BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144727.8 + phase: 0 /pseudo
(770 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13940 putative retroelement pol polyprotein 564 e-161
At1g70010 hypothetical protein 552 e-157
At1g57640 551 e-157
At2g20460 putative retroelement pol polyprotein 546 e-155
At2g16000 putative retroelement pol polyprotein 544 e-155
At4g17450 retrotransposon like protein 538 e-153
At1g31210 putative reverse transcriptase 524 e-149
At2g16670 putative retroelement pol polyprotein 502 e-142
At1g58140 hypothetical protein 483 e-136
At1g48710 hypothetical protein 482 e-136
At3g61330 copia-type polyprotein 479 e-135
At4g07810 putative polyprotein 438 e-123
At4g10990 putative retrotransposon polyprotein 437 e-122
At2g23330 putative retroelement pol polyprotein 435 e-122
At2g24660 putative retroelement pol polyprotein 423 e-118
At4g22040 LTR retrotransposon like protein 422 e-118
At3g25450 hypothetical protein 419 e-117
At4g23160 putative protein 407 e-113
At1g59265 polyprotein, putative 401 e-112
At1g58889 polyprotein, putative 400 e-111
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 564 bits (1454), Expect = e-161
Identities = 338/860 (39%), Positives = 456/860 (52%), Gaps = 104/860 (12%)
Query: 6 FLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRH 65
FL Y E QF +VK+ RSD+ E+M Y + GI+ Q SC TPQQNG ERK+RH
Sbjct: 635 FLKYAEKQFGKTVKMVRSDNGTEFMC--LSSYFRENGIIHQTSCVGTPQQNGRVERKHRH 692
Query: 66 LLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSDLHTF 125
+L+V R+LLF A +P +FW E++ T +LINR PS ++ +P+ L + YS L F
Sbjct: 693 ILNVARALLFQASLPIKFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKPVYSQLRVF 752
Query: 126 GCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYNQFML 185
G C+VH +K K G +S C F+GY KG+ YD+ + F VSR+V F F
Sbjct: 753 GSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVSRDVIFREEVFPY 812
Query: 186 HSISPDINDITILP------NFSIMPQSI------------------------------- 208
++ T LP +++I P +
Sbjct: 813 AGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSIDSVETERVVCTTDEVVLDTSVSDSEIP 872
Query: 209 -ERYKPEFTYVRKCIKQIPTAPPDTEPPP------DPEPVEP---RRSSRTSRAP----- 253
+ + P+ T + P+ P+T P P PV P R+S R + P
Sbjct: 873 NQEFVPDDTPPSSPLSVSPSGSPNTPTTPIVVPVASPIPVSPPKQRKSKRATHPPPKLND 932
Query: 254 -----------------------------------DRFSPDRYGSKHTSLTASLSSISIP 278
D S + S H + A+++ P
Sbjct: 933 YVLYNAMYTPSSIHALPADPSQSSTVPGKSLFPLTDYVSDAAFSSSHRAYLAAITDNVEP 992
Query: 279 TCYSQVVKDVRWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRY 338
+ + V+ W AM E+ AL+ N TWDIV PP +G +WV+ K NSDG++ RY
Sbjct: 993 KHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSDGTVERY 1052
Query: 339 NARLVTLRNKQEYGIDYDETFAPVAKMTTV--------------HQMDVKNIFLHGDLAE 384
ARLV NKQ G DY ETFAPV +MTTV +QMDV N FLHGDL E
Sbjct: 1053 KARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEE 1112
Query: 385 DIYMTPPQGL-FSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIH 443
++YM P G S VC+L++SLYGLKQAPR W++K SLL F F S + SLF +
Sbjct: 1113 EVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSY 1172
Query: 444 RTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGI 503
+ + +L+YVDD++I G+D +Q+ K+ L F MKDLG L YFLG+EV +GI
Sbjct: 1173 TRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGI 1232
Query: 504 FLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTIT 563
FL Q KYA +I+ +G + P TPLE N DDG +L DP YR+LVG L L T
Sbjct: 1233 FLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHT 1292
Query: 564 RPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWA 623
RP++S+ V ++QFM +PR H A R++RYLKGS G+ + L Y D++W
Sbjct: 1293 RPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQ 1352
Query: 624 GCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAEL 683
CP TR S++++ + L S ISWK+KKQ VS SS E+EYRAM A EI WLR L EL
Sbjct: 1353 SCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKEL 1412
Query: 684 GFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQI 743
G + P LY D+ +AI ANPVFHERTK IE DCHS+RDA + +I+ HV T Q+
Sbjct: 1413 GIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVRTTEQL 1472
Query: 744 ADILTKAVPRPRHQFLVGKL 763
AD+ TKA+ R + +L+ KL
Sbjct: 1473 ADVFTKALGRNQFLYLMSKL 1492
>At1g70010 hypothetical protein
Length = 1315
Score = 552 bits (1423), Expect = e-157
Identities = 310/800 (38%), Positives = 457/800 (56%), Gaps = 49/800 (6%)
Query: 6 FLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRH 65
F+T VE QF++++K RSD++ E F ++ KGI+ SCP TPQQN + ERK++H
Sbjct: 514 FVTMVENQFETTIKGVRSDNAPEL---NFTQFYHSKGIVPYHSCPETPQQNSVVERKHQH 570
Query: 66 LLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSDLHTF 125
+L+V RSL F + IP +W + + T V+LINRLP+ ++E PF L K Y + F
Sbjct: 571 ILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVF 630
Query: 126 GCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYNQFML 185
GC+C+ P ++HK ++ CAF+GY + KG+ D+ HS VSR+V F F
Sbjct: 631 GCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPF 690
Query: 186 HSISPDINDITILPNFSIMP----QSIERYKPEFTYVRKCIKQIPTAPPDTEPPPDPEPV 241
+ P+ + P QS + P + ++ +P+A P P
Sbjct: 691 LGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDS--SSSVEILPSANPTNNVPEPSVQT 748
Query: 242 EPRRSSRTSRAPDRF----------------SPDRYGSKHTSLTASLSSISIPTCYSQVV 285
R++ + + D + S DR + + A L P+ Y++
Sbjct: 749 SHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAE 808
Query: 286 KDVRWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTL 345
K W AM E L+ TW++ S P D + +GC+W++ +K NSDGS+ RY ARLV
Sbjct: 809 KLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQ 868
Query: 346 RNKQEYGIDYDETFAPVAKMTTVH--------------QMDVKNIFLHGDLAEDIYMTPP 391
Q+ GIDY+ETF+PVAK+ +V Q+D+ N FL+GDL E+IYM P
Sbjct: 869 GYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLP 928
Query: 392 QGLFSSSKG-------VCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHR 444
QG ++S +G VC+LK+SLYGLKQA R WY KF S+LLG F S + + F+ +
Sbjct: 929 QG-YASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFL-K 986
Query: 445 TSTGIVL-LLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGI 503
S GI L +L+Y+DD++I +++A + LK Q+ + F ++DLG L YFLGLE+ + KGI
Sbjct: 987 ISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGI 1046
Query: 504 FLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTIT 563
+ Q KYA L+ G P P++ ++ + D G + YR+L+G L L IT
Sbjct: 1047 HISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNIT 1106
Query: 564 RPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWA 623
RPDI+F V +++QF +PR HL AV +I++Y+KG+ GLF+S + +L Y++A++
Sbjct: 1107 RPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYN 1166
Query: 624 GCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAEL 683
C D+R S + +CMFL SLI WKS+KQ VSKSS E+EYR++ A E++WL FL EL
Sbjct: 1167 SCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKEL 1226
Query: 684 GFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQI 743
P ++PT L+ DN +AI N VFHERTK IE DCHS+R+ + L L H++T+LQI
Sbjct: 1227 QVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQI 1286
Query: 744 ADILTKAVPRPRHQFLVGKL 763
AD TK + L+ K+
Sbjct: 1287 ADPFTKPLYPSHFHRLISKM 1306
>At1g57640
Length = 1444
Score = 551 bits (1419), Expect = e-157
Identities = 322/846 (38%), Positives = 474/846 (55%), Gaps = 84/846 (9%)
Query: 4 KKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKN 63
K F+ VE QF + +KI RSD+ E++ +EY HKGI + SC TP QNG ERK+
Sbjct: 596 KDFIALVERQFDTEIKIVRSDNGTEFLC--MREYFLHKGIAHETSCVGTPHQNGRVERKH 653
Query: 64 RHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSDLH 123
RH+L++ R+L F +++P +FW E + + +LINR PS++++ SP+ L+K YS L
Sbjct: 654 RHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLR 713
Query: 124 TFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYNQF 183
FG +C+ H + K +S +C F+GY + KG+ +D+ F VSR+V F +F
Sbjct: 714 VFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEF 773
Query: 184 --------------MLHSISP---------------DINDITILPNFS---IMPQ-SIER 210
++ + P +I + T+ PN + I+P+ + E
Sbjct: 774 PYSKMSCNEEDERVLVDCVGPPFIEEAIGPRTIIGRNIGEATVGPNVATGPIIPEINQES 833
Query: 211 YKP-EFTYVRKCIKQIPTAPPDTEPPP----DPEPVEPRRSSRTSRAP------------ 253
P EF + + ++ T P P P++ RRSSR ++ P
Sbjct: 834 SSPSEFVSLSSLDPFLASSTVQTADLPLSSTTPAPIQLRRSSRQTQKPMKLKNFVTNTVS 893
Query: 254 -DRFSPD----------------RYGSKHTSLTASLSSISIPTCYSQVVKDVRWIKAMNE 296
+ SP+ R+ S H + A++++ PT Y++ + D W +AM+
Sbjct: 894 VESISPEASSSSLYPIEKYVDCHRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSA 953
Query: 297 EIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYD 356
EI++L+ N T+ IV+ PP + +G KWVY +K SDG++ RY ARLV L N Q+ G+DYD
Sbjct: 954 EIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYD 1013
Query: 357 ETFAPVAKMTTV--------------HQMDVKNIFLHGDLAEDIYMTPPQGLFSSSKG-V 401
ETFAPVAKM+TV HQMDV N FLHGDL E++YM PQG V
Sbjct: 1014 ETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKV 1073
Query: 402 CKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVI 461
C+L +SLYGLKQAPR W+ K S+L + F+ S + SLF + V +L+YVDD++I
Sbjct: 1074 CRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLII 1133
Query: 462 TGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQ 521
+GS + + K L + FHMKDLG L YFLG+EV ++G +L Q KY +IS GL
Sbjct: 1134 SGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLL 1193
Query: 522 STNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSP 581
P PLE N K +L D YR+LVG L L +TRP++S+ V ++QFM +P
Sbjct: 1194 GARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQNP 1253
Query: 582 RHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRS 641
R H A R++RYLK + G+ S + +++ + D+++A CP TR S+T + + L
Sbjct: 1254 RQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGD 1313
Query: 642 SLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI 701
+ ISWK+KKQ VS+SS E+EYRAM E++WL+ L +LG + +++D+ SAI
Sbjct: 1314 TPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAI 1373
Query: 702 *FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVG 761
NPV HERTK +EVDCH IRDA + +I+ V + Q+ADILTKA+ ++ +
Sbjct: 1374 ALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLR 1433
Query: 762 KLMIFD 767
KL I D
Sbjct: 1434 KLGILD 1439
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 546 bits (1407), Expect = e-155
Identities = 322/807 (39%), Positives = 461/807 (56%), Gaps = 66/807 (8%)
Query: 1 SMFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAE 60
++F F+ VE Q+ + VK RSD++ E F E+ + KGI+S SCP TP+QN + E
Sbjct: 671 TVFPAFIDLVENQYDTRVKSVRSDNAKELA---FTEFYKAKGIVSFHSCPETPEQNSVVE 727
Query: 61 RKNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYS 120
RK++H+L+V R+L+F + + +W + + T VFLINR PS ++ +PF L DYS
Sbjct: 728 RKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLPDYS 787
Query: 121 DLHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFY 180
L TFGC+C+ ++HK +S C F+GY KG+ D+ ++ +SRNV F
Sbjct: 788 QLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISRNVEFHE 847
Query: 181 NQFMLHS------ISPDI----------NDITI-LPNFSIMPQSIERYKPEFTYVRKCIK 223
F L S + D+ N IT LP+ I P + ++ I
Sbjct: 848 ELFPLASSQQSATTASDVFTPMDPLSSGNSITSHLPSPQISPST--------QISKRRIT 899
Query: 224 QIPTAPPDTE----PPPDPEPVEPRRSSRTSRAPDRFSPDRYGSKHTSLTASLSSISIPT 279
+ P D D P+ +S + + SP H ++S I IP
Sbjct: 900 KFPAHLQDYHCYFVNKDDSHPIS------SSLSYSQISPS-----HMLYINNISKIPIPQ 948
Query: 280 CYSQVVKDVRWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYN 339
Y + W A+++EI A++ TW+I S PP K +GCKWV++VK ++DGSL R+
Sbjct: 949 SYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFK 1008
Query: 340 ARLVTLRNKQEYGIDYDETFAPVAKMTTV--------------HQMDVKNIFLHGDLAED 385
AR+V Q+ G+DY ETF+PVAKM TV +Q+D+ N FL+GDL E
Sbjct: 1009 ARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEET 1068
Query: 386 IYMTPPQGLFSSSKG-------VCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNS 438
IYM P G ++ KG VC+LK+S+YGLKQA R W+ KF +SLL F +
Sbjct: 1069 IYMKLPDG-YADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDH 1127
Query: 439 SLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHS 498
+LF+ + ++LL+YVDD+VI + Q L E L ASF +++LG L YFLGLEV
Sbjct: 1128 TLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVAR 1187
Query: 499 TSKGIFLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN 558
TS+GI L Q KYA L++ A + P P+ N++ ++DG +L D +YR+LVG L
Sbjct: 1188 TSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLM 1247
Query: 559 *LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYS 618
LTITRPDI+F V ++ QF +PR HLAAV ++++Y+KG+ GLF+S + L Y+
Sbjct: 1248 YLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYT 1307
Query: 619 DANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRG 678
DA+W CPD+R S T + MF+ SSLISW+SKKQ VS+SS E+EYRA+ A E+ WL
Sbjct: 1308 DADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLST 1367
Query: 679 FLAELGFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVS 738
L L P LY+D+T+A+ NPVFHERTK IE+DCH++R+ D + L HV
Sbjct: 1368 LLLALRVHSGVPI-LYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVK 1426
Query: 739 TQLQIADILTKAVPRPRHQFLVGKLMI 765
T+ Q+ADILTK + + L+ K+ I
Sbjct: 1427 TKDQVADILTKPLFPYQFAHLLSKMSI 1453
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 544 bits (1401), Expect = e-155
Identities = 310/805 (38%), Positives = 462/805 (56%), Gaps = 54/805 (6%)
Query: 1 SMFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAE 60
++F F+ VE Q++ VK RSD++ E +F + KGI+S SCP TP+QN + E
Sbjct: 660 TVFPAFIQQVENQYKVKVKAVRSDNAPEL---KFTSFYAEKGIVSFHSCPETPEQNSVVE 716
Query: 61 RKNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYS 120
RK++H+L+V R+L+F + +P W + + T VFLINR PS ++ +P+ L Y
Sbjct: 717 RKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYE 776
Query: 121 DLHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFY 180
L TFGC+C+ P ++HK +S C F+GY + +KG+ D+ +++ +SRNV F
Sbjct: 777 QLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHE 836
Query: 181 NQF-----------------MLHSISPDINDITILPNFSIMPQSIERYKPEFTYVRKCIK 223
F M+ S I+D T P S +P I P+ + R ++
Sbjct: 837 EVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSP--SSLPSQISDLPPQISSQR--VR 892
Query: 224 QIPTAPPDTEPPPDPEPVEPRRSSRTSRAPDRFSPDRYGSKHTSLTASLSSISIPTCYSQ 283
+ P D +S S + H +++ I IPT Y++
Sbjct: 893 KPPAHLNDYH-------CNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTNYAE 945
Query: 284 VVKDVRWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLV 343
W +A++ EI A+++ TW+I + P K +GCKWV+++K +DG+L RY ARLV
Sbjct: 946 AQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLV 1005
Query: 344 TLRNKQEYGIDYDETFAPVAKMTTVH--------------QMDVKNIFLHGDLAEDIYMT 389
Q+ G+DY +TF+PVAKMTT+ Q+DV N FL+G+L E+I+M
Sbjct: 1006 AKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMK 1065
Query: 390 PPQGLFSSSKG-------VCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFI 442
P+G ++ KG V +LKRS+YGLKQA R W++KF SSLL F + + +LF+
Sbjct: 1066 IPEG-YAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFL 1124
Query: 443 HRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKG 502
V++L+YVDD+VI + A +L E+L F ++DLG+L YFLGLEV T+ G
Sbjct: 1125 KMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAG 1184
Query: 503 IFLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTI 562
I + Q KYA L+ G+ + PV P+ N+K +DDGD++ D YR++VG L LTI
Sbjct: 1185 ISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTI 1244
Query: 563 TRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANW 622
TRPDI+F V ++ QF +PR HL A R+++Y+KG+ GLF+S + L ++D++W
Sbjct: 1245 TRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDW 1304
Query: 623 AGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAE 682
A C D+R S TS+ MF+ SLISW+SKKQ VS+SS E+EYRA+ A E++WL L
Sbjct: 1305 ASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVS 1364
Query: 683 LGFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQ 742
L P LY+D+T+AI NPVFHERTK I++DCH++R+ D + L HV T+ Q
Sbjct: 1365 LQASPPVPI-LYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQ 1423
Query: 743 IADILTKAVPRPRHQFLVGKLMIFD 767
+ADILTK + + + L K+ I +
Sbjct: 1424 VADILTKPLFPYQFEHLKSKMSILN 1448
>At4g17450 retrotransposon like protein
Length = 1433
Score = 538 bits (1387), Expect = e-153
Identities = 302/790 (38%), Positives = 448/790 (56%), Gaps = 42/790 (5%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+F F+ V TQ+Q+ +K RSD++ E +F + GI++ SCP TP+QN + ER
Sbjct: 647 VFPAFINMVHTQYQTKLKSVRSDNAHEL---KFTDLFAAHGIVAYHSCPETPEQNSVVER 703
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
K++H+L+V R+LLF + IP FW + + T VFLINRLP+ V+ SP+ L Y
Sbjct: 704 KHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYES 763
Query: 122 LHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYN 181
L TFGC+C+ P ++HK ++ C F+GY +KG+ D+ H+ +SR+V F +
Sbjct: 764 LKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHED 823
Query: 182 --QFMLHSISPDINDITILPNFSIMPQSIERYKPEFTYVRKCIKQIPTAP-PDTEPPPDP 238
F+ +I DI D L F P + E T + I T P D
Sbjct: 824 IFPFISSTIKDDIKDFFPLLQF---PARTDDLPLEQTSI------IDTHPHQDVSSSKAL 874
Query: 239 EPVEPRRSSRTSRAPDRFSPDRYGSKHTS-----LTASLSSISIPTCYSQVVKDVRWIKA 293
P +P S+ + P + D + +T+ ++++ IP YS+ W A
Sbjct: 875 VPFDPL--SKRQKKPPKHLQDFHCYNNTTEPFHAFINNITNAVIPQRYSEAKDFKAWCDA 932
Query: 294 MNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGI 353
M EEI A+ TW +VS PP+ K +GCKWV+++K N+DGS+ RY ARLV QE G+
Sbjct: 933 MKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGL 992
Query: 354 DYDETFAPVAKMTTV--------------HQMDVKNIFLHGDLAEDIYMTPPQGLFS--- 396
DY+ETF+PVAK+T+V HQ+D+ N FL+GDL E+IYM P G
Sbjct: 993 DYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVG 1052
Query: 397 ---SSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLLL 453
+C+L +S+YGLKQA R WY K ++L G F S + +LFI + ++ +L
Sbjct: 1053 EALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVL 1112
Query: 454 LYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATY 513
+YVDD++I + + + + +L + F ++DLG YFLG+E+ + KGI + Q KY
Sbjct: 1113 VYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILE 1172
Query: 514 LISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQ 573
L+S G + P PL+ +VK +++DG L D YR+LVG L L ITRPDI++ V
Sbjct: 1173 LLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNT 1232
Query: 574 VSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVT 633
+ QF H+P +HL+AV +++RYLKG+ GLF+S + L Y+D+++ C D+R V
Sbjct: 1233 LCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVA 1292
Query: 634 SWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSL 693
++CMF+ L+SWKSKKQ VS S+ E+E+RAM E+IWL + P P L
Sbjct: 1293 AYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYL 1352
Query: 694 YADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPR 753
Y DNT+A+ V N VFHERTK +E+DC+ R+A + + V T Q+AD LTKA+
Sbjct: 1353 YCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADPLTKAIHP 1412
Query: 754 PRHQFLVGKL 763
+ L+GK+
Sbjct: 1413 AQFHKLIGKM 1422
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 524 bits (1350), Expect = e-149
Identities = 306/809 (37%), Positives = 446/809 (54%), Gaps = 53/809 (6%)
Query: 1 SMFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAE 60
S+F F VE Q + +K+F+SD GE++S++ + +L GI + SCP TPQQNGLAE
Sbjct: 558 SVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAE 617
Query: 61 RKNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYS 120
RK+RHL+++ S+LF + P +FWVE+ T ++INRLPS V++ SP+ LF + DYS
Sbjct: 618 RKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALFGEKPDYS 677
Query: 121 DLHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFY 180
L FG C+ L P ++K +S+QC F+GY++ +KG+ C+ +SRNV F
Sbjct: 678 SLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKVYISRNVIFNE 737
Query: 181 NQFMLHSISPDINDITILPNFSI-MPQSIERYKPEFTYVRKCIKQIPTAPPD-------- 231
++ +++P +S + Q+ + K V Q+ + P D
Sbjct: 738 SELPFKE-----KYQSLVPQYSTPLLQAWQHNKISEISVPAAPVQLFSKPIDLNTYAGSQ 792
Query: 232 -TEPPPDPEPVEPRRSSRTSRAP----DRFSPDRYGSKHTSLTASLSSISIP-TCYSQV- 284
TE DPEP S P + ++ + H T S + I P T Y+ +
Sbjct: 793 VTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQEQVINSHAMTTRSKAGIQKPNTRYALIT 852
Query: 285 --------------VKDVRWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLN 330
+K W +A++EEI + TW +V D+ + KWV+ KL+
Sbjct: 853 SRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLH 912
Query: 331 SDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAKMTTVH--------------QMDVKNI 376
DGS+++ ARLV QE G+DY ETF+PV + T+ Q+DV N
Sbjct: 913 PDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNA 972
Query: 377 FLHGDLAEDIYMTPPQGLFSSSK--GVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHS 434
FLHG+L E ++M P G K VC+L +++YGLKQAPRAW++ F + LL + F S
Sbjct: 973 FLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCS 1032
Query: 435 QYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGL 494
+ + SLF+ I+ LLLYVDD+++TGSD + ++ L + L F MKDLG YFLG+
Sbjct: 1033 KSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGI 1092
Query: 495 EVHSTSKGIFLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLLYRQLV 554
++ + G+FLHQ YAT ++ AG+ NP+ TPL + + ++ +P +R L
Sbjct: 1093 QIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQQL--DNLNSELFAEPTYFRSLA 1150
Query: 555 GSLN*LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKL 614
G L LTITRPDI F V + Q MHSP ++RI+RY+KG+ GL + L
Sbjct: 1151 GKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTL 1210
Query: 615 SAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEII 674
SAYSD++ AGC +TR S T +C+ L S+LISW +K+Q VS SSTE+EYRA+ A EI
Sbjct: 1211 SAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREIT 1270
Query: 675 WLRGFLAELGFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISL 734
W+ L +LG P PT +Y DN SA+ ANP H R+K + D H IR+ LI
Sbjct: 1271 WISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIET 1330
Query: 735 PHVSTQLQIADILTKAVPRPRHQFLVGKL 763
H+S Q+AD+ TK++PR L KL
Sbjct: 1331 QHISATFQLADVFTKSLPRRAFVDLRSKL 1359
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 502 bits (1292), Expect = e-142
Identities = 315/824 (38%), Positives = 433/824 (52%), Gaps = 79/824 (9%)
Query: 4 KKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKN 63
K F + QF +K RSD+ E++ ++ Q +G++ +RSC TP++N ERK+
Sbjct: 496 KNFFAMTDRQFNVKIKTVRSDNGTEFLC--LTKFFQEQGVIHERSCVATPERNDRVERKH 553
Query: 64 RHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSDLH 123
RHLL+V R+L F A +P +FW E + T +LINR PS V+ +P+ L K Q + L
Sbjct: 554 RHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFDHLR 613
Query: 124 TFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYNQF 183
FG +C+ H K +S +C F+GY + KG+ +D+ + F VSR+V F +F
Sbjct: 614 VFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSELEF 673
Query: 184 MLHSISPDIN--------------------DITILPNFSIMPQSI--ERYKPEFTYVRKC 221
IS + N ++ + N P P T R
Sbjct: 674 PFR-ISHEQNVIEEEEEALWAPIVDGLIEEEVHLGQNAGPTPPICVSSPISPSATSSRS- 731
Query: 222 IKQIPTAPPDTEPPPDPEPVEPRRSSRTSR-------------------APDRFSPDRYG 262
+ ++P DTE P P SS +S AP P R
Sbjct: 732 -EHSTSSPLDTEVVPTPATSTTSASSPSSPTNLQFLPLSRAKPTTAQAVAPPAVPPPRRQ 790
Query: 263 S---KHTSLTASLSSISIPTCYSQVVK------------DVRWIKAMNE---EIQALQEN 304
S K +T ++ C K D R A + I A +EN
Sbjct: 791 STRNKAPPVTLKDFVVNTTVCQESPSKLNSILYQLQKRDDTRRFSASHTTYVAIDAQEEN 850
Query: 305 LTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAK 364
TW I PP + +G +WVY VK NSDGS+ RY ARLV L NKQ+ G DY ETFAPVAK
Sbjct: 851 HTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAPVAK 910
Query: 365 MTTV--------------HQMDVKNIFLHGDLAEDIYMTPPQGLFSSSKG-VCKLKRSLY 409
M TV HQMDV N FLHGDL E++YM P G +S VC+L+++LY
Sbjct: 911 MATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVCRLRKALY 970
Query: 410 GLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFI 469
GLKQAPR W+EK ++L + F S + SLF + + +L+YVDD++ITG+
Sbjct: 971 GLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDLIITGNSQRAT 1030
Query: 470 QRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQSTNPVDTP 529
Q+ KE L + FHMKDLG L YFLG+EV ++ GI++ Q KYA +IS GL P + P
Sbjct: 1031 QQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVKPANFP 1090
Query: 530 LEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSPRHLHLAAV 589
LE N K +L DP YR+LVG L L +TR D++F V +++FM PR H AA
Sbjct: 1091 LEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPREDHWAAA 1150
Query: 590 RRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSK 649
R++RYLK G+F +++ + D++WAG P +R SVT + + S ISWK+K
Sbjct: 1151 LRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFGDSPISWKTK 1210
Query: 650 KQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FVANPVF 709
KQ VSKSS E+EYRAM SE++WL+ L LG +P + D+ SAI NPVF
Sbjct: 1211 KQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKSAIYIATNPVF 1270
Query: 710 HERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPR 753
HERTK IE+D H +RD + + +I+ HV T Q+ADI TK + R
Sbjct: 1271 HERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGR 1314
>At1g58140 hypothetical protein
Length = 1320
Score = 483 bits (1243), Expect = e-136
Identities = 280/769 (36%), Positives = 408/769 (52%), Gaps = 62/769 (8%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+FKKF +VE + +K RSD GE+ S EF +Y + GI Q + P +PQQNG+AER
Sbjct: 574 IFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAER 633
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
KNR +L++ RS+L +P W EA+A V+L+NR P+ + +P + S
Sbjct: 634 KNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSH 693
Query: 122 LHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYN 181
L FG + H+P ++ KL +S + F+GY N+ KG+ Y+ +SRN+ F
Sbjct: 694 LRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEE 753
Query: 182 -QFMLHSISPDINDITILPNFSIMPQSIERYKPEFTYVRKCIKQIPTAPPDTEPPPDPEP 240
++ +S D N P+F E KPE P E PP EP
Sbjct: 754 GEWDWNSNEEDYN---FFPHF-------EEDKPE---------------PTREEPPSEEP 788
Query: 241 VEPRRSSRTSRAPDRFSPDRYGSKHTSLTASLSSISIPTCYSQVVKDVRWIKAMNEEIQA 300
P S +S+ ++ P + + ++ W AM+EEI++
Sbjct: 789 TTPPTSPTSSQIEEKCEP--------------------MDFQEAIEKKTWRNAMDEEIKS 828
Query: 301 LQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFA 360
+Q+N TW++ S P K +G KWVY K NS G + RY ARLV Q GIDYDE FA
Sbjct: 829 IQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFA 888
Query: 361 PVAKMTTV--------------HQMDVKNIFLHGDLAEDIYMTPPQGLFSSSKG--VCKL 404
PVA++ TV HQMDVK+ FL+GDL E++Y+ PQG + V +L
Sbjct: 889 PVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRL 948
Query: 405 KRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGS 464
K++LYGLKQAPRAW + F Y +L+I I++ LYVDD++ TG+
Sbjct: 949 KKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGN 1008
Query: 465 DNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQSTN 524
+ + + K+++ F M D+G + Y+LG+EV GIF+ Q YA ++ + +N
Sbjct: 1009 NPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSN 1068
Query: 525 PVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSPRHL 584
PV TP+E +K + + DP ++ LVGSL LT TRPDI + V VS++M P
Sbjct: 1069 PVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTT 1128
Query: 585 HLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLI 644
H A +RI+RY+KG+ + GL +S + KL YSD++W G D R S + + ++ +
Sbjct: 1129 HFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAF 1188
Query: 645 SWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FV 704
+W SKKQ V+ S+ E+EY A + IWLR L EL P EPT ++ DN SAI
Sbjct: 1189 TWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALA 1248
Query: 705 ANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPR 753
NPVFH+R+K I+ H IR+ + + L +V T Q+ADI TK + R
Sbjct: 1249 KNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKR 1297
>At1g48710 hypothetical protein
Length = 1352
Score = 482 bits (1240), Expect = e-136
Identities = 284/772 (36%), Positives = 414/772 (52%), Gaps = 36/772 (4%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+FKKF +VE + +K RSD GE+ S EF +Y + GI Q + P +PQQNG+AER
Sbjct: 574 IFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAER 633
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
KNR +L++ RS+L +P W EA+A V+L+NR P+ + +P + S
Sbjct: 634 KNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSH 693
Query: 122 LHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYN 181
L FG + H+P ++ KL +S + F+GY N+ KG+ Y+ +SRN+ F
Sbjct: 694 LRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEE 753
Query: 182 -QFMLHSISPDINDITILPNFSIMPQSIERYKPEFTYVRKCIKQIPTAPPDTEPPPDP-- 238
++ +S D N P+F E +PE T ++ P + T PP P
Sbjct: 754 GEWDWNSNEEDYN---FFPHF-------EEDEPEPT------REEPPSEEPTTPPTSPTS 797
Query: 239 EPVEPRRSSRTSRAPDRFSPDRYGSKHTSLTA-SLSSISIPTCYSQVVKDVRWIKAMNEE 297
+E S RT R +LT L + P + + ++ W AM+EE
Sbjct: 798 SQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEE 857
Query: 298 IQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDE 357
I+++Q+N TW++ S P K +G KWVY K NS G + RY ARLV Q GIDYDE
Sbjct: 858 IKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDE 917
Query: 358 TFAPVAKMTTV--------------HQMDVKNIFLHGDLAEDIYMTPPQGLFSSSKG--V 401
FAPVA++ TV HQMDVK+ FL+GDL E++Y+ PQG + V
Sbjct: 918 VFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKV 977
Query: 402 CKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVI 461
+LK++LYGLKQAPRAW + F Y +L+I I++ LYVDD++
Sbjct: 978 LRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIF 1037
Query: 462 TGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQ 521
TG++ + + K+++ F M D+G + Y+LG+EV GIF+ Q YA ++ +
Sbjct: 1038 TGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMD 1097
Query: 522 STNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSP 581
+NPV TP+E +K + + DP ++ LVGSL LT TRPDI + V VS++M P
Sbjct: 1098 DSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHP 1157
Query: 582 RHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRS 641
H A +RI+RY+KG+ + GL +S + KL YSD++W G D R S + + ++
Sbjct: 1158 TTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGD 1217
Query: 642 SLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI 701
+ +W SKKQ V S+ E+EY A + IWLR L EL P EPT ++ DN SAI
Sbjct: 1218 TAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAI 1277
Query: 702 *FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPR 753
NPVFH+R+K I+ H IR+ + + L +V T Q+ADI TK + R
Sbjct: 1278 ALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKR 1329
>At3g61330 copia-type polyprotein
Length = 1352
Score = 479 bits (1234), Expect = e-135
Identities = 282/772 (36%), Positives = 412/772 (52%), Gaps = 36/772 (4%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+FKKF +VE + +K RSD GE+ S EF +Y + GI Q + P +PQQNG+ ER
Sbjct: 574 IFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVER 633
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
KNR +L++ RS+L +P W EA+A V+L+NR P+ + +P + S
Sbjct: 634 KNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSH 693
Query: 122 LHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYN 181
L FG + H+P ++ KL +S + F+GY N+ KG+ Y+ +SRN+ F
Sbjct: 694 LRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEE 753
Query: 182 -QFMLHSISPDINDITILPNFSIMPQSIERYKPEFTYVRKCIKQIPTAPPDTEPPPDP-- 238
++ +S D N P+F E +PE T ++ P + T PP P
Sbjct: 754 GEWDWNSNEEDYN---FFPHF-------EEDEPEPT------REEPPSEEPTTPPTSPTS 797
Query: 239 EPVEPRRSSRTSRAPDRFSPDRYGSKHTSLTA-SLSSISIPTCYSQVVKDVRWIKAMNEE 297
+E S RT R +LT L + P + + ++ W AM+EE
Sbjct: 798 SQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEE 857
Query: 298 IQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDE 357
I+++Q+N TW++ S P K +G KWVY K NS G + RY ARLV Q GIDYDE
Sbjct: 858 IKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDE 917
Query: 358 TFAPVAKMTTV--------------HQMDVKNIFLHGDLAEDIYMTPPQGLFSSSKG--V 401
FAPVA++ TV HQMDVK+ FL+GDL E++Y+ PQG + V
Sbjct: 918 VFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKV 977
Query: 402 CKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVI 461
+LK+ LYGLKQAPRAW + F Y +L+I I++ LYVDD++
Sbjct: 978 LRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIF 1037
Query: 462 TGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQ 521
TG++ + + K+++ F M D+G + Y+LG+EV GIF+ Q YA ++ +
Sbjct: 1038 TGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKID 1097
Query: 522 STNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSP 581
+NPV TP+E +K + + DP ++ LVGSL LT TRPDI + V VS++M P
Sbjct: 1098 DSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHP 1157
Query: 582 RHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRS 641
H A +RI+RY+KG+ + GL +S + KL YSD++W G D R S + + ++
Sbjct: 1158 TTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGD 1217
Query: 642 SLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI 701
+ +W SKKQ V+ S+ E+EY A + IWLR L EL P EPT ++ DN SAI
Sbjct: 1218 TAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAI 1277
Query: 702 *FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPR 753
NPVFH+R+K I+ H IR+ + + L +V T Q+AD TK + R
Sbjct: 1278 ALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKR 1329
>At4g07810 putative polyprotein
Length = 1366
Score = 438 bits (1127), Expect = e-123
Identities = 282/832 (33%), Positives = 420/832 (49%), Gaps = 111/832 (13%)
Query: 1 SMFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAE 60
++F +FL V+TQF +VK RSD++ E +F++ L GI SC TPQQN + E
Sbjct: 568 TIFPEFLKLVQTQFGCTVKSIRSDNAPEL---QFKDLLATFGIFHYHSCAYTPQQNYVVE 624
Query: 61 RKNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYS 120
R ++HLL+V RSL F + IP +W E ++T FLINR P+ +E SP+ L+K DY+
Sbjct: 625 RNHQHLLNVARSLYFQSNIPLAYWPECVSTAAFLINRTPTPNLEHKSPYEVLYKKLPDYN 684
Query: 121 DLHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFY 180
L F C+C+ E+HK ++ C F+GY + KG+ D+ +++ V+RNV F
Sbjct: 685 SLRVFCCLCYASTHQHERHKFTERATSCVFIGYESGFKGYKILDLESNTVSVTRNVVFHE 744
Query: 181 NQFML---HSI-SPDINDITILP-------------------NFSIMPQSIERYKPEFTY 217
F HS + D ++LP N + P P T+
Sbjct: 745 TIFPFIDKHSTQNVSFFDDSVLPISEKQKENRFQIYDYFNVLNLEVCPVIEPTTVPAHTH 804
Query: 218 VRKCIKQIPTAPPDTEPPPDPEPVEPRRSSRTSRAPDRF---------SPDRYGSKHTSL 268
R T D + PR+ +R ++ S +G+ H SL
Sbjct: 805 TRSLAPLSTTVTNDQFGNDMDNTLMPRKETRAPSYLSQYHCSNVLKEPSSSLHGTAH-SL 863
Query: 269 TASLSSISI----------------PTCYSQVVKDVRWIKAMNEEIQALQENLTWDIVSC 312
++ LS + PT + + +W+ AMN E+ AL T +I S
Sbjct: 864 SSHLSYDKLSNEYRLFCFAIIAEKEPTTFKEAALLQKWLDAMNVELDALVSTSTREICSL 923
Query: 313 PPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAKMTTVH--- 369
+ +GCKWV+ +K SDG++ RY ARLV Q+ G+DY +TF+P+AK+T+V
Sbjct: 924 HDGKRAIGCKWVFKIKYKSDGTIERYKARLVANGYTQQEGVDYIDTFSPIAKLTSVRLIL 983
Query: 370 -----------QMDVKNIFLHGDLAEDIYMTPPQGLFSSSKG-------VCKLKRSLYGL 411
QMDV N FLHGD E+IYM PQG ++ KG VC+L +SLYGL
Sbjct: 984 ALAAIHNWSISQMDVTNAFLHGDFEEEIYMQLPQG-YTPRKGELLPKRPVCRLVKSLYGL 1042
Query: 412 KQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQR 471
KQA R W+ KF L+ F S ++ +LF+ + LL+YVDD+++ + ++ +
Sbjct: 1043 KQASRQWFHKFSGVLIQNGFMQSLFDPTLFVRVREDTFLALLVYVDDIMLVSNKDSAVIE 1102
Query: 472 LKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQSTNPVDTPLE 531
+K+ L F +KDLG YFLGLE+ + +GI + Q KYA L+ G PV TP+E
Sbjct: 1103 VKQILAKEFKLKDLGQKRYFLGLEIARSKEGISISQRKYALELLEEFGFLGCKPVPTPME 1162
Query: 532 VNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSPRHLHLAAVRR 591
+N+K ++DG +L D YR+L+G L LT+TRPDI F V +++Q+M +PR HL A RR
Sbjct: 1163 LNLKLSQEDGALLLDASHYRKLIGRLVYLTVTRPDICFAVNKLNQYMSAPREPHLMAARR 1222
Query: 592 IIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQ 651
I+RYLK G+F+ + A++DA+W+ CP++ S+ S++ W
Sbjct: 1223 ILRYLKNDPGQGVFYPASSTLTFRAFADADWSNCPESSISI---------SIVFWL---- 1269
Query: 652 ARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FVANPVFHE 711
K STE+ WL L + F +Y D+ SA+ N VFHE
Sbjct: 1270 ----KLSTEA-------------WLVLSLPDTIF-------VYYDDESALHIAKNSVFHE 1305
Query: 712 RTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGKL 763
TK D H +R+ I HV T+ I D+LTK + R +L+ K+
Sbjct: 1306 STKNFLHDIHVVREKVAVGFIKTLHVDTEHNIVDLLTKPLTALRFNYLLSKM 1357
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 437 bits (1123), Expect = e-122
Identities = 233/544 (42%), Positives = 331/544 (60%), Gaps = 22/544 (4%)
Query: 226 PTAPPDTEPPPDPEPVEPRRSSRTSRAPDRFSPDRYGSKHTSLTASLSSISIPTCYSQVV 285
PT E P P P++ + S D+ S + + + P ++Q +
Sbjct: 475 PTTSTSIETPSSSIP--PKKITTPYPMSTAISYDKLTPLFHSYICAYNVETEPKAFTQAM 532
Query: 286 KDVRWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTL 345
K +W +A NEE+ AL++N TW + S +GCKWV+++K N DGS+ RY ARLV
Sbjct: 533 KSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTIKYNPDGSIERYKARLVAQ 592
Query: 346 RNKQEYGIDYDETFAPVAKMTTVH--------------QMDVKNIFLHGDLAEDIYM--- 388
Q+ GIDY ETF+PVAK +V QMDV N FLHG+L E+IYM
Sbjct: 593 GFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLP 652
Query: 389 ---TPPQGLFSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRT 445
TPP G+ SK VC+L +SLYGLKQA R WY++ S LG F S ++++F+ +
Sbjct: 653 QGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMFVKVS 712
Query: 446 STGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFL 505
T I+++L+YVDD++I +D++ ++ LKE L + F +KDLG +FLGLE+ +S+GI +
Sbjct: 713 CTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSEGISV 772
Query: 506 HQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRP 565
Q KYA L+ GL P P++ N+ ++ G +LP+ YR+LVG L L ITRP
Sbjct: 773 CQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITRP 832
Query: 566 DISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGC 625
DI+F V +SQF+ +P +H+ A +++RYLKG+ GL +S + L+ +SDA+W C
Sbjct: 833 DITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGFSDADWGTC 892
Query: 626 PDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGF 685
D+R SVT +C++L +SLI+WKSKKQ+ VS+SSTESEYR++ A EIIWL+ L +L
Sbjct: 893 KDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLKDLHV 952
Query: 686 P*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIAD 745
T P L+ DN SA+ NPVFHERTK IE+DCH++RD + HV T Q+AD
Sbjct: 953 TMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGNQLAD 1012
Query: 746 ILTK 749
ILTK
Sbjct: 1013 ILTK 1016
Score = 45.8 bits (107), Expect = 9e-05
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 1 SMFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAE 60
++F F+ + TQ+ + +K RSD+ E F ++++ +G++ Q SC TPQQN + E
Sbjct: 277 NIFPVFVKLIFTQYNAKIKAIRSDNVKELA---FTKFVKEQGMIHQFSCAYTPQQNSVVE 333
Query: 61 R------------KNRHLLDVTRSLLF 75
R H + +TR+++F
Sbjct: 334 RYPSGYKGYKVLDLESHSISITRNVVF 360
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 435 bits (1119), Expect = e-122
Identities = 231/522 (44%), Positives = 317/522 (60%), Gaps = 15/522 (2%)
Query: 261 YGSKHTSLTASLSSISIPTCYSQVVKDVRWIKAMNEEIQALQENLTWDIVSCPPDIKPMG 320
Y + H + A++ + P + + W +AM++EI AL+ N TWDI P K +
Sbjct: 970 YSANHIAFMAAILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAIS 1029
Query: 321 CKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAKMTTV------------ 368
KWVY +K NSDG+L R+ ARLV + N Q+ G+D+ ETFAPVAK+TTV
Sbjct: 1030 SKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDW 1089
Query: 369 --HQMDVKNIFLHGDLAEDIYMTPPQGLFSSSKG-VCKLKRSLYGLKQAPRAWYEKFCSS 425
HQMDV N FLHGDL E++YM P G S VC+L++SLYGLKQAPR W+ K ++
Sbjct: 1090 EVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTA 1149
Query: 426 LLGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDL 485
L F+ S + SLF + I+ +L+YVDD+++ G++ I R K QLH FHMKDL
Sbjct: 1150 LRNIGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDL 1209
Query: 486 GNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILP 545
G L YFLGLEV G L Q KYA ++ GL P P+ +N K G +
Sbjct: 1210 GKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFT 1269
Query: 546 DPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLF 605
+P YR+LVG LTITRPD+S+ V +SQFM +P H A R++RYLKGS G+F
Sbjct: 1270 NPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIF 1329
Query: 606 FSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRA 665
+ ++AY D+++ CP TR S++++ ++L S ISWK+KKQ VS SS E+EYRA
Sbjct: 1330 LRSDSSLIINAYCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRA 1389
Query: 666 MYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRD 725
M E+ WL+ L +LG + P L+ D+ +AI ANPVFHERTK IE DCH +RD
Sbjct: 1390 MAYTLKELKWLKALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRD 1449
Query: 726 AYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGKLMIFD 767
A + LI+ H+ T+ Q+AD+LTK++PRP + L+ L + D
Sbjct: 1450 AVLDKLITTEHIYTEDQVADLLTKSLPRPTFERLLSTLGVTD 1491
Score = 146 bits (368), Expect = 5e-35
Identities = 96/286 (33%), Positives = 141/286 (48%), Gaps = 18/286 (6%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+ K F E QF VK FR+D+ E+M Y Q GIL Q SC +TPQQNG ER
Sbjct: 604 LIKNFCAMSERQFGKQVKAFRTDNGTEFMC--LTPYFQTHGILHQTSCVDTPQQNGRVER 661
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
K+RH+L+V R+ LF +P +FW E++ T LINR PS V++ +P+ LF + Y
Sbjct: 662 KHRHILNVARACLFQGNLPVKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYDM 721
Query: 122 LHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYN 181
L +FGC+C+ H+ P K K +S +C F+GY + K + YD+ SR+V F +
Sbjct: 722 LRSFGCLCYAHIRPRNKDKFTSRSRKCVFIGYPHGKKAWRVYDLETGKIFASRDVRFHED 781
Query: 182 QFMLHSIS-----------PDINDITILP-NFSIMPQSIERYKPEFTYVRKCIKQIPTA- 228
+ + + P +ND LP + + +++ I Q P +
Sbjct: 782 IYPYATATQSNVPLPPPTPPMVNDDWFLPISTQVDSTNVDSSSSSSPAQSGSIDQPPRSI 841
Query: 229 --PPDTEPPPDPEPV-EPRRSSRTSRAPDRFSPDRYGSKHTSLTAS 271
P T P PE + SS SR+ DR + D S T L ++
Sbjct: 842 DQSPSTSTNPVPEEIGSIVPSSSPSRSIDRSTSDLSASDTTELLST 887
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 423 bits (1088), Expect = e-118
Identities = 245/532 (46%), Positives = 316/532 (59%), Gaps = 42/532 (7%)
Query: 254 DRFSPDRYGSKHTSLTASLSSISIPTCYSQVVKDVRWIKAMNEEIQALQENLTWDIVSCP 313
D S D + + H + A++++ P + + V+ W AM +E+ AL+ N TWDIV P
Sbjct: 615 DYVSDDCFSAGHKAFLAAITANDEPKHFKEAVRIKVWNDAMFKEVDALEINKTWDIVDLP 674
Query: 314 PDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAKMTTV----- 368
P +G +WVY K N+DGS+ RY ARLV NKQ G DY+ETFAPV KMTTV
Sbjct: 675 PGKVAIGSQWVYKTKYNADGSIERYKARLVVQGNKQVEGEDYNETFAPVVKMTTVRTLLR 734
Query: 369 ---------HQMDVKNIFLHGDLAEDIYMTPPQGL-FSSSKGVCKLKRSLYGLKQAPRAW 418
+QMDV N FLHGDL E++YM P G S VC+L++SLYGLKQAPR W
Sbjct: 735 LVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCW 794
Query: 419 YEKFCSSLL--GFCFSHSQYNSSLFIHRTSTGIVL-LLLYVDDMVITGSDNAFIQRLKEQ 475
++K +LL GF H Y+ F T GI L +L+YVDD++I G+D +Q+ KE
Sbjct: 795 FKKLSDALLRFGFVQGHEDYS---FFSYTRNGIELRVLVYVDDLLICGNDGYMLQKFKEY 851
Query: 476 LHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQSTNPVDTPLEVNVK 535
L F MKDLG L YFLG+EV S+GIFL Q KYA +I+ +G P TPLE N
Sbjct: 852 LGRCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITDSGNLGCRPALTPLEQNHH 911
Query: 536 YHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRY 595
DDG +L D YR+LVG L L TRP++S+ V +SQFM +PR HLAA RI+R+
Sbjct: 912 LATDDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHVLSQFMQTPREAHLAAAMRIVRF 971
Query: 596 LKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVS 655
LKGS G+ + +L Y D+++ CP TR S++++ + L S ISWK+KKQ VS
Sbjct: 972 LKGSPGQGILLNADTELQLDVYCDSDFQTCPKTRRSLSAYVVLLGGSPISWKTKKQDTVS 1031
Query: 656 KSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FVANPVFHERTKL 715
SS E+EYRAM A EI WLR L EL ANPVFHERTK
Sbjct: 1032 HSSAEAEYRAMSVALREIKWLRKLLKEL---------------------ANPVFHERTKH 1070
Query: 716 IEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGKLMIFD 767
IE DCHS+RDA + +I+ HV T Q+ADI TKA+ R + +L+ KL I D
Sbjct: 1071 IESDCHSVRDAVRDGIITTHHVRTNEQLADIFTKALGRSQFLYLMSKLGIQD 1122
Score = 145 bits (366), Expect = 8e-35
Identities = 77/191 (40%), Positives = 110/191 (57%), Gaps = 2/191 (1%)
Query: 1 SMFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAE 60
++ FL Y E QF SVK+ RSD+ E+M Y + GI+ Q SC TPQQNG E
Sbjct: 191 TVLTNFLVYTEKQFGKSVKVLRSDNGTEFMC--LASYFREHGIVHQTSCVGTPQQNGRVE 248
Query: 61 RKNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYS 120
RK+RH+L+V R++LF A +P +FW EA+ T +LINR P+ + SP+ L + +Y
Sbjct: 249 RKHRHILNVARAILFQASLPIQFWGEAVLTAAYLINRTPTSLHNGLSPYEILHNSKPNYE 308
Query: 121 DLHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFY 180
L FG C+VH +K K G +S C F+GY + KG+ +D+ F VSR+V F
Sbjct: 309 HLRVFGSACYVHRASRDKDKFGERSRLCVFIGYPFAQKGWKVFDMEKKEFLVSRDVVFRE 368
Query: 181 NQFMLHSISPD 191
+ F + + D
Sbjct: 369 DVFPYAATNTD 379
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 422 bits (1084), Expect = e-118
Identities = 228/528 (43%), Positives = 325/528 (61%), Gaps = 15/528 (2%)
Query: 255 RFSPDRYGSKHTSLTASLSSISIPTCYSQVVKDVRWIKAMNEEIQALQENLTWDIVSCPP 314
+ S +R+ S H + A++++ PT Y++ + D W +AM+ EI++L+ N T+ IV+ PP
Sbjct: 577 KMSCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPP 636
Query: 315 DIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAKMTTV------ 368
+ +G KWVY +K SDG++ RY ARLV L N Q+ G+DYDETFAPVAKM+TV
Sbjct: 637 GKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGV 696
Query: 369 --------HQMDVKNIFLHGDLAEDIYMTPPQGLFSSSKG-VCKLKRSLYGLKQAPRAWY 419
HQMDV N FLHGDL E++YM PQG VC+L +SLYGLKQAPR W+
Sbjct: 697 AAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWF 756
Query: 420 EKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHAS 479
K S+L + F+ S + SLF + V +L+YVDD++I+GS + + K L +
Sbjct: 757 SKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYLESC 816
Query: 480 FHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRD 539
FHMKDLG L YFLG+EV ++G +L Q KY +IS GL P PLE N K
Sbjct: 817 FHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLS 876
Query: 540 DGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGS 599
+L D YR+LVG L L +TRP++S+ V ++QFM +PR H A R++RYLK +
Sbjct: 877 TSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYLKSN 936
Query: 600 SHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSST 659
G+ S + +++ + D+++A CP TR S+T + + L + ISWK+KKQ +S+SS
Sbjct: 937 PGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTISRSSA 996
Query: 660 ESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVD 719
E+EYRAM E++WL+ L +LG + +++D+ SAI NPV HERTK +EVD
Sbjct: 997 EAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHERTKHVEVD 1056
Query: 720 CHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGKLMIFD 767
CH IRDA + +I+ V + Q+ADILTKA+ ++ + KL I D
Sbjct: 1057 CHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLRKLGILD 1104
Score = 146 bits (369), Expect = 4e-35
Identities = 71/186 (38%), Positives = 110/186 (58%), Gaps = 2/186 (1%)
Query: 4 KKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKN 63
K F+ VE QF + +K RSD+ E++ +EY HKGI + SC TP QNG ERK+
Sbjct: 396 KDFMALVERQFDTEIKTVRSDNGTEFLC--MREYFLHKGIAHETSCVGTPHQNGRVERKH 453
Query: 64 RHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSDLH 123
RH+L++ R+L F +++P +FW E + + +LINR PS++++ SP+ L+K YS L
Sbjct: 454 RHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLR 513
Query: 124 TFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYNQF 183
FG +C+ H + K +S +C F+GY + KG+ +D+ F VSR+V F +F
Sbjct: 514 VFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEF 573
Query: 184 MLHSIS 189
+S
Sbjct: 574 PYSKMS 579
>At3g25450 hypothetical protein
Length = 1343
Score = 419 bits (1078), Expect = e-117
Identities = 268/779 (34%), Positives = 405/779 (51%), Gaps = 32/779 (4%)
Query: 3 FKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERK 62
FK+F VE + + +K FR+D GE++SHEFQE+ +GI + P TPQQNG+ ER+
Sbjct: 533 FKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQQNGVVERR 592
Query: 63 NRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQL-DYSD 121
NR LL +TRS+L +P W EA+ + +LINR+ + + +P+ +FK + +
Sbjct: 593 NRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTPY-EVFKHKKPNVEH 651
Query: 122 LHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYN 181
L FGCV + + KL +S ++G K + D + VSR+V F N
Sbjct: 652 LRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPGSKAYRLLDPTKRRIFVSRDVVFDEN 711
Query: 182 QFMLHSISPDIND---------ITILPNFSIMPQSIERYKPEFTYVRKCIKQ----IPTA 228
+ + S D ++ N + I +PE T + + I A
Sbjct: 712 RSWMWQESSSETDKESGTFTITLSEFGNNGVTENDIST-EPEETEEAEINGEDENIIEEA 770
Query: 229 PPDTEPPPDPEPVEPRRSSRTSRAPDRFSPDRYGSKHTSLTASLSSISIPTCYSQVVKDV 288
+ EP RRS R P+ ++ + L+ P + + K
Sbjct: 771 ETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYVLCAEIEAEHLLLAVNDEPWDFKEANKSK 830
Query: 289 RWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNK 348
W A EEIQ++++N TW +V P K +G KWV+ +K NSDGS+N+Y ARLV
Sbjct: 831 EWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVKWVFKLKHNSDGSINKYKARLVAKGYV 890
Query: 349 QEYGIDYDETFAPVAKMTTV--------------HQMDVKNIFLHGDLAEDIYMTPPQGL 394
Q +G+D++E FAPVA++ TV H +DVK FLHG+L ED+Y++ P+G
Sbjct: 891 QRHGVDFEEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELREDVYVSQPEGF 950
Query: 395 FS--SSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLL 452
+ S + V KL ++LYGL+QAPRAW K L F SL+ + I+++
Sbjct: 951 TNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCHKEPSLYRKQEGENILVV 1010
Query: 453 LLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYAT 512
+YVDD+++TGS+ I K+ + F M DLG L Y+LG+EV + GI L Q +YA
Sbjct: 1011 AVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYAK 1070
Query: 513 YLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQ 572
++ AG+ N V+TP+ +++ + + D YR+ +G L L TRPD+S+ V
Sbjct: 1071 KILEEAGMSKCNTVNTPMIASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNVG 1130
Query: 573 QVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSV 632
+S+++ PR H AA+++I+RYL+G++ GL+F G L YSD++ D S
Sbjct: 1131 ILSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDGKST 1190
Query: 633 TSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTS 692
+L I+W S+KQ V+ SS E+E+ A A + IWL+ LAE+ E +
Sbjct: 1191 GGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQELLAEVIGTECEKVT 1250
Query: 693 LYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAV 751
+ DN SAI NPVFH R+K I H IR+ + I + HV Q ADILTKA+
Sbjct: 1251 IRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEVEHVPGVRQKADILTKAL 1309
>At4g23160 putative protein
Length = 1240
Score = 407 bits (1046), Expect = e-113
Identities = 215/490 (43%), Positives = 305/490 (61%), Gaps = 22/490 (4%)
Query: 257 SPDRYGSKHTSLTASLSSISIPTCYSQVVKDVRWIKAMNEEIQALQENLTWDIVSCPPDI 316
S ++ + S ++ P+ Y++ + + W AM++EI A++ TW+I + PP+
Sbjct: 65 SYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNK 124
Query: 317 KPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAKMT---------- 366
KP+GCKWVY +K NSDG++ RY ARLV Q+ GID+ ETF+PV K+T
Sbjct: 125 KPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISA 184
Query: 367 ----TVHQMDVKNIFLHGDLAEDIYMTPPQGLFSSSKG-------VCKLKRSLYGLKQAP 415
T+HQ+D+ N FL+GDL E+IYM P G +++ +G VC LK+S+YGLKQA
Sbjct: 185 IYNFTLHQLDISNAFLNGDLDEEIYMKLPPG-YAARQGDSLPPNAVCYLKKSIYGLKQAS 243
Query: 416 RAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQ 475
R W+ KF +L+GF F S + + F+ T+T + +L+YVDD++I +++A + LK Q
Sbjct: 244 RQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQ 303
Query: 476 LHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQSTNPVDTPLEVNVK 535
L + F ++DLG L YFLGLE+ ++ GI + Q KYA L+ GL P P++ +V
Sbjct: 304 LKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVT 363
Query: 536 YHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRY 595
+ G D YR+L+G L L ITR DISF V ++SQF +PR H AV +I+ Y
Sbjct: 364 FSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHY 423
Query: 596 LKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVS 655
+KG+ GLF+S +L +SDA++ C DTR S +CMFL +SLISWKSKKQ VS
Sbjct: 424 IKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVS 483
Query: 656 KSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FVANPVFHERTKL 715
KSS E+EYRA+ A E++WL F EL P ++PT L+ DNT+AI N VFHERTK
Sbjct: 484 KSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKH 543
Query: 716 IEVDCHSIRD 725
IE DCHS+R+
Sbjct: 544 IESDCHSVRE 553
>At1g59265 polyprotein, putative
Length = 1466
Score = 401 bits (1031), Expect = e-112
Identities = 222/514 (43%), Positives = 296/514 (57%), Gaps = 17/514 (3%)
Query: 267 SLTASLSSISIPTCYSQVVKDVRWIKAMNEEIQALQENLTWDIVSCPPD-IKPMGCKWVY 325
SL SL++ S P Q +KD RW AM EI A N TWD+V PP + +GC+W++
Sbjct: 945 SLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIF 1004
Query: 326 SVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAKMTTVH--------------QM 371
+ K NSDGSLNRY ARLV Q G+DY ETF+PV K T++ Q+
Sbjct: 1005 TKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1064
Query: 372 DVKNIFLHGDLAEDIYMTPPQGLFSSSKG--VCKLKRSLYGLKQAPRAWYEKFCSSLLGF 429
DV N FL G L +D+YM+ P G + VCKL+++LYGLKQAPRAWY + + LL
Sbjct: 1065 DVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTI 1124
Query: 430 CFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLH 489
F +S ++SLF+ + IV +L+YVDD++ITG+D + + L F +KD LH
Sbjct: 1125 GFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELH 1184
Query: 490 YFLGLEVHSTSKGIFLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLL 549
YFLG+E G+ L Q +Y L++ + + PV TP+ + K G L DP
Sbjct: 1185 YFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE 1244
Query: 550 YRQLVGSLN*LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIG 609
YR +VGSL L TRPDIS+ V ++SQFMH P HL A++RI+RYL G+ + G+F G
Sbjct: 1245 YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKG 1304
Query: 610 NYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAA 669
N L AYSDA+WAG D S + ++L ISW SKKQ V +SSTE+EYR++
Sbjct: 1305 NTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1364
Query: 670 CSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE 729
SE+ W+ L ELG T P +Y DN A ANPVFH R K I +D H IR+
Sbjct: 1365 SSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQS 1424
Query: 730 *LISLPHVSTQLQIADILTKAVPRPRHQFLVGKL 763
+ + HVST Q+AD LTK + R Q K+
Sbjct: 1425 GALRVVHVSTHDQLADTLTKPLSRTAFQNFASKI 1458
Score = 145 bits (366), Expect = 8e-35
Identities = 89/281 (31%), Positives = 136/281 (47%), Gaps = 15/281 (5%)
Query: 3 FKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERK 62
F F +E +FQ+ + F SD+ GE+++ EY GI S P+TP+ NGL+ERK
Sbjct: 571 FITFKNLLENRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERK 628
Query: 63 NRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSDL 122
+RH+++ +LL A IP +W A A V+LINRLP+ +++ +SPF LF +Y L
Sbjct: 629 HRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKL 688
Query: 123 HTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYNQ 182
FGC C+ L P+ +HKL +S QC F+GYS + ++C + +SR+V F N
Sbjct: 689 RVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENC 748
Query: 183 FMLHSISPDINDITILPNFSIMPQSIERYKPEFTYVRKCIKQIPTAPPDTEPPPDPEPVE 242
F N+ ++ + E + V +PT P P +P
Sbjct: 749 FP-------------FSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHH 795
Query: 243 PRRSSRTSRAPDRFSPDRYGSKHTSLTASLSSISIPTCYSQ 283
+ AP R S + +S ++S S PT Q
Sbjct: 796 AATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQ 836
>At1g58889 polyprotein, putative
Length = 1466
Score = 400 bits (1027), Expect = e-111
Identities = 221/514 (42%), Positives = 295/514 (56%), Gaps = 17/514 (3%)
Query: 267 SLTASLSSISIPTCYSQVVKDVRWIKAMNEEIQALQENLTWDIVSCPPD-IKPMGCKWVY 325
SL SL++ S P Q +KD RW AM EI A N TWD+V PP + +GC+W++
Sbjct: 945 SLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIF 1004
Query: 326 SVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAKMTTVH--------------QM 371
+ K NSDGSLNRY AR V Q G+DY ETF+PV K T++ Q+
Sbjct: 1005 TKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1064
Query: 372 DVKNIFLHGDLAEDIYMTPPQGLFSSSKG--VCKLKRSLYGLKQAPRAWYEKFCSSLLGF 429
DV N FL G L +D+YM+ P G + VCKL+++LYGLKQAPRAWY + + LL
Sbjct: 1065 DVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTI 1124
Query: 430 CFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLH 489
F +S ++SLF+ + IV +L+YVDD++ITG+D + + L F +KD LH
Sbjct: 1125 GFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELH 1184
Query: 490 YFLGLEVHSTSKGIFLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLL 549
YFLG+E G+ L Q +Y L++ + + PV TP+ + K G L DP
Sbjct: 1185 YFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE 1244
Query: 550 YRQLVGSLN*LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIG 609
YR +VGSL L TRPDIS+ V ++SQFMH P HL A++RI+RYL G+ + G+F G
Sbjct: 1245 YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKG 1304
Query: 610 NYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAA 669
N L AYSDA+WAG D S + ++L ISW SKKQ V +SSTE+EYR++
Sbjct: 1305 NTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1364
Query: 670 CSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE 729
SE+ W+ L ELG T P +Y DN A ANPVFH R K I +D H IR+
Sbjct: 1365 SSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQS 1424
Query: 730 *LISLPHVSTQLQIADILTKAVPRPRHQFLVGKL 763
+ + HVST Q+AD LTK + R Q K+
Sbjct: 1425 GALRVVHVSTHDQLADTLTKPLSRTAFQNFASKI 1458
Score = 145 bits (366), Expect = 8e-35
Identities = 89/281 (31%), Positives = 136/281 (47%), Gaps = 15/281 (5%)
Query: 3 FKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERK 62
F F +E +FQ+ + F SD+ GE+++ EY GI S P+TP+ NGL+ERK
Sbjct: 571 FITFKNLLENRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERK 628
Query: 63 NRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSDL 122
+RH+++ +LL A IP +W A A V+LINRLP+ +++ +SPF LF +Y L
Sbjct: 629 HRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKL 688
Query: 123 HTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYNQ 182
FGC C+ L P+ +HKL +S QC F+GYS + ++C + +SR+V F N
Sbjct: 689 RVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENC 748
Query: 183 FMLHSISPDINDITILPNFSIMPQSIERYKPEFTYVRKCIKQIPTAPPDTEPPPDPEPVE 242
F N+ ++ + E + V +PT P P +P
Sbjct: 749 FP-------------FSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHH 795
Query: 243 PRRSSRTSRAPDRFSPDRYGSKHTSLTASLSSISIPTCYSQ 283
+ AP R S + +S ++S S PT Q
Sbjct: 796 AATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQ 836
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,566,160
Number of Sequences: 26719
Number of extensions: 759792
Number of successful extensions: 4179
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3533
Number of HSP's gapped (non-prelim): 271
length of query: 770
length of database: 11,318,596
effective HSP length: 107
effective length of query: 663
effective length of database: 8,459,663
effective search space: 5608756569
effective search space used: 5608756569
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC144727.8