKGKGSIVLITKGGIRKTLT--DVYFIPDLKSNIISLGQ 354


>At1g36110 hypothetical protein
          Length = 745

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 46/320 (14%)

Query: 81  GWMLNSMATEMATQLLHCETSKQLWDEAQSL---AGAHTRSQIIYLKSEFHSIRKGEM-K 136
           G +  S+   +  Q+    T+K +WD  ++    A     +++  L +EF  ++  E  K
Sbjct: 62  GLIFQSIPESLTLQVGTLATAKLVWDSIKTRYVGADRVKEARLQTLMAEFEKMKMKESEK 121

Query: 137 MEDYLIKMKNLADKLKLAGNPISNSDLIIQTLNGLD-SEYNPIVVKLS---DHTTLSWVD 192
           ++ +  ++  LA +    G+ I  S L+ + LN L   +Y  I+  L    D    S+ D
Sbjct: 122 IDVFAGRLAELATRSDALGSNIETSKLVKKFLNALPLRKYIHIIASLEQVLDLNNTSFED 181

Query: 193 LQAQLLTFESRI----EQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRGSNFRGWRG 248
           +  ++  +E R+    EQ ++   L    T       D +D+ + S    +G  F G   
Sbjct: 182 IVGRIKVYEERVWDGEEQEDDQGKLMYANT-------DTQDSWYASRGRGQGGGFNGRGR 234

Query: 249 GRGRGR--SSKAPCQVCGKTNHTAINCFHRFDKNYSRSNYSADSDKQGSHNAFIASQNSV 306
           GRGRG   +SK  C  C K  H A NC               DS K       +   N  
Sbjct: 235 GRGRGSRDTSKVTCYRCDKLGHYASNC--------------PDSVKPSVFETELDGDNV- 279

Query: 307 EDYDWYFDSGASNHVTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCSSKLKSLN---- 362
               WY D+GASNH+T     F  + E      +  G+   ++I    S    S N    
Sbjct: 280 ----WYLDNGASNHMTGNRAYFSKIDESI-TGKVRFGDDSCIDIKGKGSILFMSKNGEKK 334

Query: 363 -LDDVLYVPNITKNLLSVSK 381
            L +V ++P++  N++S+ +
Sbjct: 335 VLAEVYFIPDVKSNIISLGQ 354


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.316    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,224,192
Number of Sequences: 26719
Number of extensions: 413218
Number of successful extensions: 1702
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 168
length of query: 482
length of database: 11,318,596
effective HSP length: 103
effective length of query: 379
effective length of database: 8,566,539
effective search space: 3246718281
effective search space used: 3246718281
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)