BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144727.5 + phase: 0
(256 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g28900 putative protein 157 4e-39
At4g10690 retrotransposon like protein 153 1e-37
At2g14930 pseudogene 147 5e-36
At1g53810 143 8e-35
At1g31210 putative reverse transcriptase 138 3e-33
At2g20460 putative retroelement pol polyprotein 138 3e-33
At1g26990 polyprotein, putative 138 3e-33
At2g16000 putative retroelement pol polyprotein 128 3e-30
At1g47650 hypothetical protein 127 4e-30
At1g44510 polyprotein, putative 126 1e-29
At4g02960 putative polyprotein of LTR transposon 123 1e-28
At1g59265 polyprotein, putative 123 1e-28
At1g58889 polyprotein, putative 123 1e-28
At2g13940 putative retroelement pol polyprotein 121 3e-28
At2g07420 putative retroelement pol polyprotein 121 3e-28
At2g07010 putative retroelement pol polyprotein 121 4e-28
At1g70010 hypothetical protein 119 2e-27
At4g16870 retrotransposon like protein 117 5e-27
At1g48710 hypothetical protein 114 7e-26
At3g61330 copia-type polyprotein 113 1e-25
>At4g28900 putative protein
Length = 1415
Score = 157 bits (398), Expect = 4e-39
Identities = 88/252 (34%), Positives = 133/252 (51%), Gaps = 15/252 (5%)
Query: 7 SSNVSRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDI------- 59
S S PW DSGA++H+T S+ L + Y G + + + + L IT +G
Sbjct: 286 SDQKSNPWVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSNQG 345
Query: 60 NSDFRNVLVSPGLASNLLSVGQLV-DNNCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFP 118
N R+VLV P + +LLSV +L D C + F G +V+++++ +++ KG + L+
Sbjct: 346 NLPLRDVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTKGTRHNDLYL 405
Query: 119 LQFISNHLSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVC--TASISCLV 176
L+ S E WH +LGHPN VL L + NK +V T+ C
Sbjct: 406 LENPKFMACYSSRQQATSDEVWHMRLGHPNQDVLQQLLR-----NKAIVISKTSHSLCDA 460
Query: 177 CKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFL 236
C++ K LPF S +S E +H D+WG +P+ S ++Y+V FID+YSRFTW Y L
Sbjct: 461 CQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPL 520
Query: 237 RSKSEVFSIVIT 248
R KS+ FS+ +T
Sbjct: 521 RLKSDFFSVFLT 532
>At4g10690 retrotransposon like protein
Length = 1515
Score = 153 bits (386), Expect = 1e-37
Identities = 85/246 (34%), Positives = 137/246 (55%), Gaps = 13/246 (5%)
Query: 11 SRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDINSDF------- 63
S W DS A+ H+T +++ L N +Y G+ + + +G+ L IT +G I +
Sbjct: 321 SHEWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTLPL 380
Query: 64 RNVLVSPGLASNLLSVGQLVDNN-CNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFI 122
+VLV PG+ +LLSV +L D+ C+ F V++++ + +++ +G K L+ L+ +
Sbjct: 381 EDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLKDV 440
Query: 123 SNHLSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKT-GLLGNKQVVCTASISCLVCKLAK 181
+ E WH++LGHPN VL HL KT ++ NK T+S C C++ K
Sbjct: 441 PFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNK----TSSNMCEACQMGK 496
Query: 182 SKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSE 241
LPF + +S E IH D+WG +P+ S ++Y+V FID+YSRFTW Y L+ KS+
Sbjct: 497 VCRLPFVASEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSD 556
Query: 242 VFSIVI 247
FS+ +
Sbjct: 557 FFSVFV 562
>At2g14930 pseudogene
Length = 1149
Score = 147 bits (371), Expect = 5e-36
Identities = 89/262 (33%), Positives = 134/262 (50%), Gaps = 18/262 (6%)
Query: 3 IHVKSSNVSRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDINSD 62
+H+ + W DS A+ H+T +S L + Y GN + +DGN L IT +G N
Sbjct: 303 LHITDVSDDSGWVPDSAATAHITNNSSRLQQMQPYLGNDTVMASDGNFLPITHIGSANLP 362
Query: 63 -------FRNVLVSPGLASNLLSVGQLV-DNNCNVNFSRAGCVVQEQVSGKVIAKGPKVG 114
++VLV P +A +LLSV +L D C+ F G +V+++ + KV+ KG
Sbjct: 363 STSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGVLVKDKATCKVLTKGSSTS 422
Query: 115 R-LFPLQFISNHLSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNK---QVVCTA 170
L+ L+ + V + E WH +LGHPN VL LL NK Q+ +
Sbjct: 423 EGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQ------LLANKKAIQINKST 476
Query: 171 SISCLVCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRF 230
S C C+L KS LPF + AS E +H D+WG +P++S ++Y+V FID+ SRF
Sbjct: 477 SKMCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFIDNRSRF 536
Query: 231 TWIYFLRSKSEVFSIVITISGY 252
W Y L+ KS+ S+ + +
Sbjct: 537 CWFYPLKHKSDFCSLFMKFQSF 558
>At1g53810
Length = 1522
Score = 143 bits (361), Expect = 8e-35
Identities = 91/244 (37%), Positives = 122/244 (49%), Gaps = 14/244 (5%)
Query: 14 WFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGD--INSD-----FRNV 66
W DS AS H+T + L YHG+ I +ADGN L IT G I S + V
Sbjct: 326 WIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGSIASSSGKIPLKEV 385
Query: 67 LVSPGLASNLLSVGQLV-DNNCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFISNH 125
LV P + +LLSV +L D C+V F + ++ + K++ G L+ L+
Sbjct: 386 LVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVMGRNRDGLYSLEEPKLQ 445
Query: 126 LSLPCNNVLNSYEDWHRKLGHPNSTVLSHLF--KTGLLGNKQVVCTASISCLVCKLAKSK 183
+ S E WHR+LGH N+ VL L K+ ++ NK V C C L KS
Sbjct: 446 VLYSTRQNSASSEVWHRRLGHANAEVLHQLASSKSIIIINKVVKTV----CEACHLGKST 501
Query: 184 TLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSEVF 243
LPF AS E IH D+WG SP +S ++Y+V FID YSRFTW Y L+ KS+ F
Sbjct: 502 RLPFMLSTFNASRPLERIHCDLWGPSPTSSVQGFRYYVVFIDHYSRFTWFYPLKLKSDFF 561
Query: 244 SIVI 247
S +
Sbjct: 562 STFV 565
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 138 bits (348), Expect = 3e-33
Identities = 85/254 (33%), Positives = 127/254 (49%), Gaps = 18/254 (7%)
Query: 7 SSNVSRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDINSDFRN- 65
S + + W DS A+ H+T S+ L + Y G+ + + DG L IT G N
Sbjct: 315 SDDTGKEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNG 374
Query: 66 ------VLVSPGLASNLLSVGQLVDNN-CNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFP 118
VLV P + +LLSV +L D+ C V F + + + KV+ GP+ L+
Sbjct: 375 KIPLNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYV 434
Query: 119 LQ---FISNHLSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLG-NKQVVCTASISC 174
L+ F++ + + C + E WH +LGH NS L HL + + NK S C
Sbjct: 435 LENQEFVALYSNRQC---AATEEVWHHRLGHANSKALQHLQNSKAIQINKS---RTSPVC 488
Query: 175 LVCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIY 234
C++ KS LPF R + + IH D+WG SP+ S+ KY+ F+DDYSR++W Y
Sbjct: 489 EPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFY 548
Query: 235 FLRSKSEVFSIVIT 248
L +KSE S+ I+
Sbjct: 549 PLHNKSEFLSVFIS 562
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 138 bits (347), Expect = 3e-33
Identities = 84/240 (35%), Positives = 131/240 (54%), Gaps = 11/240 (4%)
Query: 11 SRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGD--INSDF--RNV 66
S W +DSGA++H++ + L + + + + G N+ I+ VG IN D +NV
Sbjct: 439 SDTWVIDSGATHHVSHDRKLFQTLDTSIVSF-VNLPTGPNVRISGVGTVLINKDIILQNV 497
Query: 67 LVSPGLASNLLSVGQLV-DNNCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFISNH 125
L P NL+S+ L D V F + C +Q+ G + +G ++G L+ L S
Sbjct: 498 LFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDTQSPA 557
Query: 126 LSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVCKLAKSKTL 185
+S+ N + WH++LGHP+ + L L + +LG + S C VC LAK K L
Sbjct: 558 ISV---NAVVDVSVWHKRLGHPSFSRLDSLSE--VLGTTRHKNKKSAYCHVCHLAKQKKL 612
Query: 186 PFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSEVFSI 245
FPS + ++ FE++H DVWG + + YKYF+T +DD+SR TWIY L+SKS+V ++
Sbjct: 613 SFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTV 672
>At1g26990 polyprotein, putative
Length = 1436
Score = 138 bits (347), Expect = 3e-33
Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 14/246 (5%)
Query: 12 RPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDINS----DFRNVL 67
R W +DSGAS+H+T H + +++ +G+ + I G I NVL
Sbjct: 419 RAWVIDSGASHHVTHERNLYHTYKALD-RTFVRLPNGHTVKIEGTGFIQLTDALSLHNVL 477
Query: 68 VSPGLASNLLSVGQLVDN-NCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFISNHL 126
P NLLSV L V+F+ C++Q ++ KG +VG L+ L + +
Sbjct: 478 FIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLDKSLV 537
Query: 127 SLP-------CNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVCKL 179
+ C++V N E WH++LGHP+ + L +L KQ + S C VC L
Sbjct: 538 DVSSFPGKSVCSSVKNESEMWHKRLGHPSFAKIDTLSDVLMLP-KQKINKDSSHCHVCHL 596
Query: 180 AKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSK 239
+K K LPF S H FE++H D WG + + Y+YF+T +DD+SR TWIY L+ K
Sbjct: 597 SKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYLLKQK 656
Query: 240 SEVFSI 245
S+V ++
Sbjct: 657 SDVLTV 662
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 128 bits (322), Expect = 3e-30
Identities = 76/240 (31%), Positives = 125/240 (51%), Gaps = 11/240 (4%)
Query: 11 SRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDI--NSDF--RNV 66
S W +DSGA++H++ +L + + + G + I+ VG + N D +NV
Sbjct: 428 SATWVIDSGATHHVSHDRSLFSSLDT-SVLSAVNLPTGPTVKISGVGTLKLNDDILLKNV 486
Query: 67 LVSPGLASNLLSVGQLVDN-NCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFISNH 125
L P NL+S+ L D+ V F + C +Q+ + G+++ +G +V L+ L
Sbjct: 487 LFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDVGDQS 546
Query: 126 LSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVCKLAKSKTL 185
+S+ N + WHR+LGH + L + + LG + S C VC LAK + L
Sbjct: 547 ISV---NAVVDISMWHRRLGHASLQRLDAISDS--LGTTRHKNKGSDFCHVCHLAKQRKL 601
Query: 186 PFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSEVFSI 245
FP+ F+++H DVWG + + YKYF+T +DD+SR TW+Y L++KSEV ++
Sbjct: 602 SFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTV 661
>At1g47650 hypothetical protein
Length = 1409
Score = 127 bits (320), Expect = 4e-30
Identities = 77/250 (30%), Positives = 128/250 (50%), Gaps = 11/250 (4%)
Query: 1 MGIHVKSSNVSRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDI- 59
+G K + +DSGA +H++ NL + + + + G + I+ VG +
Sbjct: 319 LGFTPKGKGGDKSQVIDSGAIHHVSHDKSLFLNLDTSVVSA-VNLPAGPTVRISGVGTLR 377
Query: 60 -NSDF--RNVLVSPGLASNLLSVGQLVDN-NCNVNFSRAGCVVQEQVSGKVIAKGPKVGR 115
N D +N+L P NL+S+ L D+ V F + C +Q+ + +++ +G ++
Sbjct: 378 LNDDILLKNILFIPEFRLNLISISSLTDDIGSRVIFDKTSCEIQDPIKARMLGQGRRIAN 437
Query: 116 LFPLQFISNHLSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCL 175
L+ L +S+ N + WHR+LGH + L + + LG + S C
Sbjct: 438 LYVLDIEDPIVSV---NAVVDISMWHRRLGHASLQRLDVISDS--LGTTKPKNKGSDYCH 492
Query: 176 VCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYF 235
VC LAK + LPFPS + F+++H D+WG + + YKYF+T +DD+SR TWIY
Sbjct: 493 VCHLAKQRKLPFPSQNKVCNEIFDLLHIDIWGPFSVETVDGYKYFLTIVDDHSRATWIYL 552
Query: 236 LRSKSEVFSI 245
LR+KSEV ++
Sbjct: 553 LRNKSEVLTV 562
>At1g44510 polyprotein, putative
Length = 1459
Score = 126 bits (317), Expect = 1e-29
Identities = 81/248 (32%), Positives = 126/248 (50%), Gaps = 12/248 (4%)
Query: 5 VKSSNVSRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDI----- 59
+ S + PW LDSGA++H+T L Y+G + + IADG L+I G
Sbjct: 328 IGSPYAANPWLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLPSQ 387
Query: 60 NSDF--RNVLVSPGLASNLLSVGQLVDNN-CNVNFSRAGCVVQEQVSGKVIAKGPKVGRL 116
N D VL P + NL+SV +L + N +V F A V++ +G ++ +G L
Sbjct: 388 NRDLALHKVLYVPDIRKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDDL 447
Query: 117 F--PLQFISNHLSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISC 174
+ P+ + + WH +LGHP++++L+ L L V + SC
Sbjct: 448 YEWPVTNPPATALFTSPSPKTTLSSWHSRLGHPSASILNTLLSKFSLP-VSVASSNKTSC 506
Query: 175 LVCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIY 234
C + KS LPF + + +S+ E I +DVW SPI SH YKY++ +D Y+R+TW+Y
Sbjct: 507 SDCLINKSHKLPFATSSIHSSSPLEYIFTDVW-TSPIISHDNYKYYLVLVDHYTRYTWLY 565
Query: 235 FLRSKSEV 242
L+ KS+V
Sbjct: 566 PLQQKSQV 573
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 123 bits (308), Expect = 1e-28
Identities = 82/253 (32%), Positives = 125/253 (48%), Gaps = 22/253 (8%)
Query: 5 VKSSNVSRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDINS--- 61
V S + W LDSGA++H+T L Y G + IADG+ + IT G +
Sbjct: 301 VNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTS 360
Query: 62 ----DFRNVLVSPGLASNLLSVGQLVDNN-CNVNFSRAGCVVQEQVSGKVIAKGPKVGRL 116
D VL P + NL+SV +L + N +V F A V++ +G + +G L
Sbjct: 361 SRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDEL 420
Query: 117 FPLQFISNH----LSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTAS- 171
+ S+ + PC+ +S WH +LGHP+ +L+ + L V S
Sbjct: 421 YEWPIASSQAVSMFASPCSKATHS--SWHSRLGHPSLAILNSVISNHSLP----VLNPSH 474
Query: 172 --ISCLVCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSR 229
+SC C + KS +PF + +S E I+SDVW SPI S Y+Y+V F+D ++R
Sbjct: 475 KLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTR 533
Query: 230 FTWIYFLRSKSEV 242
+TW+Y L+ KS+V
Sbjct: 534 YTWLYPLKQKSQV 546
>At1g59265 polyprotein, putative
Length = 1466
Score = 123 bits (308), Expect = 1e-28
Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 22/253 (8%)
Query: 11 SRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDINS-------DF 63
S W LDSGA++H+T L Y G + +ADG+ + I+ G + +
Sbjct: 328 SNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNL 387
Query: 64 RNVLVSPGLASNLLSVGQLVD-NNCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFI 122
N+L P + NL+SV +L + N +V F A V++ +G + +G L+
Sbjct: 388 HNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIA 447
Query: 123 SNH----LSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTAS---ISCL 175
S+ + P + +S WH +LGHP ++L+ + L V S +SC
Sbjct: 448 SSQPVSLFASPSSKATHS--SWHARLGHPAPSILNSVISNYSLS----VLNPSHKFLSCS 501
Query: 176 VCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYF 235
C + KS +PF ++ E I+SDVW SPI SH Y+Y+V F+D ++R+TW+Y
Sbjct: 502 DCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYP 560
Query: 236 LRSKSEVFSIVIT 248
L+ KS+V IT
Sbjct: 561 LKQKSQVKETFIT 573
>At1g58889 polyprotein, putative
Length = 1466
Score = 123 bits (308), Expect = 1e-28
Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 22/253 (8%)
Query: 11 SRPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDINS-------DF 63
S W LDSGA++H+T L Y G + +ADG+ + I+ G + +
Sbjct: 328 SNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNL 387
Query: 64 RNVLVSPGLASNLLSVGQLVD-NNCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFI 122
N+L P + NL+SV +L + N +V F A V++ +G + +G L+
Sbjct: 388 HNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIA 447
Query: 123 SNH----LSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTAS---ISCL 175
S+ + P + +S WH +LGHP ++L+ + L V S +SC
Sbjct: 448 SSQPVSLFASPSSKATHS--SWHARLGHPAPSILNSVISNYSLS----VLNPSHKFLSCS 501
Query: 176 VCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYF 235
C + KS +PF ++ E I+SDVW SPI SH Y+Y+V F+D ++R+TW+Y
Sbjct: 502 DCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYP 560
Query: 236 LRSKSEVFSIVIT 248
L+ KS+V IT
Sbjct: 561 LKQKSQVKETFIT 573
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 121 bits (304), Expect = 3e-28
Identities = 82/242 (33%), Positives = 117/242 (47%), Gaps = 11/242 (4%)
Query: 16 LDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDINSD----FRNVLVSPG 71
LDSGAS+HMTG+ L N+ + ADG+ VG + NVL P
Sbjct: 403 LDSGASHHMTGTLSSLTNVVPVPPCP-VGFADGSKAFALSVGVLTLSNTVSLTNVLFVPS 461
Query: 72 LASNLLSVGQLV-DNNCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFISNHLSLPC 130
L L+SV +L+ C F+ C +Q++ S +I G + G ++ L ++ +
Sbjct: 462 LNCTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGEERGGVYYLTDVTP-AKIHT 520
Query: 131 NNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVCKLAKSKTLPFPSG 190
NV + WH++LGHP+ +VLS L L +K S SC VC AK FP
Sbjct: 521 ANVDSDQALWHQRLGHPSFSVLSSL----PLFSKTSSTVTSHSCDVCFRAKQTREVFPES 576
Query: 191 AHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSEVFSIVITIS 250
++ CF +IH DVWG + + YF+T +DDYSR W Y L KSEV ++
Sbjct: 577 INKTEECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFL 636
Query: 251 GY 252
Y
Sbjct: 637 KY 638
>At2g07420 putative retroelement pol polyprotein
Length = 1664
Score = 121 bits (304), Expect = 3e-28
Identities = 83/250 (33%), Positives = 117/250 (46%), Gaps = 22/250 (8%)
Query: 12 RPWFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDIN--SDFRNVLVS 69
+P +DSGAS+HM S+ + N+ GN + IA+G+ + + VGD++
Sbjct: 311 KPLIIDSGASHHMISDSKLISNIEPALGN--VVIANGDRIPVKGVGDLDLFDKSSKAFYM 368
Query: 70 PGLASNLLSVGQLV-DNNCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQF------I 122
P SNLLSV + D NC F Q+ + +V+ +G L+ L+ +
Sbjct: 369 PTFTSNLLSVKKATTDLNCYAIFGPNEVHFQDIETSRVLGQGVTKDGLYVLEDTKPSVPL 428
Query: 123 SNHLSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVCKLAKS 182
S+H S N + E WH +LGHP+S L L + N + C C L K
Sbjct: 429 SSHFSSILGNA--NSESWHARLGHPHSRALKLLLPSTSFKNDE--------CEACILGKH 478
Query: 183 KTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSEV 242
FP + CF++IHSDVW SP S +KYFVTFID+ S+FTW L SK V
Sbjct: 479 CKSVFPKSSTIYEKCFDLIHSDVW-TSPCLSRENHKYFVTFIDEKSKFTWFTLLPSKDRV 537
Query: 243 FSIVITISGY 252
Y
Sbjct: 538 LEAFTNFQTY 547
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 121 bits (303), Expect = 4e-28
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 11/242 (4%)
Query: 16 LDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGDINSD----FRNVLVSPG 71
LD+GAS+HMTG L N+ + + + ADG +G NVL P
Sbjct: 386 LDTGASHHMTGQLSLLTNIVTIP-SCSVGFADGRKTFAISMGTFKLSETVSLSNVLYVPA 444
Query: 72 LASNLLSVGQLVDN-NCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFISNHLSLPC 130
L +L+SV +LV C F+ CV+Q++ S +I G + ++ L + ++
Sbjct: 445 LNCSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDAAT-TTVHK 503
Query: 131 NNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVCKLAKSKTLPFPSG 190
++ + WH++LGHP+ +VLS L L + +S SC VC AK FP
Sbjct: 504 VDITTDHALWHQRLGHPSFSVLSSL----PLFSGSSCSVSSRSCDVCFRAKQTREVFPDS 559
Query: 191 AHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSEVFSIVITIS 250
++++++CF +IH DVWG + S YF+T +DD+SR W Y L +KSEV S++
Sbjct: 560 SNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFL 619
Query: 251 GY 252
Y
Sbjct: 620 AY 621
>At1g70010 hypothetical protein
Length = 1315
Score = 119 bits (298), Expect = 2e-27
Identities = 66/191 (34%), Positives = 104/191 (53%), Gaps = 11/191 (5%)
Query: 65 NVLVSPGLASNLLSVGQLVDN-NCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFIS 123
+VL P NLLSV L + C + F CV+Q+ ++ G +V L+ + S
Sbjct: 327 DVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIVDLDS 386
Query: 124 NHLSLPCNNV------LNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVC 177
LS P + + S++ WH++LGHP+ L + + LL + C VC
Sbjct: 387 --LSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPM--SSLLSFPKQKNNTDFHCRVC 442
Query: 178 KLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLR 237
++K K LPF S +++S F++IH D WG + +H Y+YF+T +DDYSR TW+Y LR
Sbjct: 443 HISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLR 502
Query: 238 SKSEVFSIVIT 248
+KS+V +++ T
Sbjct: 503 NKSDVLTVIPT 513
>At4g16870 retrotransposon like protein
Length = 1474
Score = 117 bits (294), Expect = 5e-27
Identities = 81/244 (33%), Positives = 129/244 (52%), Gaps = 13/244 (5%)
Query: 14 WFLDSGASNHMTGSSEYLHNLASYHGNQQIQIADGNNLSITDVGD--INSDFRN-----V 66
W LDSGA++H+T L Y+G+ + IADG +L IT G + S+ R+ V
Sbjct: 333 WLLDSGATHHITSDLNALALHQPYNGDD-VMIADGTSLKITKTGSTFLPSNARDLTLNKV 391
Query: 67 LVSPGLASNLLSVGQLVDNN-CNVNFSRAGCVVQEQVSGKVIAKGPKVGRLF--PLQFIS 123
L P + NL+SV +L + N +V F A V++ +G ++ +G L+ P+
Sbjct: 392 LYVPDIQKNLVSVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDELYEWPVTNPK 451
Query: 124 NHLSLPCNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVCKLAKSK 183
+ + WH +LGHP+S++L+ L L V + ++C C + KS
Sbjct: 452 ATALFTTPSPKTTLSSWHSRLGHPSSSILNTLISKFSLP-VSVSASNKLACSDCFINKSH 510
Query: 184 TLPFPSGAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSEVF 243
LPF + ++++ E I SDVW MSPI S YKY++ +D ++R+TW+Y L+ KS+V
Sbjct: 511 KLPFSISSIKSTSPLEYIFSDVW-MSPILSPDNYKYYLVLVDHHTRYTWLYPLQQKSQVK 569
Query: 244 SIVI 247
S I
Sbjct: 570 STFI 573
>At1g48710 hypothetical protein
Length = 1352
Score = 114 bits (284), Expect = 7e-26
Identities = 79/244 (32%), Positives = 118/244 (47%), Gaps = 16/244 (6%)
Query: 14 WFLDSGASNHMTGSSEYLHNL-ASYHGNQQIQIADGNNLSITDVGDI-----NSDFR--- 64
W+LDSGASNHM G L S GN + + D + + + G+I N D +
Sbjct: 335 WYLDSGASNHMCGRKSMFAELDESVRGN--VALGDESKMEVKGKGNILIRLKNGDHQFIS 392
Query: 65 NVLVSPGLASNLLSVGQLVDNNCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFISN 124
NV P + +N+LS+GQL++ ++ +++Q S + R+F L I N
Sbjct: 393 NVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLN-IRN 451
Query: 125 HLSLPCNNVLNSYEDW--HRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVCKLAKS 182
++ C + E W H + GH N L L + ++ + + C C L K
Sbjct: 452 DIA-QCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQ 510
Query: 183 KTLPFPS-GAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSE 241
+ FP + RA E+IH+DV G S + YF+ FIDD+SR TW+YFL+ KSE
Sbjct: 511 FKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570
Query: 242 VFSI 245
VF I
Sbjct: 571 VFEI 574
>At3g61330 copia-type polyprotein
Length = 1352
Score = 113 bits (282), Expect = 1e-25
Identities = 79/244 (32%), Positives = 118/244 (47%), Gaps = 16/244 (6%)
Query: 14 WFLDSGASNHMTGSSEYLHNL-ASYHGNQQIQIADGNNLSITDVGDI-----NSDFR--- 64
W+LDSGASNHM G L S GN + + D + + + G+I N D +
Sbjct: 335 WYLDSGASNHMCGRKSMFAELDESVRGN--VALGDESKMEVKGKGNILIRLKNGDHQFIS 392
Query: 65 NVLVSPGLASNLLSVGQLVDNNCNVNFSRAGCVVQEQVSGKVIAKGPKVGRLFPLQFISN 124
NV P + +N+LS+GQL++ ++ +++Q S + R+F L I N
Sbjct: 393 NVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLN-IRN 451
Query: 125 HLSLPCNNVLNSYEDW--HRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCLVCKLAKS 182
++ C + E W H + GH N L L + ++ + + C C L K
Sbjct: 452 DIA-QCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQ 510
Query: 183 KTLPFPS-GAHRASNCFEMIHSDVWGMSPIASHARYKYFVTFIDDYSRFTWIYFLRSKSE 241
+ FP + RA E+IH+DV G S + YF+ FIDD+SR TW+YFL+ KSE
Sbjct: 511 FKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570
Query: 242 VFSI 245
VF I
Sbjct: 571 VFEI 574
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,729,633
Number of Sequences: 26719
Number of extensions: 235485
Number of successful extensions: 809
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 112
length of query: 256
length of database: 11,318,596
effective HSP length: 97
effective length of query: 159
effective length of database: 8,726,853
effective search space: 1387569627
effective search space used: 1387569627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC144727.5