BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144730.5 + phase: 0 /pseudo
(146 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g28970 putative protein 51 2e-07
At1g36090 hypothetical protein 51 2e-07
At4g38180 unknown protein (At4g38180) 50 3e-07
At4g09380 putative protein 50 4e-07
At3g43050 putative protein 49 7e-07
At3g47310 putative protein 48 2e-06
At1g52520 F6D8.26 47 3e-06
At4g19990 putative protein 47 5e-06
At4g15090 unknown protein 45 1e-05
At1g80010 hypothetical protein 45 2e-05
At1g44840 hypothetical protein 44 2e-05
At1g33460 mutator transposase MUDRA, putative 44 2e-05
At3g22170 far-red impaired response protein, putative 43 5e-05
At4g08680 putative MuDR-A-like transposon protein 42 9e-05
At4g08610 predicted transposon protein 42 9e-05
At1g76320 putative phytochrome A signaling protein 42 9e-05
At2g12720 putative protein 42 1e-04
At4g04140 putative transposon protein 41 2e-04
At1g35060 hypothetical protein 41 2e-04
At5g18960 FAR1 - like protein 40 3e-04
>At4g28970 putative protein
Length = 914
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 27 YSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPKVIVTDRDMSLMKEVANVFPESYAMN 86
Y + FG EK+ +++W L+ L+ + + + V ++DR S+ K V V+P +
Sbjct: 439 YPLAFGIIDSEKDVSWIWFLEKLKTVYSDVPGL--VFISDRHQSIKKAVKTVYPNALHAA 496
Query: 87 CYFHVQANVKQRCVLDCKYPLGKKDGKEVKPRD 119
C +H+ N++ R +D KDG VK RD
Sbjct: 497 CIWHLCQNMRDRVTID-------KDGAAVKFRD 522
>At1g36090 hypothetical protein
Length = 645
Score = 51.2 bits (121), Expect = 2e-07
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 11/94 (11%)
Query: 27 YSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPKVI-VTDRDMSLMKEVANVFPESYAM 85
Y + FG EK+ +++W L+ KL T ++P+++ ++DR S+ K V V+P +
Sbjct: 399 YPLAFGIIDSEKDVSWIWFLE---KLKTVYSDVPRLVFISDRHQSIKKAVKTVYPNALHA 455
Query: 86 NCYFHVQANVKQRCVLDCKYPLGKKDGKEVKPRD 119
C +H+ N++ R +D KDG VK RD
Sbjct: 456 ACIWHLCQNMRDRVKID-------KDGAAVKFRD 482
>At4g38180 unknown protein (At4g38180)
Length = 788
Score = 50.4 bits (119), Expect = 3e-07
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 2 DSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPK 61
D+TY++N Y++P GV G F +E E +FVW+ L + P
Sbjct: 303 DTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTW--LAAMSAHPPV 360
Query: 62 VIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQRCV-LDCKYPLGKKD-GKEVKPRD 119
I TD D + + +VFP + C +H+ +++ + K+P + D K V +
Sbjct: 361 SITTDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTE 420
Query: 120 VVNKIMRAWKSMVE 133
V R W S+++
Sbjct: 421 SVEDFERCWFSLLD 434
>At4g09380 putative protein
Length = 960
Score = 50.1 bits (118), Expect = 4e-07
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 27 YSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPKVIVTDRDMSLMKEVANVFPESYAMN 86
Y + FG EK+ +++W L+ L+ + + + V ++DR S+ K V V+P +
Sbjct: 439 YPLAFGIIDSEKDVSWIWFLENLKTVYSDVPGL--VFISDRHQSIKKAVKTVYPNALHAA 496
Query: 87 CYFHVQANVKQRCVLDCKYPLGKKDGKEVKPRD 119
C +H+ N++ R +D KDG VK RD
Sbjct: 497 CIWHLCQNMRDRVKID-------KDGAAVKFRD 522
>At3g43050 putative protein
Length = 608
Score = 49.3 bits (116), Expect = 7e-07
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 27 YSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPKVIVTDRDMSLMKEVANVFPESYAMN 86
Y + FG EK+ ++ W + L+ ++ + V V+DR+ SLMK ++P S
Sbjct: 363 YPIDFGVLDGEKDVSWSWFFEKLKSVIPDSSEL--VFVSDRNQSLMKSQRELYPLSQHGC 420
Query: 87 CYFHVQANVKQRCVLDCKYPLGKK 110
C +H+ NVK C K +GKK
Sbjct: 421 CIYHLCQNVKGACNYSKKKVVGKK 444
>At3g47310 putative protein
Length = 735
Score = 48.1 bits (113), Expect = 2e-06
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 27 YSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPKVIVTDRDMSLMKEVANVFPESYAMN 86
Y + FG E + +++W L+ L+ + + + V ++DR S+ K V V+P +
Sbjct: 388 YPLAFGIIDSENDVSWIWFLEKLKTVYSDVPGL--VFISDRHQSIKKVVKTVYPNALHAA 445
Query: 87 CYFHVQANVKQRCVLDCKYPLGKKDGKEVKPRD 119
C +H+ N++ R +D KDG VK RD
Sbjct: 446 CIWHLCQNMRDRVKID-------KDGAAVKFRD 471
>At1g52520 F6D8.26
Length = 703
Score = 47.4 bits (111), Expect = 3e-06
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 1 MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMP 60
+DS+Y + +++P+ GV T + GF E E++ W+LK+ L+ P
Sbjct: 300 IDSSYISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVW---LSVMKRSP 356
Query: 61 KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQR 98
+ IVTDR L ++ VFP S+ H+ + ++
Sbjct: 357 QTIVTDRCKPLEAAISQVFPRSHQRFSLTHIMRKIPEK 394
>At4g19990 putative protein
Length = 672
Score = 46.6 bits (109), Expect = 5e-06
Identities = 29/90 (32%), Positives = 45/90 (49%), Gaps = 5/90 (5%)
Query: 1 MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFE-THEKEENFVWVLKMLRKLLTSKMNM 59
+D+T+ N YK+P+ GV +GFG T E + FVW+ + K +
Sbjct: 209 IDTTFIKNEYKLPLVAFTGVNHHGQFLLLGFGLLLTDESKSGFVWLFRAWLKAMHGCR-- 266
Query: 60 PKVIVTDRDMSLMKEVANVFPESYAMNCYF 89
P+VI+T D L + V VFP S +C++
Sbjct: 267 PRVILTKHDQMLKEAVLEVFPSS--RHCFY 294
>At4g15090 unknown protein
Length = 768
Score = 45.4 bits (106), Expect = 1e-05
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 2 DSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPK 61
D+TY K+P+ +GV +G E E FVW++K + + + PK
Sbjct: 220 DTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVADESMETFVWLIKTWLRAMGGRA--PK 277
Query: 62 VIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQ 97
VI+TD+D LM V+ + P + +HV + +
Sbjct: 278 VILTDQDKFLMSAVSELLPNTRHCFALWHVLEKIPE 313
>At1g80010 hypothetical protein
Length = 696
Score = 44.7 bits (104), Expect = 2e-05
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 2 DSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNM-P 60
D+T +N Y++P+ VG+ T +G G + E +VW + R LT + P
Sbjct: 296 DTTCLSNAYELPLVAFVGINHHGDTILLGCGLLADQSFETYVW---LFRAWLTCMLGRPP 352
Query: 61 KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQRCV 100
++ +T++ ++ V+ VFP ++ HV N+ Q V
Sbjct: 353 QIFITEQCKAMRTAVSEVFPRAHHRLSLTHVLHNICQSVV 392
>At1g44840 hypothetical protein
Length = 926
Score = 44.3 bits (103), Expect = 2e-05
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 1 MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMP 60
+D T+ YK + G Y +GF E +E++ W L +++ +
Sbjct: 577 VDGTHLKGKYKGVLLTSSGQDANFQVYPLGFAVVDSENDESWTWFFTKLERIIADSKTL- 635
Query: 61 KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQR 98
I++DR S++ V VFP++ C H+ N++ +
Sbjct: 636 -TILSDRHSSILVAVKRVFPQANHGACIIHLCRNIQTK 672
>At1g33460 mutator transposase MUDRA, putative
Length = 826
Score = 44.3 bits (103), Expect = 2e-05
Identities = 24/98 (24%), Positives = 43/98 (43%)
Query: 1 MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMP 60
+D T+ + K + + + Y V + E EN++W L L+ L K
Sbjct: 374 IDGTFLKHAVKGCLLTAIAHDANNQIYPVAWATVQFENAENWLWFLNQLKHDLELKDGSG 433
Query: 61 KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQR 98
V+++DR ++ V N P + C H+ N+K+R
Sbjct: 434 YVVISDRCKGIISAVKNALPNAEHRPCVKHIVENLKKR 471
>At3g22170 far-red impaired response protein, putative
Length = 814
Score = 43.1 bits (100), Expect = 5e-05
Identities = 25/97 (25%), Positives = 46/97 (46%), Gaps = 2/97 (2%)
Query: 1 MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMP 60
+D+TY N YKMP+ VGV +G + E + W+++ + + + P
Sbjct: 287 LDTTYVRNKYKMPLAIFVGVNQHYQYMVLGCALISDESAATYSWLMETWLRAIGGQ--AP 344
Query: 61 KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQ 97
KV++T+ D+ + V +FP + +HV V +
Sbjct: 345 KVLITELDVVMNSIVPEIFPNTRHCLFLWHVLMKVSE 381
>At4g08680 putative MuDR-A-like transposon protein
Length = 761
Score = 42.4 bits (98), Expect = 9e-05
Identities = 23/97 (23%), Positives = 44/97 (44%)
Query: 1 MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMP 60
+D T+ + K + VG + Y + + E EN++W ++ ++K L +
Sbjct: 308 LDGTFLKVVVKGVLLTAVGHDPNNQIYPIAWAVVQSENAENWLWFVQQIKKDLNLEDGSR 367
Query: 61 KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQ 97
VI++DR L+ V P + C H+ N+K+
Sbjct: 368 FVILSDRSKGLLSAVKQELPNAEHRMCVKHIVENLKK 404
>At4g08610 predicted transposon protein
Length = 907
Score = 42.4 bits (98), Expect = 9e-05
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 1 MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMP 60
+D+T+ +Y + Y + E + ++ W L+ ++ ++ +
Sbjct: 415 VDATFLKTVYGDMLVFATAQDPNHHNYIIASAVIDRENDASWSWFFNKLKTVIPDELGL- 473
Query: 61 KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQR 98
V V+DR S++K + +VFP + +C +H+ NVK R
Sbjct: 474 -VFVSDRHQSIIKSIMHVFPNARHGHCVWHLSQNVKVR 510
>At1g76320 putative phytochrome A signaling protein
Length = 670
Score = 42.4 bits (98), Expect = 9e-05
Identities = 24/90 (26%), Positives = 46/90 (50%), Gaps = 2/90 (2%)
Query: 2 DSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPK 61
+++Y + YK+P+ VGV +G G + +VW+++ L+ PK
Sbjct: 216 ETSYFVSKYKVPLVLFVGVNHHVQPVLLGCGLLADDTVYTYVWLMQSW--LVAMGGQKPK 273
Query: 62 VIVTDRDMSLMKEVANVFPESYAMNCYFHV 91
V++TD++ ++ +A V PE+ C +HV
Sbjct: 274 VMLTDQNNAIKAAIAAVLPETRHCYCLWHV 303
>At2g12720 putative protein
Length = 819
Score = 42.0 bits (97), Expect = 1e-04
Identities = 25/122 (20%), Positives = 54/122 (43%), Gaps = 2/122 (1%)
Query: 1 MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMP 60
+D T+ YK + + + + FG E ++++ W+ L+ ++ ++
Sbjct: 452 VDGTFLHGSYKGTLLTALAQDGNFQIFPLAFGVVDTENDDSWRWLFTQLKVVIPDATDL- 510
Query: 61 KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQRCVLDCKYPLGKKDGKEVKPRDV 120
I++DR S+ K + V+P + C +H+ N+ + +PL KK + + D
Sbjct: 511 -AIISDRHKSIGKAIGEVYPLAARGICTYHLYKNILVKFKRKDLFPLVKKAARCYRLNDF 569
Query: 121 VN 122
N
Sbjct: 570 TN 571
>At4g04140 putative transposon protein
Length = 946
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 27 YSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPKVIVTDRDMSLMKEVANVFPESYAMN 86
+ + F E + ++ W + L +++ ++ V+DR+ S+ K V VFP+++
Sbjct: 549 FPIAFAVVDSETDHSWTWFMNKLSEIIKDGPDL--TFVSDRNQSIFKSVGLVFPQAHHGA 606
Query: 87 CYFHVQANVK 96
C H++ NVK
Sbjct: 607 CLVHIRRNVK 616
>At1g35060 hypothetical protein
Length = 873
Score = 41.2 bits (95), Expect = 2e-04
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 1 MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMP 60
+D T+ YK + G Y + F E ++ + W L +++ N
Sbjct: 528 VDGTHLKGKYKGVLLTASGQDANFQVYPLAFAVVDSENDDAWTWFFTKLERIIAD--NNT 585
Query: 61 KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQR 98
I++DR S+ V VFP+++ C H+ N++ R
Sbjct: 586 LTILSDRHESIKVGVKKVFPQAHHGACIIHLCRNIQAR 623
>At5g18960 FAR1 - like protein
Length = 788
Score = 40.4 bits (93), Expect = 3e-04
Identities = 18/82 (21%), Positives = 41/82 (49%), Gaps = 2/82 (2%)
Query: 2 DSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPK 61
D++Y+ Y +P ++G +G E +E F+W+ + + ++ + P+
Sbjct: 403 DTSYRKGSYSVPFATIIGFNHHRQPVLLGCAMVADESKEAFLWLFQTWLRAMSGR--RPR 460
Query: 62 VIVTDRDMSLMKEVANVFPESY 83
IV D+D+ + + + VFP ++
Sbjct: 461 SIVADQDLPIQQALVQVFPGAH 482
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,185,995
Number of Sequences: 26719
Number of extensions: 119822
Number of successful extensions: 399
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 76
length of query: 146
length of database: 11,318,596
effective HSP length: 90
effective length of query: 56
effective length of database: 8,913,886
effective search space: 499177616
effective search space used: 499177616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC144730.5