BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144728.11 + phase: 0 /pseudo
(438 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02650 putative reverse transcriptase 47 2e-05
At1g47910 reverse transcriptase, putative 47 2e-05
At2g16680 putative non-LTR retroelement reverse transcriptase 47 3e-05
At2g17910 putative non-LTR retroelement reverse transcriptase 46 5e-05
At2g15540 putative non-LTR retroelement reverse transcriptase 46 5e-05
At5g20800 putative protein 45 6e-05
At1g26860 hypothetical protein 44 2e-04
At2g41580 putative non-LTR retroelement reverse transcriptase 42 5e-04
At2g01840 putative non-LTR retroelement reverse transcriptase 42 5e-04
At5g18880 SAE1-S9-protein - like 41 0.001
At3g45550 putative protein 41 0.001
At1g33710 hypothetical protein 41 0.001
At2g45230 putative non-LTR retroelement reverse transcriptase 40 0.003
At1g19030 hypothetical protein 40 0.003
At2g40680 putative non-LTR retroelement reverse transcriptase 40 0.003
At4g04650 39 0.004
At1g43730 hypothetical protein 39 0.004
At1g31100 hypothetical protein 39 0.004
At3g09510 putative non-LTR reverse transcriptase 39 0.006
At2g25550 putative non-LTR retroelement reverse transcriptase 39 0.006
>At2g02650 putative reverse transcriptase
Length = 365
Score = 47.4 bits (111), Expect = 2e-05
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 316 CVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSAGM 367
CV G L T L+ + + C C E E ++H+MF CP++ VW SA +
Sbjct: 53 CVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANI 104
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 47.0 bits (110), Expect = 2e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 303 LRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
++ P KL + GC+P L+ +G+ C C SC E +NH +F+C + Q+W
Sbjct: 831 VQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIW 890
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 46.6 bits (109), Expect = 3e-05
Identities = 18/44 (40%), Positives = 25/44 (55%)
Query: 319 GCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
G L L+ +G+ C C E E +NHL+F+CPF+ QVW
Sbjct: 1017 GALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVW 1060
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 45.8 bits (107), Expect = 5e-05
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 319 GCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
G +P L+ +G+ C C E E +NH++FECP + QVW
Sbjct: 1043 GAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVW 1086
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 45.8 bits (107), Expect = 5e-05
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 303 LRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
+++ RK C+ GCL T L + + C C E E +NHL+F CP S Q+W
Sbjct: 929 IKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIW 988
>At5g20800 putative protein
Length = 359
Score = 45.4 bits (106), Expect = 6e-05
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 303 LRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
++ P KL + C+P R L+ +G++C CA C + +NH +F+C + Q+W
Sbjct: 130 VQCPPKLRHFLWQILASCVPVRENLRKRGINCDIGCARCGATEKTINHTLFQCHPARQIW 189
>At1g26860 hypothetical protein
Length = 240
Score = 43.5 bits (101), Expect = 2e-04
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 293 VRVIGETFGALRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLM 352
++V+ ++ P KL + GC+P L+ +G++C C+ C E +NH +
Sbjct: 11 IKVLKAFSWKVQCPPKLYHFLWQILAGCVPITDNLRKRGINCEIGCSRCGALEETINHTL 70
Query: 353 FECPFSIQVW----MSAGMWYMCK 372
F C + Q+W + +WY+ K
Sbjct: 71 FLCHPARQIWALSQIPTIIWYIWK 94
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/60 (31%), Positives = 30/60 (49%)
Query: 303 LRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
L S K+ + G + L+ +GV C+ C + E LNH++F+CP + QVW
Sbjct: 778 LNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGCSMCPEKNETLNHILFQCPLARQVW 837
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 42.4 bits (98), Expect = 5e-04
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 316 CVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSA 365
C+ G L T L+++ + C C + E +NH++F C ++ VW SA
Sbjct: 1404 CLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSA 1453
>At5g18880 SAE1-S9-protein - like
Length = 295
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSAGMWYMCKMRP 375
LPTR L+ G++ P++ CS+ E HL FEC FS+ +W ++ K RP
Sbjct: 152 LPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIW----EFFASKFRP 202
>At3g45550 putative protein
Length = 851
Score = 41.2 bits (95), Expect = 0.001
Identities = 16/42 (38%), Positives = 21/42 (49%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
LPT L +G+ C C E E +NH +F CPF+ W
Sbjct: 688 LPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAW 729
>At1g33710 hypothetical protein
Length = 210
Score = 41.2 bits (95), Expect = 0.001
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSAGM------------- 367
LPT+ L G+ T C CS + ED +HL C F+ +W + +
Sbjct: 73 LPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSVRLELPAFSFVVWN 132
Query: 368 ----WYMCKMR---P*IRTLL--STQFSIYSKTRLWIFNHLLLL----FVGVYGSIEISK 414
W + + R P +R L+ S ++I+ + ++ NH +L F + I+ S
Sbjct: 133 DLMDWTLQRNRRSPPTLRKLIVQSVLYAIWKQRNNFLHNHETILPSVVFKTIDREIKNSI 192
Query: 415 FGKR*RRIARKLLTV 429
+R ++ R+L+T+
Sbjct: 193 TARRLKKRFRRLMTL 207
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 40.0 bits (92), Expect = 0.003
Identities = 18/57 (31%), Positives = 28/57 (48%)
Query: 306 PRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
P K++ CV CL L + ++ +C C E +NHL+F+CPF+ W
Sbjct: 1060 PPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTW 1116
>At1g19030 hypothetical protein
Length = 398
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 2/65 (3%)
Query: 337 NCASCSHEYEDLNHLMFECPFSIQVW--MSAGMWYMCKMRP*IRTLLSTQFSIYSKTRLW 394
NC C H E +HL F CP+S QVW ++ G+ + TL + SKT+ +
Sbjct: 326 NCILCQHTLETWDHLFFMCPYSFQVWTKLAKGILHASFTANWTETLKLIHDNRLSKTKCF 385
Query: 395 IFNHL 399
I ++
Sbjct: 386 IVGYI 390
>At2g40680 putative non-LTR retroelement reverse transcriptase
Length = 296
Score = 39.7 bits (91), Expect = 0.003
Identities = 16/42 (38%), Positives = 21/42 (49%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
L T ++ T C C+ E NHL F+CP+S QVW
Sbjct: 153 LTTGARMRSWNTQVDTTCKFCAEPVETRNHLFFQCPYSTQVW 194
>At4g04650
Length = 332
Score = 39.3 bits (90), Expect = 0.004
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
L TR LQ+ G+S P C C+ + HL FEC FS VW
Sbjct: 154 LHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVW 195
>At1g43730 hypothetical protein
Length = 320
Score = 39.3 bits (90), Expect = 0.004
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
L TR L+ G+S P C C+ E HL FECPF VW
Sbjct: 176 LHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVW 217
>At1g31100 hypothetical protein
Length = 1090
Score = 39.3 bits (90), Expect = 0.004
Identities = 18/42 (42%), Positives = 23/42 (53%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
LPTR L GV+ T+C CS E +HL+ C FS +W
Sbjct: 953 LPTRQRLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIW 994
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 38.9 bits (89), Expect = 0.006
Identities = 15/42 (35%), Positives = 21/42 (49%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
L T L +G+ +C C E E +NH +F CPF+ W
Sbjct: 183 LATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW 224
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 38.9 bits (89), Expect = 0.006
Identities = 15/42 (35%), Positives = 21/42 (49%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
L T L +G+ +C C E E +NH +F CPF+ W
Sbjct: 1449 LATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW 1490
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.359 0.163 0.562
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,824,262
Number of Sequences: 26719
Number of extensions: 274715
Number of successful extensions: 1041
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 66
length of query: 438
length of database: 11,318,596
effective HSP length: 102
effective length of query: 336
effective length of database: 8,593,258
effective search space: 2887334688
effective search space used: 2887334688
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC144728.11