BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.1 + phase: 0 /pseudo
         (52 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g18960 FAR1 - like protein                                          33  0.036
At3g06250 unknown protein                                              30  0.30
At3g59470 unknown protein                                              27  2.6
At4g12850 putative protein                                             25  5.7

>At5g18960 FAR1 - like protein
          Length = 788

 Score = 32.7 bits (73), Expect = 0.036
 Identities = 18/38 (47%), Positives = 24/38 (62%), Gaps = 1/38 (2%)

Query: 2  EEANKFWLAYSFRVGFGVRV-RFANKREDGSVSSCRML 38
          EEA +F+ AY+ R GF VR  +    R DG+VSS R +
Sbjct: 53 EEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFV 90



 Score = 27.3 bits (59), Expect = 1.5
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 3   EANKFWLAYSFRVGFGVRV-RFANKREDGSVSSCRML 38
           EA +F+ AY+  VGF VR+ +    + DGS++S R +
Sbjct: 222 EACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFV 258


>At3g06250 unknown protein
          Length = 764

 Score = 29.6 bits (65), Expect = 0.30
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 2  EEANKFWLAYSFRVGFGVRV-RFANKREDGSVSSCRML 38
          EEA  ++ +Y+ R GF VR  +    R DG+VSS R +
Sbjct: 38 EEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFV 75



 Score = 27.3 bits (59), Expect = 1.5
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 3   EANKFWLAYSFRVGFGVRV-RFANKREDGSVSSCRML 38
           EA +F+ AY+  VGF VR+ +    + DGS++S R +
Sbjct: 201 EACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFV 237


>At3g59470 unknown protein
          Length = 251

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 4   ANKFWLAYSFRVGFGVRV-RFANKREDGS 31
           A+ F+ AY+ +VGF +RV + +  R DGS
Sbjct: 82  AHGFYNAYATKVGFVIRVSKLSRSRHDGS 110


>At4g12850 putative protein
          Length = 183

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 2  EEANKFWLAYSFRVGFGVRV 21
          EEA  F++ YS R+GF VR+
Sbjct: 20 EEAKDFYVEYSKRLGFVVRM 39


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,174,657
Number of Sequences: 26719
Number of extensions: 32347
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 6
length of query: 52
length of database: 11,318,596
effective HSP length: 28
effective length of query: 24
effective length of database: 10,570,464
effective search space: 253691136
effective search space used: 253691136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)