BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144731.14 + phase: 0 /pseudo
(1343 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07010 putative retroelement pol polyprotein 273 5e-73
At2g07420 putative retroelement pol polyprotein 269 7e-72
At1g53810 259 7e-69
At2g14930 pseudogene 259 1e-68
At2g13940 putative retroelement pol polyprotein 257 4e-68
At4g10690 retrotransposon like protein 254 2e-67
At2g20460 putative retroelement pol polyprotein 252 9e-67
At4g28900 putative protein 252 1e-66
At2g16000 putative retroelement pol polyprotein 250 3e-66
At1g31210 putative reverse transcriptase 247 3e-65
At1g70010 hypothetical protein 238 2e-62
At1g44510 polyprotein, putative 223 8e-58
At4g16870 retrotransposon like protein 219 1e-56
At1g26990 polyprotein, putative 205 1e-52
At3g61330 copia-type polyprotein 199 9e-51
At1g48710 hypothetical protein 199 1e-50
At1g58140 hypothetical protein 198 2e-50
At3g45520 copia-like polyprotein 196 1e-49
At1g47650 hypothetical protein 195 2e-49
At4g10460 putative retrotransposon 190 4e-48
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 273 bits (698), Expect = 5e-73
Identities = 205/679 (30%), Positives = 320/679 (46%), Gaps = 53/679 (7%)
Query: 14 VRFTGKNYPAWEFQFRMYVKGNKLWSHLD-DVSKAPTEKAALEEWEYKDAQIISWILSSI 72
V TG NY W + ++ + ++ +SK P + E W+ ++ I+ WI +SI
Sbjct: 42 VMLTGDNYNEWSTKMLNALQAKRKTGFINGSISKPPLDNPDYENWQAVNSMIVGWIRASI 101
Query: 73 DPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQEFYSGFLNL 132
+P++ + + A ++W+ LK+ ++ N Q++ ++A +Q V ++Y L
Sbjct: 102 EPKVKSTVTFICDAHQLWSELKQRFSVGNKVHVHQIKTQLAACRQDGQPVIDYYGRLCKL 161
Query: 133 WTEHSAIIHADVPKASLAAVQEVYNTSRR------DQFLMKLRPE-FEVVRGALLNRNPV 185
W E V K L S+ QF++ L F + L+ +P
Sbjct: 162 WEEFQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGLDDSRFGGLSATLIAMDPF 221
Query: 186 PSLDTCVGELLREEQRL----LTQGTMSHDAFISEPVPVAYAAQSRG---KGRDMRQVQC 238
PSL ++REEQRL + + S F++ V ++ K RD R V C
Sbjct: 222 PSLGEIYSRVVREEQRLASVQIREQQQSAIGFLTRQSEVTADGRTDSSIIKSRD-RSVLC 280
Query: 239 FTCKQFGHVARSC-------------TAKFCKYCKQNGHVIFDCPIRPPRRTQYPTQALH 285
C + GH + C T + G R + A H
Sbjct: 281 SHCGRSGHEKKDCWQIVGFPDWWTERTNGGGRGSSSRGRGGRSSGSNNSGRGRGQVTAAH 340
Query: 286 ATTSSAAP-PTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSR--PWFLDSGASN 342
ATTS+ +P P T Q +I QM+ N G K S + LD+GAS+
Sbjct: 341 ATTSNLSPFPEFTPD------QLRVITQMIQN--KNNGTSDKLSGKMKLGDVILDTGASH 392
Query: 343 HMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDINSD----FQDVLVSPGLASNLLS 398
HMTG L N+ + + + ADG K +G +VL P L +L+S
Sbjct: 393 HMTGQLSLLTNIVTIP-SCSVGFADGRKTFAISMGTFKLSETVSLSNVLYVPALNCSLIS 451
Query: 399 VGQLVDN-NCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFISSHLSLACNNVLNSY 457
V +LV C F+ C++Q++ S +I G + ++ L ++ ++ ++ +
Sbjct: 452 VSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDAAT-TTVHKVDITTDH 510
Query: 458 EDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKTLPFPSGAHRASNC 517
WH++LGHP+ +VLS L L + +S SC VC AK FP ++++++C
Sbjct: 511 ALWHQRLGHPSFSVLSSL----PLFSGSSCSVSSRSCDVCFRAKQTREVFPDSSNKSTDC 566
Query: 518 FEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSMFKKFLTYVETQF 577
F +IH DVWG + S YF+T +DD+SR W Y L +KSEV S+ FL Y E QF
Sbjct: 567 FSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQF 626
Query: 578 QASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLL 637
SVKI RS++G E+M Y + +GI+ Q SC TPQQNG ERK+RH+L+V+R+LL
Sbjct: 627 GKSVKIIRSDNGTEFMC--LSSYFKEQGIVHQTSCVGTPQQNGRVERKHRHILNVSRALL 684
Query: 638 LQASVPPRFWVEALSTVCF 656
QAS+P +FW EA+ T +
Sbjct: 685 FQASLPIKFWGEAVMTAAY 703
>At2g07420 putative retroelement pol polyprotein
Length = 1664
Score = 269 bits (688), Expect = 7e-72
Identities = 197/696 (28%), Positives = 317/696 (45%), Gaps = 108/696 (15%)
Query: 4 MTSEKAKDFCVRFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAALE-------- 55
M + KA V G NY W + + LW+H+ S+AP+E E
Sbjct: 1 MENTKALFVPVTLKGVNYLLWARTTKTTLCSRGLWAHIL-TSEAPSEATIREGMEIVHVG 59
Query: 56 --EWEYKDAQIISWILSSIDPQMINNLRSFSTAQEMWNYLKRIY-NQDNAAKRFQLELEI 112
+W +D +++ + +S++ ++ TA+E+W L ++ NQ N ++ F+++ I
Sbjct: 60 EEKWFQEDQSVLALLQNSLEASLLEAYSYCETAKELWETLFNVFGNQSNLSRVFEVKKAI 119
Query: 113 ANYKQGNLYVQEFYSGFLNLWTEHSAIIHADV-PKASLAAVQEVYNTSRRDQ-----FLM 166
+ QG++ + + F +LW E + + PK + RR+Q L+
Sbjct: 120 NDLSQGDMEFTQHFGKFRSLWAELEMLRPNTLDPKVLI---------ERREQDKVFGLLL 170
Query: 167 KLRPEFEVVRGALLNRNPVPSLDTCVGELLREEQRLLTQGTMSHDAFISEPVPVAYAAQS 226
L + + LL + +P+L+ ++ +E+ +G +D
Sbjct: 171 TLSSTYNDLIKHLLRADKLPNLEEVCSQIQKEQ---ANRGNYKYD--------------- 212
Query: 227 RGKGRDMRQVQCFTCKQFGHVARSCTAKFCKYCKQNGHVIFDC-----PIRPPRRTQYPT 281
+ A +C++CK++GH C +RP RR
Sbjct: 213 ----------------------NNKKALWCEHCKRSGHTKEKCWTLHPHLRPGRREPRAN 250
Query: 282 QALHATTSSAAPPTITSASDGG-----SLQPEMIQQMVLAAL-------SNMGIHGKSSN 329
Q + ++ GG + +++++ L AL S H SS
Sbjct: 251 QVTGENFGTQEQSGTSNQHLGGNGAAMAASSDLVRRSDLKALIKALKESSGKSYHALSS- 309
Query: 330 VSRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDIN--SDFQDVL 387
+P +DSGAS+HM S+ + N+ GN + IA+G+++ + VGD++
Sbjct: 310 -LKPLIIDSGASHHMISDSKLISNIEPALGN--VVIANGDRIPVKGVGDLDLFDKSSKAF 366
Query: 388 VSPGLASNLLSVGQ-LVDNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQF----- 441
P SNLLSV + D NC F Q+ + +V+ +G L+ L+
Sbjct: 367 YMPTFTSNLLSVKKATTDLNCYAIFGPNEVHFQDIETSRVLGQGVTKDGLYVLEDTKPSV 426
Query: 442 -ISSHLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLA 500
+SSH S N + E WH +LGHP+S L L + N + C C L
Sbjct: 427 PLSSHFSSILGNA--NSESWHARLGHPHSRALKLLLPSTSFKNDE--------CEACILG 476
Query: 501 KSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKS 560
K FP + CF++IHSDVW SP S ++KYFVTFID+ S+FTW L SK
Sbjct: 477 KHCKSVFPKSSTIYEKCFDLIHSDVW-TSPCLSRENHKYFVTFIDEKSKFTWFTLLPSKD 535
Query: 561 EVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNG 620
V F F TYV + A +KI RS++ GEY SH F+++L GI+ Q SCP TPQQNG
Sbjct: 536 RVLEAFTNFQTYVTNHYDAKIKILRSDNRGEYTSHAFKQHLNKHGIIHQTSCPYTPQQNG 595
Query: 621 LAERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
+AERKNRHL++V R ++ +VP FW++ + + C+
Sbjct: 596 VAERKNRHLMEVRRVMMFHTNVPKHFWIDGVVSACY 631
>At1g53810
Length = 1522
Score = 259 bits (662), Expect = 7e-69
Identities = 195/691 (28%), Positives = 315/691 (45%), Gaps = 101/691 (14%)
Query: 14 VRFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAALEE--------------WEY 59
V +NY W+ QF ++ G L + AP + ++ W
Sbjct: 17 VTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNPEFYTWHQ 76
Query: 60 KDAQIISWILSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGN 119
D + SW+L S +++ + + T+ ++W L +N+ ++++ F+L+ + ++ +
Sbjct: 77 TDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRLQTLEKKD 136
Query: 120 LYVQEFYSGFLNLWTEHSAIIHADVPKASLAAVQEVYNTSRRDQFLMKLRPEFEVVRGAL 179
++ F ++ + A + + VP+ ++++ L L E+E ++ +
Sbjct: 137 NTMEVFLKDLKHI-CDQLASVGSPVPEK-----MKIFSA------LNGLGREYEPIKTTI 184
Query: 180 LNR---NPVPSLDTCVGELLREEQRL---LTQGTMS-HDAF-ISEPVPVAYAAQSRGKGR 231
N NP SLD +L + RL +T+ T+S H AF ++ Y +RGKGR
Sbjct: 185 ENSVDSNPSLSLDEVASKLRGYDDRLQSYVTEPTISPHVAFNVTHSDSGYYHNNNRGKGR 244
Query: 232 DM----------------RQVQCFTCKQFGHVARSCTAKFCKYCKQNGHVIFDCPIRPPR 275
+Q+ + Q G+ + C+ C + GH C R
Sbjct: 245 SNSGSGKSSFSTRGRGFHQQISPTSGSQAGN-----SGLVCQICGKAGHHALKCWHRFDN 299
Query: 276 RTQYPTQALHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWF 335
Q+ + AL+ M I + + W
Sbjct: 300 SYQHEDLPM--------------------------------ALATMRITDVTDHHGHEWI 327
Query: 336 LDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGD--INSD-----FQDVLV 388
DS AS H+T + L YHG+ I +ADGN L IT G I S ++VLV
Sbjct: 328 PDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGSIASSSGKIPLKEVLV 387
Query: 389 SPGLASNLLSVGQLV-DNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFISSHLS 447
P + +LLSV +L D C+V F + ++ + K++ G L+ L+ +
Sbjct: 388 CPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVMGRNRDGLYSLEEPKLQVL 447
Query: 448 LACNNVLNSYEDWHRKLGHPNSTVLSHLF--KTGLLGNKQVVCTASISCPVCKLAKSKTL 505
+ S E WHR+LGH N+ VL L K+ ++ NK V C C L KS L
Sbjct: 448 YSTRQNSASSEVWHRRLGHANAEVLHQLASSKSIIIINKVVKTV----CEACHLGKSTRL 503
Query: 506 PFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSM 565
PF AS E IH D+WG SP +S ++Y+V FID YSRFTW Y L+ KS+ FS
Sbjct: 504 PFMLSTFNASRPLERIHCDLWGPSPTSSVQGFRYYVVFIDHYSRFTWFYPLKLKSDFFST 563
Query: 566 FKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERK 625
F F VE Q +KIF+ + GGE++S +F ++LQ GI SCP TPQQNG+AERK
Sbjct: 564 FVMFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHLQDHGIQQNMSCPYTPQQNGMAERK 623
Query: 626 NRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
+RH++++ S++ Q+ +P ++W+E+ T F
Sbjct: 624 HRHIVELGLSMIFQSKLPLKYWLESFFTANF 654
>At2g14930 pseudogene
Length = 1149
Score = 259 bits (661), Expect = 1e-68
Identities = 199/678 (29%), Positives = 313/678 (45%), Gaps = 91/678 (13%)
Query: 14 VRFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPT-------EKAALEEWEYKDAQIIS 66
V+ T +NY W+ QF ++ G L ++ APT + E D Q +
Sbjct: 21 VKLTDRNYILWKSQFESFLSGQGLLGFVNGAYAAPTGTVSGPQDAGVTEAIPNPDYQ--A 78
Query: 67 WILSS---IDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQ 123
W S + +++ + T+ E+W L + +N+ ++++ F+L+ + + + ++
Sbjct: 79 WFRSDQVVMSEDILSVVVGSKTSHEVWMNLAKHFNRISSSRIFELQRRLHSLSKEGKTME 138
Query: 124 EFYSGFLNLWTEHSAIIHADVPKASLAAVQEVYNTSRRDQFLMKLRPEFEVVRGALLNRN 183
E+ + + +++ K + A+ V+ +R + P + G L +
Sbjct: 139 EYLRYLKTICDQLASVGSPVAEKMKIFAM--VHGLTR------EYEPLITSLEGTL-DAF 189
Query: 184 PVPSLDTCVGELLREEQRL---LTQGTMSHDAFISEPVPVAYAAQSRGKG-RDMRQVQCF 239
P PS + V L + RL H AF + + + +RG+G R+ R F
Sbjct: 190 PGPSYEDVVYRLKNFDDRLQGYTVTDVSPHLAFNT------FRSSNRGRGGRNNRGKGNF 243
Query: 240 TCK------QFGHVARSCTAK---FCKYCKQNGHVIFDCPIRPPRRTQYPTQALHATTSS 290
+ + QF + S +A C+ C + GH C R Q+ A A ++
Sbjct: 244 STRGRGFQQQFSSSSSSVSASEKPMCQICGKRGHYALQCWHRFDDSYQHSEAAAAAFSAL 303
Query: 291 AAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLDSGASNHMTGSSEY 350
IT SD W DS A+ H+T +S
Sbjct: 304 H----ITDVSDDSG-----------------------------WVPDSAATAHITNNSSR 330
Query: 351 LHNLHSYHGNQQIQIADGNKLSITDVGDINSD-------FQDVLVSPGLASNLLSVGQLV 403
L + Y GN + +DGN L IT +G N +DVLV P +A +LLSV +L
Sbjct: 331 LQQMQPYLGNDTVMASDGNFLPITHIGSANLPSTSGNLPLKDVLVCPNIAKSLLSVSKLT 390
Query: 404 -DNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGR-LFPLQFISSHLSLACNNVLNSYEDWH 461
D C+ F G LV+++ + KV+ KG L+ L+ + + V + E WH
Sbjct: 391 KDYPCSFTFDADGVLVKDKATCKVLTKGSSTSEGLYKLENPKFQMFYSTRQVKATDEVWH 450
Query: 462 RKLGHPNSTVLSHLFKTGLLGNK---QVVCTASISCPVCKLAKSKTLPFPSGAHRASNCF 518
+LGHPN VL LL NK Q+ + S C C+L KS LPF + AS
Sbjct: 451 MRLGHPNPQVLQ------LLANKKAIQINKSTSKMCESCRLGKSSRLPFIASDFIASRPL 504
Query: 519 EMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSMFKKFLTYVETQFQ 578
E +H D+WG +P++S ++Y+V FID+ SRF W Y L+ KS+ S+F KF ++VE Q
Sbjct: 505 ERVHCDLWGPAPVSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQ 564
Query: 579 ASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLLL 638
+ F+S+ GGE+ S+ F ++LQ GI SCP+TPQQNGLAERK+R L + +L+
Sbjct: 565 TKIGTFQSDGGGEFTSNRFLQHLQESGIQHYISCPHTPQQNGLAERKHRQLTERGLTLMF 624
Query: 639 QASVPPRFWVEALSTVCF 656
Q+ P RFWVEA T F
Sbjct: 625 QSKAPQRFWVEAFFTANF 642
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 257 bits (656), Expect = 4e-68
Identities = 203/694 (29%), Positives = 313/694 (44%), Gaps = 71/694 (10%)
Query: 14 VRFTGKNYPAWEFQFRMYVKGNKLWSHLDD-VSKAPTEKAALEEWEYKDAQIISWILSSI 72
V G NY W + ++ + ++ + + P E W ++ I+ WI +SI
Sbjct: 47 VELNGDNYNQWATEMLNALQAKRKTGFINGTIPRPPPNDPNYENWTAVNSMIVGWIRTSI 106
Query: 73 DPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQEFYSGFLNL 132
+P++ + S A +W LK+ ++ N + Q+ ++++ +Q V E+Y NL
Sbjct: 107 EPKVKATVTFISDAHLLWKDLKQRFSVGNKVRIHQIRAQLSSCRQDGQAVIEYYGRLSNL 166
Query: 133 WTEHSAIIHADVPKASLAAVQEVYNTSRR------DQFLMKL-RPEFEVVRGALLNRNPV 185
W E++ V L ++ QF++ L F + L+N +P+
Sbjct: 167 WEEYNIYKPVTVCTCGLCRCGATSEPTKEREEEKIHQFVLGLDESRFGGLCATLINMDPL 226
Query: 186 PSLDTCVGELLREEQRLLTQGTMS-----------------HDAFISEPVPVAYAAQSRG 228
PSL ++REEQRL + H + + SR
Sbjct: 227 PSLGEIYSRVIREEQRLASVHVREQKEEAVGFLARREQLDHHSRVDASSSRSEHTGGSRS 286
Query: 229 KGRDMRQVQCFTCKQFGHVARSC--TAKFCKY-CKQNGHVIFDCPIRPPR-----RTQYP 280
+V C C + GH + C F + ++NG + R R R Q
Sbjct: 287 NSIIKGRVTCSNCGRTGHEKKECWQIVGFPDWWSERNGGRGSNGRGRGGRGSNGGRGQGQ 346
Query: 281 TQALHATTSSAAPPTITSASDGGSLQPEMIQQ--MVLAAL----SNMGI--HGKSSNVSR 332
A HAT+S++ S+ PE ++ VL+ L SN G + S +S
Sbjct: 347 VMAAHATSSNS------------SVFPEFTEEHMRVLSQLVKEKSNSGSTSNNNSDRLSG 394
Query: 333 PW-----FLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDINSD----F 383
LDSGAS+HMTG+ L N+ + ADG+K VG +
Sbjct: 395 KTKLGDIILDSGASHHMTGTLSSLTNVVPVPPCP-VGFADGSKAFALSVGVLTLSNTVSL 453
Query: 384 QDVLVSPGLASNLLSVGQLV-DNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFI 442
+VL P L L+SV +L+ C F+ C +Q++ S +I G + G ++ L +
Sbjct: 454 TNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGEERGGVYYLTDV 513
Query: 443 SSHLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKS 502
+ + NV + WH++LGHP+ +VLS L L +K S SC VC AK
Sbjct: 514 TP-AKIHTANVDSDQALWHQRLGHPSFSVLSSL----PLFSKTSSTVTSHSCDVCFRAKQ 568
Query: 503 KTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEV 562
FP ++ CF +IH DVWG + + YF+T +DDYSR W Y L KSEV
Sbjct: 569 TREVFPESINKTEECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEV 628
Query: 563 FSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLA 622
+ FL Y E QF +VK+ RS++G E+M Y + GI+ Q SC TPQQNG
Sbjct: 629 RQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMC--LSSYFRENGIIHQTSCVGTPQQNGRV 686
Query: 623 ERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
ERK+RH+L+V R+LL QAS+P +FW E++ T +
Sbjct: 687 ERKHRHILNVARALLFQASLPIKFWGESILTAAY 720
>At4g10690 retrotransposon like protein
Length = 1515
Score = 254 bits (649), Expect = 2e-67
Identities = 177/647 (27%), Positives = 309/647 (47%), Gaps = 85/647 (13%)
Query: 42 DDVSKAPTEKAALEEWEYKDAQIISWILSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDN 101
DD+ + L+ W D + +WI S+ + + + ++AQE+W L R +N+ +
Sbjct: 58 DDIQSEEANQEFLK-WTRIDQLVKAWIFGSLSEEALKVVIGLNSAQEVWLGLARRFNRFS 116
Query: 102 AAKRFQLELEIANYKQGNLYVQEFYSGFLNLWTEHSAIIHADVPKASLAAVQEVYNTSRR 161
+++ L+ + + + + S N+ + +I + + V
Sbjct: 117 TTRKYDLQKRLGTCSKAGKTMDAYLSEVKNICDQLDSIGFPVTEQEKIFGV--------- 167
Query: 162 DQFLMKLRPEFEVVRGAL---LNRNPVPSLDTCVGELLREEQRLLTQGTMS----HDAFI 214
L L E+E + + L+ P P D V +L + +L T S H AF
Sbjct: 168 ---LNGLGKEYESIATVIEHSLDVYPGPCFDDVVYKLTTFDDKLSTYTANSEVTPHLAFY 224
Query: 215 SEPVPVAYAAQS------------RGKGRDMRQVQCFTCKQFGHVARSCTAK----FCKY 258
++ +Y+++ RG+G + + F +QFG + + + C+
Sbjct: 225 TDK---SYSSRGNNNSRGGRYGNFRGRGSYSSRGRGFH-QQFGSGSNNGSGNGSKPTCQI 280
Query: 259 CKQNGHVIFDCPIRPPRRTQYPTQALHATTSSAAPPTITSASDGGSLQPEMIQQMVLAAL 318
C++ GH F C R + + + + A
Sbjct: 281 CRKYGHSAFKCYTR--------------------------------FEENYLPEDLPNAF 308
Query: 319 SNMGIHGKSSNVSRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGD 378
+ M + ++ S W DS A+ H+T +++ L N +Y G+ + + +G+ L IT +G
Sbjct: 309 AAMRVSDQNQASSHEWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGT 368
Query: 379 INSDF-------QDVLVSPGLASNLLSVGQLVDNN-CNVNFSRAGCLVQEQVSGKVIAKG 430
I + +DVLV PG+ +LLSV +L D+ C+ F +++++ + +++ +G
Sbjct: 369 IPLNISQGTLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQG 428
Query: 431 PKVGRLFPLQFISSHLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFKT-GLLGNKQVVCT 489
K L+ L+ + + + E WH++LGHPN VL HL KT ++ NK T
Sbjct: 429 NKHKGLYVLKDVPFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNK----T 484
Query: 490 ASISCPVCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSR 549
+S C C++ K LPF + +S E IH D+WG +P+ S ++Y+V FID+YSR
Sbjct: 485 SSNMCEACQMGKVCRLPFVASEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSR 544
Query: 550 FTWIYFLRSKSEVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQ 609
FTW Y L+ KS+ FS+F F VE Q+Q + +F+ + GGE++S++F +L GI
Sbjct: 545 FTWFYPLKLKSDFFSVFVLFQQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQL 604
Query: 610 RSCPNTPQQNGLAERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
SCP+TPQQNG+AER++R+L ++ SL+ + VP + WVEA T F
Sbjct: 605 ISCPHTPQQNGIAERRHRYLTELGLSLMFHSKVPHKLWVEAFFTSNF 651
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 252 bits (644), Expect = 9e-67
Identities = 195/694 (28%), Positives = 310/694 (44%), Gaps = 67/694 (9%)
Query: 15 RFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAA-LEEWEYKDAQIISWILSSID 73
R Y W R+ + +D P E W ++ + SW+L+S+
Sbjct: 82 RLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNSMVKSWLLNSVS 141
Query: 74 PQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQEFYSGFLNLW 133
PQ+ ++ + A ++W L +N N + + L EI + +QG + + E+Y+ LW
Sbjct: 142 PQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNLTQEIQDLRQGTMSLSEYYTLLKTLW 201
Query: 134 TEHSAIIHADVPKASLAAVQEVYNTSRRD--QFLMKLRPEFEVVRGALLNRNPVPSLDTC 191
+ + D P AV+ + +FL L + +VR ++ + +PSL
Sbjct: 202 DQLDSTEALDDPCTCGKAVRLYQKAEKAKIMKFLAGLNESYAIVRRQIIAKKALPSLAEV 261
Query: 192 VGELLREEQR-----------LLTQGTMSHDAFISEPVPVAYAAQSRGKGRDMRQVQCFT 240
L ++ + +SH S + Y KGR C
Sbjct: 262 YHILDQDNSQKGFFNVVAPPAAFQVSEVSHSPITSPEI--MYVQSGPNKGRPT----CSF 315
Query: 241 CKQFGHVARSCTAK------FCKYCKQNGH------VIFDCPIRPPRRT-QYPT------ 281
C + GH+A C K F K + V + P + T Q T
Sbjct: 316 CNRVGHIAERCYKKHGFPPGFTPKGKSSDKPPKPQAVAAQVTLSPDKMTGQLETLAGNFS 375
Query: 282 ----QALHATTSSAAPPTITSASDGGSLQPEMIQQMVL--------AALSNMGIHGKSSN 329
Q L A SS P I S S Q V + +GI S N
Sbjct: 376 PDQIQNLIALFSSQLQPQIVSPQTASSQHEASSSQSVAPSGILFSPSTYCFIGILAVSHN 435
Query: 330 V--SRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGD--INSDF-- 383
S W +DSGA++H++ + L + + + + G + I+ VG IN D
Sbjct: 436 SLSSDTWVIDSGATHHVSHDRKLFQTLDTSIVSF-VNLPTGPNVRISGVGTVLINKDIIL 494
Query: 384 QDVLVSPGLASNLLSVGQLV-DNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFI 442
Q+VL P NL+S+ L D V F + C +Q+ G + +G ++G L+ L
Sbjct: 495 QNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDTQ 554
Query: 443 SSHLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKS 502
S +S+ N + WH++LGHP+ + L L + +LG + S C VC LAK
Sbjct: 555 SPAISV---NAVVDVSVWHKRLGHPSFSRLDSLSE--VLGTTRHKNKKSAYCHVCHLAKQ 609
Query: 503 KTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEV 562
K L FPS + ++ FE++H DVWG + + YKYF+T +DD+SR TWIY L+SKS+V
Sbjct: 610 KKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDV 669
Query: 563 FSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLA 622
++F F+ VE Q+ VK RS++ E F E+ + KGI+S SCP TP+QN +
Sbjct: 670 LTVFPAFIDLVENQYDTRVKSVRSDNAKEL---AFTEFYKAKGIVSFHSCPETPEQNSVV 726
Query: 623 ERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
ERK++H+L+V R+L+ Q+++ +W + + T F
Sbjct: 727 ERKHQHILNVARALMFQSNMSLPYWGDCVLTAVF 760
>At4g28900 putative protein
Length = 1415
Score = 252 bits (643), Expect = 1e-66
Identities = 176/667 (26%), Positives = 305/667 (45%), Gaps = 89/667 (13%)
Query: 14 VRFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAALEE--------------WEY 59
++ + NY W+ QF ++ +L + + P ++ W
Sbjct: 19 LKLSTANYLLWKIQFETWLNNQRLLGFVTGANPCPNATRSIRNGDQVTEATNPDFLTWVQ 78
Query: 60 KDAQIISWILSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGN 119
D +I+ W+L S+ + ++ T++E+W L + YN+ +A+++ L+ + +
Sbjct: 79 NDQKIMGWLLGSLSEDALRSVYGLHTSREVWFSLAKKYNRVSASRKSDLQRRLNPVSKNE 138
Query: 120 LYVQEFYSGFLNLWTEHSAIIHADVPKASLAAVQEVYNTSRRDQFLMKLRPEFEVVRGAL 179
+ E+ + + + +I P + V N ++ L+ +++G++
Sbjct: 139 KSMLEYLNCVKQICDQLDSI---GCPVPENEKIFGVLNGLGQEYMLVST-----MIKGSM 190
Query: 180 LNRNPVPSLDTCVGELLREEQRLLTQGTMSHDAFISEPVPVAYAAQSRGKGRDMRQVQCF 239
+ P+ S + V +L+ + +L + + + Y + RG + +
Sbjct: 191 -DTYPM-SFEDVVFKLINFDDKLQNGQSGGNRGRNN------YTTKGRGFPQQISS---- 238
Query: 240 TCKQFGHVARSCTAKFCKYCKQNGHVIFDCPIRPPRRTQYPTQALHATTSSAAPPTITSA 299
G + S T C+ C + GH + C +R + Q+ + + AA
Sbjct: 239 -----GSPSDSGTRPTCQICNKYGHSAYKCW----KRFDHAFQSEDFSKAFAA------- 282
Query: 300 SDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLDSGASNHMTGSSEYLHNLHSYHG 359
M + + SN PW DSGA++H+T S+ L + Y G
Sbjct: 283 ---------------------MRVSDQKSN---PWVTDSGATSHITNSTSQLQSAQPYSG 318
Query: 360 NQQIQIADGNKLSITDVGDI-------NSDFQDVLVSPGLASNLLSVGQLV-DNNCNVNF 411
+ + + + L IT +G N +DVLV P + +LLSV +L D C + F
Sbjct: 319 EDSVIVGNSDFLPITHIGSAVLTSNQGNLPLRDVLVCPNITKSLLSVSKLTSDYPCVIEF 378
Query: 412 SRAGCLVQEQVSGKVIAKGPKVGRLFPLQFISSHLSLACNNVLNSYEDWHRKLGHPNSTV 471
G +V+++++ +++ KG + L+ L+ + S E WH +LGHPN V
Sbjct: 379 DSDGVIVKDKLTKQLLTKGTRHNDLYLLENPKFMACYSSRQQATSDEVWHMRLGHPNQDV 438
Query: 472 LSHLFKTGLLGNKQVVC--TASISCPVCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMS 529
L L + NK +V T+ C C++ K LPF S +S E +H D+WG +
Sbjct: 439 LQQLLR-----NKAIVISKTSHSLCDACQMGKICKLPFASSDFVSSRLLERVHCDLWGPA 493
Query: 530 PIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSMFKKFLTYVETQFQASVKIFRSNSG 589
P+ S ++Y+V FID+YSRFTW Y LR KS+ FS+F F VE Q Q + F+ + G
Sbjct: 494 PVVSSQGFRYYVIFIDNYSRFTWFYPLRLKSDFFSVFLTFQKMVENQCQQKIASFQCDGG 553
Query: 590 GEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLLLQASVPPRFWVE 649
GE++S++F +L GI SCP TPQQNG+AERK+RH+ ++ S++ Q VP WVE
Sbjct: 554 GEFISNQFVSHLAECGIRQLISCPYTPQQNGIAERKHRHITELGSSMMFQGKVPQFLWVE 613
Query: 650 ALSTVCF 656
A T F
Sbjct: 614 AFYTSNF 620
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 250 bits (639), Expect = 3e-66
Identities = 183/692 (26%), Positives = 308/692 (44%), Gaps = 70/692 (10%)
Query: 15 RFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAA-LEEWEYKDAQIISWILSSID 73
R NY W + + +D P E W ++ + SW+L+S+
Sbjct: 78 RLDETNYGDWSVAMLISLDAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVKSWLLNSVS 137
Query: 74 PQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQEFYSGFLNLW 133
PQ+ ++ + A ++W L +N N + + L EI +++QG L + E+Y+ LW
Sbjct: 138 PQIYRSILRMNDASDIWRDLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLW 197
Query: 134 TEHSAIIHADVPKASLAAV--QEVYNTSRRDQFLMKLRPEFEVVRGALLNRNPVPSLDTC 191
+ + D P A+ Q+ ++ +FL L + +VR ++ + +PSL
Sbjct: 198 DQLDSTEALDEPCTCGKAMRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPSLGEV 257
Query: 192 VGELLREEQRLLTQGTMSHDAFI---------SEPVPVAYAAQSRGKGRDMRQVQCFTCK 242
L ++ + ++ A S V Y KGR + C
Sbjct: 258 YHILDQDNSQQSFSNVVAPPAAFQVSEITQSPSMDPTVCYVQNGPNKGRPI----CSFYN 313
Query: 243 QFGHVARSCTAKFCKYCKQNGHVIFDCPIRPPRRTQYPTQALHATTSSAAPPTITSASDG 302
+ GH+A C Y K F + + Q P + L A + ++ + S
Sbjct: 314 RVGHIAERC------YKKHGFPPGFTPKGKAGEKLQKP-KPLAANVAESSEVNTSLESMV 366
Query: 303 GSLQPEMIQQMVLAALS-------------------NMGIHGKSSNVS------------ 331
G+L E +QQ + S N+GI S S
Sbjct: 367 GNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTYSFIGILTVARHTL 426
Query: 332 --RPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDI--NSDF--QD 385
W +DSGA++H++ +L + + + G + I+ VG + N D ++
Sbjct: 427 SSATWVIDSGATHHVSHDRSLFSSLDT-SVLSAVNLPTGPTVKISGVGTLKLNDDILLKN 485
Query: 386 VLVSPGLASNLLSVGQLVDN-NCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFISS 444
VL P NL+S+ L D+ V F + C +Q+ + G+++ +G +V L+ L
Sbjct: 486 VLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDVGDQ 545
Query: 445 HLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKT 504
+S+ N + WHR+LGH + L + + LG + S C VC LAK +
Sbjct: 546 SISV---NAVVDISMWHRRLGHASLQRLDAISDS--LGTTRHKNKGSDFCHVCHLAKQRK 600
Query: 505 LPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFS 564
L FP+ F+++H DVWG + + YKYF+T +DD+SR TW+Y L++KSEV +
Sbjct: 601 LSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLT 660
Query: 565 MFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 624
+F F+ VE Q++ VK RS++ E +F + KGI+S SCP TP+QN + ER
Sbjct: 661 VFPAFIQQVENQYKVKVKAVRSDNAPEL---KFTSFYAEKGIVSFHSCPETPEQNSVVER 717
Query: 625 KNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
K++H+L+V R+L+ Q+ VP W + + T F
Sbjct: 718 KHQHILNVARALMFQSQVPLSLWGDCVLTAVF 749
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 247 bits (631), Expect = 3e-65
Identities = 201/741 (27%), Positives = 328/741 (44%), Gaps = 116/741 (15%)
Query: 14 VRFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAAL--------------EEWEY 59
++ T NY W+ QF + KL ++ AP++ + E W
Sbjct: 19 LKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLYESWFC 78
Query: 60 KDAQIISWILSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLE--LEIANYKQ 117
D + SW+ ++ +++ ++ + ST++++W L +N+ + A+ F L L++ + K+
Sbjct: 79 TDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSSVAREFSLRQNLQLLSKKE 138
Query: 118 G--NLYVQEFYSGFLNLWTEHSAIIHADVPKASLAAVQEVYNTSRRDQFLMKLRPEFEVV 175
++Y +EF T A+ P + N RD P V+
Sbjct: 139 KPFSVYCREFK-------TICDALSSIGKPVDESMKIFGFLNGLGRDY-----DPITTVI 186
Query: 176 RGALLNRNPVPSLDTCVGELLREEQRLLTQ----GTMSHDAFI---SEPVPVAYAAQSRG 228
+ +L ++ P P+ + V E+ + +L + H AF SE Y +G
Sbjct: 187 QSSL-SKLPTPTFNDVVSEVQGFDSKLQSYEEAASVTPHLAFNIERSESGSPQYNPNQKG 245
Query: 229 KGRDMRQVQC--FTCKQFGHVARSCTAKF------CKYCKQNGHVIFDCPIRPPRRTQYP 280
+GR + ++ + G + + C+ C + GH C R Q
Sbjct: 246 RGRSGQNKGRGGYSTRGRGFSQHQSSPQVSGPRPVCQICGRTGHTALKCYNRFDNNYQAE 305
Query: 281 TQALHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLDSGA 340
QA T+ + D G + W DS A
Sbjct: 306 IQAFS---------TLRVSDDTG----------------------------KEWHPDSAA 328
Query: 341 SNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGD--INSD-----FQDVLVSPGLA 393
+ H+T S+ L + Y G+ + + DG L IT G I S +VLV P +
Sbjct: 329 TAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLNEVLVVPNIQ 388
Query: 394 SNLLSVGQLVDNN-CNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQ---FISSHLSLA 449
+LLSV +L D+ C V F + + + KV+ GP+ L+ L+ F++ + +
Sbjct: 389 KSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYVLENQEFVALYSNRQ 448
Query: 450 CNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLG-NKQVVCTASISCPVCKLAKSKTLPFP 508
C + E WH +LGH NS L HL + + NK S C C++ KS LPF
Sbjct: 449 C---AATEEVWHHRLGHANSKALQHLQNSKAIQINKS---RTSPVCEPCQMGKSSRLPFL 502
Query: 509 SGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSMFKK 568
R + + IH D+WG SP+ S+ KY+ F+DDYSR++W Y L +KSE S+F
Sbjct: 503 ISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFIS 562
Query: 569 FLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRH 628
F VE Q +K+F+S+ GGE++S++ + +L GI + SCP TPQQNGLAERK+RH
Sbjct: 563 FQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRH 622
Query: 629 LLDVTRSLLLQASVPPRFWVEALSTVCF*LIVFLLQLLNLILLSFVYLNFSLIIVI---- 684
L+++ S+L + P +FWVE+ T + ++N L S V N S +
Sbjct: 623 LVELGLSMLFHSHTPQKFWVESFFTANY--------IINR-LPSSVLKNLSPYEALFGEK 673
Query: 685 --YILLGVCVLSTYPCLKGIS 703
Y L V + YPCL+ ++
Sbjct: 674 PDYSSLRVFGSACYPCLRPLA 694
>At1g70010 hypothetical protein
Length = 1315
Score = 238 bits (606), Expect = 2e-62
Identities = 170/634 (26%), Positives = 296/634 (45%), Gaps = 56/634 (8%)
Query: 35 NKLWSHLDDVSKAPTEKAALEEWEYKDAQIISWILSSIDPQMINNLRSFSTAQEMWNYLK 94
NKL + K + + W ++ + SW+L+S+ ++ ++ F TA +W L
Sbjct: 9 NKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTAAAIWKDLY 68
Query: 95 RIYNQDNAAKRFQLELEIANYKQGNLYVQEFYSGFLNLWTEHSAIIHADVPKASLAAVQE 154
+++ + + ++L +I + +QGNL + +++ LW E +++ L +E
Sbjct: 69 TRFHKSSLPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVPRTVEDLLIERE 128
Query: 155 VYNTSRRDQFLMKLRPEFEVVRGALLNRNPVPSLDTCVGELLREEQRLLTQGTMSHDAFI 214
T+R FLM L ++ VR +L + +PSL V ++ +++ + +
Sbjct: 129 ---TNRVIDFLMGLNDCYDTVRSQILMKKTLPSLSE-VFNMIDQDETQRSARISTTPGMT 184
Query: 215 SEPVPVAYAAQSRGKGRDMRQVQ----CFTCKQFGHVARSCTAKFCKYCKQNGHVIFDCP 270
S PV+ + D Q + C C + GHV +C K++G +
Sbjct: 185 SSVFPVSNQSSQSALNGDTYQKKERPVCSYCSRPGHVEDTC-------YKKHG---YPTS 234
Query: 271 IRPPRRTQYPTQALHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNV 330
+ ++ P+ + +A S TS S G L IQQ+V S + S
Sbjct: 235 FKSKQKFVKPSISANAAIGSEEVVNNTSVST-GDLTTSQIQQLVSFLSSKL---QPPSTP 290
Query: 331 SRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDINSDFQDVLVSP 390
+P S+ + SS S H + + + DVL P
Sbjct: 291 VQPEVHSISVSSDPSSSSTVCPISGSVHLGRHLIL------------------NDVLFIP 332
Query: 391 GLASNLLSVGQLVDN-NCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFIS------ 443
NLLSV L + C + F C++Q+ ++ G +V L+ + S
Sbjct: 333 QFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIVDLDSLSHPGT 392
Query: 444 -SHLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKS 502
S +++A + S++ WH++LGHP+ L + + LL + C VC ++K
Sbjct: 393 DSSITVAS---VTSHDLWHKRLGHPSVQKLQPM--SSLLSFPKQKNNTDFHCRVCHISKQ 447
Query: 503 KTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEV 562
K LPF S +++S F++IH D WG + +H Y+YF+T +DDYSR TW+Y LR+KS+V
Sbjct: 448 KHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDV 507
Query: 563 FSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLA 622
++ F+T VE QF+ ++K RS++ E F ++ KGI+ SCP TPQQN +
Sbjct: 508 LTVIPTFVTMVENQFETTIKGVRSDNAPEL---NFTQFYHSKGIVPYHSCPETPQQNSVV 564
Query: 623 ERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
ERK++H+L+V RSL Q+ +P +W + + T +
Sbjct: 565 ERKHQHILNVARSLFFQSHIPISYWGDCILTAVY 598
>At1g44510 polyprotein, putative
Length = 1459
Score = 223 bits (567), Expect = 8e-58
Identities = 179/683 (26%), Positives = 301/683 (43%), Gaps = 90/683 (13%)
Query: 15 RFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAALEE----------WEYKDAQI 64
+ T NY W Q + G L +LD+ P E + W+ +D I
Sbjct: 32 KLTSTNYLMWSIQIHALLDGYDLAGYLDNSVVIPPETTTINSVVSANPSFTLWKRQDKLI 91
Query: 65 ISWILSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQE 124
S ++ +I P + + + + + ++W+ L Y + + QL +I +G + E
Sbjct: 92 FSALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGTKTIDE 151
Query: 125 FYSGFLNLWTEHSAIIHADVPKASLAAV--QEVYNTSRRDQFLMKLRPEFEVVRGALLNR 182
+ + + + A+ + + + + + L L E++ V + +
Sbjct: 152 Y--------------VQSHTTRLDQLAILGKPMEHEEQVEHILKGLPEEYKTVVDQIEGK 197
Query: 183 NPVPSLDTCVGELLREEQRLLTQGTMSHDAFISEPVPVAYAAQSRGKGRDMRQVQ----- 237
+ P++ L+ E +LL+ +F A A Q R + Q Q
Sbjct: 198 DNTPTITEIHERLINHESKLLSDEVPPSSSFPMS----ANAVQQRNFNNNCNQNQHKNRY 253
Query: 238 --------CFTCKQFGHVARSCTAKF------CKYCKQNGHVIFDCPIRPPRRTQYPTQA 283
T Q +S F C+ C GH CP Q
Sbjct: 254 QGNTHNNNTNTNSQPSTYNKSGQRTFKPYLGKCQICSVQGHSARRCP-------QLQAMQ 306
Query: 284 LHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLDSGASNH 343
L A++S+ +P T QP +N+ I S + PW LDSGA++H
Sbjct: 307 LPASSSAHSPFT--------PWQPR----------ANLAI--GSPYAANPWLLDSGATHH 346
Query: 344 MTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDI-----NSD--FQDVLVSPGLASNL 396
+T L Y+G + + IADG L+I G N D VL P + NL
Sbjct: 347 ITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLPSQNRDLALHKVLYVPDIRKNL 406
Query: 397 LSVGQLVD-NNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLF--PLQFISSHLSLACNNV 453
+SV +L + N +V F A V++ +G ++ +G L+ P+ + +
Sbjct: 407 ISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTNPPATALFTSPSP 466
Query: 454 LNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKTLPFPSGAHR 513
+ WH +LGHP++++L+ L L V + SC C + KS LPF + +
Sbjct: 467 KTTLSSWHSRLGHPSASILNTLLSKFSL-PVSVASSNKTSCSDCLINKSHKLPFATSSIH 525
Query: 514 ASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSMFKKFLTYV 573
+S+ E I +DVW SPI SH +YKY++ +D Y+R+TW+Y L+ KS+V + F F V
Sbjct: 526 SSSPLEYIFTDVW-TSPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALV 584
Query: 574 ETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVT 633
E +FQA ++ S++GGE+++ +++L GI S P+TP+ NGL+ERK+RH+++
Sbjct: 585 ENRFQAKIRTLYSDNGGEFIA--LRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETG 642
Query: 634 RSLLLQASVPPRFWVEALSTVCF 656
+LL QASVP +W A +T +
Sbjct: 643 LTLLTQASVPREYWTYAFATAVY 665
>At4g16870 retrotransposon like protein
Length = 1474
Score = 219 bits (557), Expect = 1e-56
Identities = 183/676 (27%), Positives = 303/676 (44%), Gaps = 82/676 (12%)
Query: 15 RFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAALEE----------WEYKDAQI 64
+ T NY W Q + G +L HLD + P W+ +D I
Sbjct: 33 KLTSNNYLMWSLQIHALLDGYELAGHLDGSIETPAPTLTTNNVVSANPQYTLWKRQDRLI 92
Query: 65 ISWILSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQE 124
S ++ +I P + + + A ++W L Y + + QL +I K+G + E
Sbjct: 93 FSALIGAISPPVQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQLKKGTKTIDE 152
Query: 125 FYSGFLNLWTEHSAIIHADVPKASLAAVQEVYNTSRRDQFLMKLRPEFEVVRGALLNRNP 184
+ + H + + + + + ++ L L +++ V + ++
Sbjct: 153 Y------------VLSHTTLLDQLAILGKPMEHEEQVERILEGLPEDYKTVVDQIEGKDN 200
Query: 185 VPSLDTCVGELLREEQRLLTQGTMSHDAFISEPVPVAYAAQ-----SRGKGRDMRQVQCF 239
PS+ L+ E +LL+ +S S P+ A Q +R ++ + Q
Sbjct: 201 TPSITEIHERLINHEAKLLSTAALSSS---SLPMSANVAQQRHHNNNRNNNQNKNRTQGN 257
Query: 240 TCK---QFGHVARSCTAKF------CKYCKQNGHVIFDCPIRPPRRTQYPTQALHATTSS 290
T Q +S F C+ C GH CP QA+ ++SS
Sbjct: 258 TYTNNWQPSANNKSGQRPFKPYLGKCQICNVQGHSARRCP---------QLQAMQPSSSS 308
Query: 291 AAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLDSGASNHMTGSSEY 350
SAS QP A MG ++N W LDSGA++H+T
Sbjct: 309 -------SASTFTPWQPR--------ANLAMGAPYTANN----WLLDSGATHHITSDLNA 349
Query: 351 LHNLHSYHGNQQIQIADGNKLSITDVGD--INSDFQD-----VLVSPGLASNLLSVGQLV 403
L LH + + IADG L IT G + S+ +D VL P + NL+SV +L
Sbjct: 350 L-ALHQPYNGDDVMIADGTSLKITKTGSTFLPSNARDLTLNKVLYVPDIQKNLVSVYRLC 408
Query: 404 D-NNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLF--PLQFISSHLSLACNNVLNSYEDW 460
+ N +V F A V++ +G ++ +G L+ P+ + + + W
Sbjct: 409 NTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDELYEWPVTNPKATALFTTPSPKTTLSSW 468
Query: 461 HRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKTLPFPSGAHRASNCFEM 520
H +LGHP+S++L+ L L V + ++C C + KS LPF + ++++ E
Sbjct: 469 HSRLGHPSSSILNTLISKFSL-PVSVSASNKLACSDCFINKSHKLPFSISSIKSTSPLEY 527
Query: 521 IHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSMFKKFLTYVETQFQAS 580
I SDVW MSPI S +YKY++ +D ++R+TW+Y L+ KS+V S F F VE +FQA
Sbjct: 528 IFSDVW-MSPILSPDNYKYYLVLVDHHTRYTWLYPLQQKSQVKSTFIAFKALVENRFQAK 586
Query: 581 VKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLLLQA 640
++ S++GGE+++ +E+L GI S P+TP+ NGL+ERK+RH+++ +LL QA
Sbjct: 587 IRTLYSDNGGEFIA--LREFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQA 644
Query: 641 SVPPRFWVEALSTVCF 656
SVP +W A + +
Sbjct: 645 SVPREYWPYAFAAAVY 660
>At1g26990 polyprotein, putative
Length = 1436
Score = 205 bits (522), Expect = 1e-52
Identities = 119/348 (34%), Positives = 183/348 (52%), Gaps = 17/348 (4%)
Query: 332 RPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDINS----DFQDVL 387
R W +DSGAS+H+T H + +++ +G+ + I G I +VL
Sbjct: 419 RAWVIDSGASHHVTHERNLYHTYKALD-RTFVRLPNGHTVKIEGTGFIQLTDALSLHNVL 477
Query: 388 VSPGLASNLLSVGQLVDN-NCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFISSHL 446
P NLLSV L V+F+ C++Q ++ KG +VG L+ L S +
Sbjct: 478 FIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLDKSLV 537
Query: 447 SLA-------CNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKL 499
++ C++V N E WH++LGHP+ + L +L KQ + S C VC L
Sbjct: 538 DVSSFPGKSVCSSVKNESEMWHKRLGHPSFAKIDTLSDVLMLP-KQKINKDSSHCHVCHL 596
Query: 500 AKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSK 559
+K K LPF S H FE++H D WG + + Y+YF+T +DD+SR TWIY L+ K
Sbjct: 597 SKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYLLKQK 656
Query: 560 SEVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQN 619
S+V ++F FL VETQ+ V RS++ E +F E +GI + CP TP+QN
Sbjct: 657 SDVLTVFPSFLKMVETQYHTKVCSVRSDNAHEL---KFNELFAKEGIKADHPCPETPEQN 713
Query: 620 GLAERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF*LIVFLLQLLN 667
+ ERK++HLL+V R+L+ Q+ +P +W + + T F + L ++N
Sbjct: 714 FVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVIN 761
Score = 60.8 bits (146), Expect = 5e-09
Identities = 62/242 (25%), Positives = 103/242 (41%), Gaps = 34/242 (14%)
Query: 89 MWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQEFYSGFLNLWTEHSAIIHADVPKAS 148
+W+ + N N +R+QLE + +QG L + +++ LW + + V K
Sbjct: 116 IWSRCNSMVN--NLPRRYQLEQAVMTLQQGKLDLSTYFTKKKTLWEQLANTKSRSVKKCD 173
Query: 149 LAAVQEVYN---TSRRDQFLMKLRPEFEVVRGALLNRNPVPSLDTCVGELLREE-QRLLT 204
V+E+ TSR QFLM L +F +R + N P P L+ L ++E QRL+
Sbjct: 174 CDQVKELLEEAETSRVIQFLMGLSDDFNTIRSQIFNMKPRPGLNEIYNMLDQDESQRLVG 233
Query: 205 QGTMSHDAFISEPVPVAYAAQSRGKGRDMRQV----------QCFTCKQFGHVARSCTAK 254
S + P P A+ Q++G D + +C C + GH C
Sbjct: 234 FAAKS----VPSPSPAAF--QTQGVLNDQNTILLAQGNFKKPKCTHCNRIGHTVDKC--- 284
Query: 255 FCKYCKQNGHVIFDCPIRPPRRTQYPTQALHAT--TSSAAPPTITSASDGGSLQPEMIQQ 312
+ + GH R T + L +T + APPT+ SA+ ++ + IQQ
Sbjct: 285 YKVHGYPPGHP------RAKENTYVGSTNLASTDQIETQAPPTM-SATGHETMSNDHIQQ 337
Query: 313 MV 314
++
Sbjct: 338 LI 339
>At3g61330 copia-type polyprotein
Length = 1352
Score = 199 bits (506), Expect = 9e-51
Identities = 135/451 (29%), Positives = 206/451 (44%), Gaps = 63/451 (13%)
Query: 223 AAQSRGKGR-----DMRQVQCFTCKQFGHVARSCTAKFCKYCKQNGHVIFDCPIRPPRRT 277
+++ RGKG D V+C+ C +FGH A C A K ++ H +
Sbjct: 261 SSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKAHYV----------- 309
Query: 278 QYPTQALHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLD 337
E IQ+ + +++ + N W+LD
Sbjct: 310 -----------------------------EEKIQEEDMLLMASYKKDEQKEN--HKWYLD 338
Query: 338 SGASNHMTGSSEYLHNL-HSYHGNQQIQIADGNKLSITDVGDI-----NSDFQ---DVLV 388
SGASNHM G L S GN + + D +K+ + G+I N D Q +V
Sbjct: 339 SGASNHMCGRKSMFAELDESVRGN--VALGDESKMEVKGKGNILIRLKNGDHQFISNVYY 396
Query: 389 SPGLASNLLSVGQLVDNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFISSHLSL 448
P + +N+LS+GQL++ ++ +++Q S + R+F L +
Sbjct: 397 IPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQ- 455
Query: 449 ACNNVLNSYEDW--HRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKTLP 506
C + E W H + GH N L L + ++ + + C C L K +
Sbjct: 456 -CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMS 514
Query: 507 FPS-GAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSM 565
FP + RA E+IH+DV G S YF+ FIDD+SR TW+YFL+ KSEVF +
Sbjct: 515 FPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEI 574
Query: 566 FKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERK 625
FKKF +VE + +K RS+ GGE+ S EF +Y + GI Q + P +PQQNG+ ERK
Sbjct: 575 FKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERK 634
Query: 626 NRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
NR +L++ RS+L +P W EA++ +
Sbjct: 635 NRTILEMARSMLKSKRLPKELWAEAVACAVY 665
Score = 39.7 bits (91), Expect = 0.012
Identities = 27/129 (20%), Positives = 55/129 (41%), Gaps = 14/129 (10%)
Query: 17 TGKNYPAWEFQFRMYVKGNKLWSHLD--------DVSKAPTEKAALEEWEYKDAQIISWI 68
T NY W + + + + +W ++ + S + T+K L + +D + + I
Sbjct: 14 TKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLI 73
Query: 69 LSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQL-----ELEIANYKQGNLYVQ 123
+D + ++A+E W L+ Y + K+ +L E E K+G L V
Sbjct: 74 YQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGEL-VS 132
Query: 124 EFYSGFLNL 132
+++S L +
Sbjct: 133 DYFSRVLTV 141
>At1g48710 hypothetical protein
Length = 1352
Score = 199 bits (505), Expect = 1e-50
Identities = 135/451 (29%), Positives = 207/451 (44%), Gaps = 63/451 (13%)
Query: 223 AAQSRGKGR-----DMRQVQCFTCKQFGHVARSCTAKFCKYCKQNGHVIFDCPIRPPRRT 277
+++ RGKG D V+C+ C +FGH A C A K ++ + +
Sbjct: 261 SSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYV----------- 309
Query: 278 QYPTQALHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLD 337
E IQ+ + +++ + N W+LD
Sbjct: 310 -----------------------------EEKIQEEDMLLMASYKKDEQEEN--HKWYLD 338
Query: 338 SGASNHMTGSSEYLHNL-HSYHGNQQIQIADGNKLSITDVGDI-----NSDFQ---DVLV 388
SGASNHM G L S GN + + D +K+ + G+I N D Q +V
Sbjct: 339 SGASNHMCGRKSMFAELDESVRGN--VALGDESKMEVKGKGNILIRLKNGDHQFISNVYY 396
Query: 389 SPGLASNLLSVGQLVDNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFISSHLSL 448
P + +N+LS+GQL++ ++ +++Q S + R+F L +
Sbjct: 397 IPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQ- 455
Query: 449 ACNNVLNSYEDW--HRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKTLP 506
C + E W H + GH N L L + ++ + + C C L K +
Sbjct: 456 -CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMS 514
Query: 507 FPS-GAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSM 565
FP + RA E+IH+DV G S YF+ FIDD+SR TW+YFL+ KSEVF +
Sbjct: 515 FPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEI 574
Query: 566 FKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERK 625
FKKF +VE + +K RS+ GGE+ S EF +Y + GI Q + P +PQQNG+AERK
Sbjct: 575 FKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERK 634
Query: 626 NRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
NR +L++ RS+L +P W EA++ +
Sbjct: 635 NRTILEMARSMLKSKRLPKELWAEAVACAVY 665
Score = 39.7 bits (91), Expect = 0.012
Identities = 27/129 (20%), Positives = 55/129 (41%), Gaps = 14/129 (10%)
Query: 17 TGKNYPAWEFQFRMYVKGNKLWSHLD--------DVSKAPTEKAALEEWEYKDAQIISWI 68
T NY W + + + + +W ++ + S + T+K L + +D + + I
Sbjct: 14 TKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLI 73
Query: 69 LSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQL-----ELEIANYKQGNLYVQ 123
+D + ++A+E W L+ Y + K+ +L E E K+G L V
Sbjct: 74 YQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGEL-VS 132
Query: 124 EFYSGFLNL 132
+++S L +
Sbjct: 133 DYFSRVLTV 141
>At1g58140 hypothetical protein
Length = 1320
Score = 198 bits (503), Expect = 2e-50
Identities = 135/451 (29%), Positives = 207/451 (44%), Gaps = 63/451 (13%)
Query: 223 AAQSRGKGR-----DMRQVQCFTCKQFGHVARSCTAKFCKYCKQNGHVIFDCPIRPPRRT 277
+++ RGKG D V+C+ C +FGH A C A K ++ + +
Sbjct: 261 SSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYV----------- 309
Query: 278 QYPTQALHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLD 337
E IQ+ + +++ + N W+LD
Sbjct: 310 -----------------------------EEKIQEEDMLLMASYKKDEQEEN--HKWYLD 338
Query: 338 SGASNHMTGSSEYLHNL-HSYHGNQQIQIADGNKLSITDVGDI-----NSDFQ---DVLV 388
SGASNHM G L S GN + + D +K+ + G+I N D Q +V
Sbjct: 339 SGASNHMCGRKSMFAELDESVRGN--VALGDESKMEVKGKGNILIRLKNGDHQFISNVYY 396
Query: 389 SPGLASNLLSVGQLVDNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFISSHLSL 448
P + +N+LS+GQL++ ++ +++Q S + R+F L +
Sbjct: 397 IPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQ- 455
Query: 449 ACNNVLNSYEDW--HRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKTLP 506
C + E W H + GH N L L + ++ + + C C L K +
Sbjct: 456 -CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMS 514
Query: 507 FPS-GAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSM 565
FP + RA E+IH+DV G S YF+ FIDD+SR TW+YFL+ KSEVF +
Sbjct: 515 FPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEI 574
Query: 566 FKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERK 625
FKKF +VE + +K RS+ GGE+ S EF +Y + GI Q + P +PQQNG+AERK
Sbjct: 575 FKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERK 634
Query: 626 NRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
NR +L++ RS+L +P W EA++ +
Sbjct: 635 NRTILEMARSMLKSKRLPKELWAEAVACAVY 665
Score = 39.7 bits (91), Expect = 0.012
Identities = 27/129 (20%), Positives = 55/129 (41%), Gaps = 14/129 (10%)
Query: 17 TGKNYPAWEFQFRMYVKGNKLWSHLD--------DVSKAPTEKAALEEWEYKDAQIISWI 68
T NY W + + + + +W ++ + S + T+K L + +D + + I
Sbjct: 14 TKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLI 73
Query: 69 LSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQL-----ELEIANYKQGNLYVQ 123
+D + ++A+E W L+ Y + K+ +L E E K+G L V
Sbjct: 74 YQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGEL-VS 132
Query: 124 EFYSGFLNL 132
+++S L +
Sbjct: 133 DYFSRVLTV 141
>At3g45520 copia-like polyprotein
Length = 1363
Score = 196 bits (497), Expect = 1e-49
Identities = 163/619 (26%), Positives = 279/619 (44%), Gaps = 53/619 (8%)
Query: 50 EKAALEEWEYKDAQIISWILSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLE 109
E+ +E +E K + S I+ S+ +++ ++ ++A M L R+Y R L+
Sbjct: 60 EREKMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLK 119
Query: 110 LEIANYKQG-NLYVQEFYSGFLNLWT--EHSAIIHADVPKASLAAVQEVYNTSRRDQFLM 166
++ ++K NL ++ FL++ E+ ++ +D +A L LM
Sbjct: 120 QKLYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAIL--------------LLM 165
Query: 167 KLRPEFEVVRGALL--NRNPVPSLDTCVGELLREEQRLLTQGTMSHDAF-ISEPVPVAYA 223
L F+ ++ L + V SLD + E L G++ +E + V
Sbjct: 166 SLPKPFDQLKDTLKYSSGKTVLSLDEVAAAIYSRE---LEFGSVKKSIKGQAEGLYVKDK 222
Query: 224 AQSRGKGRDMRQVQCFTCKQFGHVARSCTAKFCKYCKQNGHVIFDCPIRPPRRTQYPTQA 283
A++RG+ K G ++S + + C C ++GH+ CP + + Q+ Q
Sbjct: 223 AENRGRSEQKD-------KGKGKRSKSKSKRGCWICGEDGHLKSTCPNK--NKPQFKNQG 273
Query: 284 LHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLDSGASNH 343
+ SS + +G E V ALS+ IH + W +D+G H
Sbjct: 274 SNKGESSGGKGNLV---EGSVNFVESAGMFVSEALSSTDIH-----LEDEWIMDTGCIYH 325
Query: 344 MTGSSEYLHNLHSYHG------NQQIQIADG-NKLSITDVGDINSDFQDVLVSPGLASNL 396
MT E+L + G N+ I G + I + + Q+V P + NL
Sbjct: 326 MTHKREWLEDFDEEAGGSVRMGNKSISRVKGVGTVRIVNDNGLTVTLQNVRYIPDMDRNL 385
Query: 397 LSVGQLVDNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFI-SSHLSLACNNVLN 455
LS+G F +++ + +V+ +G + L+ L ++ SLA +
Sbjct: 386 LSLGTF--EKAGHKFESENGMLRIKSGNQVLLEGRRYDTLYILHGKPATDESLAVARAND 443
Query: 456 SYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKTLPFPSGAHRAS 515
WHR+L H + +S L K G L K+V + +C C ++K + F H
Sbjct: 444 DTVLWHRRLCHMSQKNMSLLIKKGFLDKKKV--SMLDTCEDCIYGRAKKIGFNLAQHDTK 501
Query: 516 NCFEMIHSDVWGMSPIA-SHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSMFKKFLTYVE 574
E +HSD+WG + S + +YF++FIDDY+R W+YFL++K E F F +++ VE
Sbjct: 502 KKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVE 561
Query: 575 TQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTR 634
Q VK R+++G E+ + F + + KG R+C TPQQNG+ ER NR +++ R
Sbjct: 562 NQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQRHRTCAYTPQQNGVVERMNRTIMEKVR 621
Query: 635 SLLLQASVPPRFWVEALST 653
S+L + +P RFW EA T
Sbjct: 622 SMLCDSGLPKRFWAEATHT 640
>At1g47650 hypothetical protein
Length = 1409
Score = 195 bits (495), Expect = 2e-49
Identities = 113/341 (33%), Positives = 184/341 (53%), Gaps = 14/341 (4%)
Query: 321 MGIHGKSSNVSRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDI- 379
+G K + +DSGA +H++ NL + + + + G + I+ VG +
Sbjct: 319 LGFTPKGKGGDKSQVIDSGAIHHVSHDKSLFLNLDTSVVSA-VNLPAGPTVRISGVGTLR 377
Query: 380 -NSDF--QDVLVSPGLASNLLSVGQLVDN-NCNVNFSRAGCLVQEQVSGKVIAKGPKVGR 435
N D +++L P NL+S+ L D+ V F + C +Q+ + +++ +G ++
Sbjct: 378 LNDDILLKNILFIPEFRLNLISISSLTDDIGSRVIFDKTSCEIQDPIKARMLGQGRRIAN 437
Query: 436 LFPLQFISSHLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCP 495
L+ L +S+ N + WHR+LGH + L + + LG + S C
Sbjct: 438 LYVLDIEDPIVSV---NAVVDISMWHRRLGHASLQRLDVISDS--LGTTKPKNKGSDYCH 492
Query: 496 VCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYF 555
VC LAK + LPFPS + F+++H D+WG + + YKYF+T +DD+SR TWIY
Sbjct: 493 VCHLAKQRKLPFPSQNKVCNEIFDLLHIDIWGPFSVETVDGYKYFLTIVDDHSRATWIYL 552
Query: 556 LRSKSEVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNT 615
LR+KSEV ++F F+ VE Q++ VK RS++ E +F Q KGI+S SCP T
Sbjct: 553 LRNKSEVLTVFPAFIEQVENQYKVRVKAVRSDNAPEL---KFTSLYQQKGIVSFHSCPET 609
Query: 616 PQQNGLAERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
P+QN + ERK++H+L+V+R+L+ Q+ VP W + + T F
Sbjct: 610 PEQNLVVERKHQHILNVSRALMFQSQVPLSLWGDCVLTAVF 650
Score = 69.3 bits (168), Expect = 1e-11
Identities = 52/243 (21%), Positives = 93/243 (37%), Gaps = 12/243 (4%)
Query: 15 RFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAA-LEEWEYKDAQIISWILSSID 73
R NY W + + +D P E W + + SW+L+S+
Sbjct: 81 RLDETNYGDWNVAMLISLDAKNKSGFIDGTLPRPLESDKNFRLWSRCKSMVKSWLLNSVS 140
Query: 74 PQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQEFYSGFLNLW 133
PQ+ ++ + A ++W L +N N + + L EI +++QG L + E+Y+ LW
Sbjct: 141 PQIYRSILRMNDASDIWRDLHSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLW 200
Query: 134 TEHSAIIHADVP--KASLAAVQEVYNTSRRDQFLMKLRPEFEVVRGALLNRNPVPSLDTC 191
+ + D P +Q+ ++ + L L + ++R ++ + +PS
Sbjct: 201 DQLESTEELDDPCICGKAMRLQQKAEQAKIVKLLAGLNDSYAIIRRQIIAKKALPS---- 256
Query: 192 VGELLREEQRLLTQGTMSHDAFISEPVPVAYAAQSRGKGRDMRQVQCFTCKQFGHVARSC 251
L E +L Q S F + P A S V + GH+A C
Sbjct: 257 ----LAEVYHILDQDN-SQQGFSNVVAPPAAFQVSEAMMATNNDVNMLCSEWVGHIAERC 311
Query: 252 TAK 254
K
Sbjct: 312 YKK 314
>At4g10460 putative retrotransposon
Length = 1230
Score = 190 bits (483), Expect = 4e-48
Identities = 167/618 (27%), Positives = 279/618 (45%), Gaps = 72/618 (11%)
Query: 50 EKAALEEWEYKDAQIISWILSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLE 109
+K AL E + + A+ S I+ S+ Q++ + TA M L ++Y R L+
Sbjct: 60 DKEALMEEKRQKAR--STIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLK 117
Query: 110 LEIANYK-QGNLYVQEFYSGFLNLWT--EHSAIIHADVPKASLAAVQEVYNTSRRDQFLM 166
++ +YK Q NL V+ FL L E++ ++ +D +A L LM
Sbjct: 118 QKLYSYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAIL--------------LLM 163
Query: 167 KLRPEFEVVRGALL--NRNPVPSLDTCVGELLREEQRLLTQGTMSHDAFISEPVPVAYAA 224
L +F+ ++ L + S+D V + +E L + +E + V
Sbjct: 164 SLPKQFDQLKDTLKYGSGRTTLSVDEVVAAIYSKELELGSNKKSIRGQ--AEGLYVKDKP 221
Query: 225 QSRGKGRDMRQVQCFTCKQFGHVARSCTA----KFCKYCKQNGHVIFDCPIRPPRRTQYP 280
++RG K+ G+ RS + K C C + GH CP + ++ +
Sbjct: 222 ETRGMSEQ---------KEKGNKGRSRSRSKGWKGCWICGEEGHFKTSCPNKGKQQNKGK 272
Query: 281 TQALHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGIHGKSSNVSRPWFLDSGA 340
QA + +A TS G + +H N+ W +D+G
Sbjct: 273 DQASGSKGEAATIKGNTSEGSGYYVSE--------------ALHSTDVNLGNEWVMDTGC 318
Query: 341 SNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDINSDFQDVLVSPGLASNLLSVG 400
+ HMT E+ L G + GNK + S F+ V P + NLLS+G
Sbjct: 319 NYHMTHKKEWFEELSEDAGGT---VRMGNKST--------SKFR-VKYIPDMDRNLLSMG 366
Query: 401 QLVDNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQF---ISSHLSLACNNVLNSY 457
L ++ + S+ G LV ++ + + + G + +L+ LQ +S +++ N +
Sbjct: 367 TLEEHGYSFE-SKNGVLVVKEGT-RTLLIGSRHEKLYLLQGKPEVSHSMTVERRN--DDT 422
Query: 458 EDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKTLPFPSGAHRASNC 517
WHR+LGH + + L K G L K+V + C C K++ L F H +
Sbjct: 423 VLWHRRLGHISQKNMDILVKKGYLDGKKV--SKLELCEDCIYGKARRLSFVVATHNTEDK 480
Query: 518 FEMIHSDVWGMSPIA-SHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSMFKKFLTYVETQ 576
+HSD+WG + S +YF++FID YSR TW+YFL+ K E F F ++ VE Q
Sbjct: 481 LNYVHSDLWGAPSVPLSLGKCQYFISFIDVYSRKTWVYFLKHKDEAFGTFAEWSVMVENQ 540
Query: 577 FQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSL 636
+KI R ++G E+ + +F ++ + KGI+ ++C TPQQNG+AER N +++ R +
Sbjct: 541 TGRKIKILRIDNGLEFCNQQFNDFCKEKGIVRHQTCAYTPQQNGVAERMNHTIMEKVRRM 600
Query: 637 LLQASVPPRFWVEALSTV 654
L + +P FW EA +TV
Sbjct: 601 LSYSGLPKTFWAEATNTV 618
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.338 0.147 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,206,810
Number of Sequences: 26719
Number of extensions: 1082260
Number of successful extensions: 4621
Number of sequences better than 10.0: 138
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4030
Number of HSP's gapped (non-prelim): 322
length of query: 1343
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1232
effective length of database: 8,352,787
effective search space: 10290633584
effective search space used: 10290633584
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC144731.14