BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144726.3 - phase: 0
(151 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50670 putative protein 84 4e-17
At5g50570 putative protein 84 4e-17
At2g42200 squamosa promoter binding protein-like 9 60 6e-10
At3g57920 squamosa promoter-binding protein homolog 58 2e-09
At2g47070 squamosa promoter binding protein-like 1 57 5e-09
At1g69170 squamosa promoter binding protein-like 6 (spl6) 57 5e-09
At1g27360 squamosa-promoter binding protein-like 11 54 2e-08
At1g20980 putative SPL1-related protein 54 3e-08
At1g02065 squamosa promoter binding protein-like 8 (SPL8) 53 5e-08
At1g27370 squamosa-promoter binding protein-like 10 52 9e-08
At3g60030 squamosa promoter binding protein-like 12 52 1e-07
At5g43270 squamosa promoter binding protein-like 2 (emb|CAB56576.1) 51 2e-07
At1g53160 squamosa promoter binding protein-like 4 (spl4) 50 4e-07
At2g33810 squamosa-promoter binding protein-like 3 45 1e-05
At5g18830 squamosa promoter binding protein-like 7 44 3e-05
At3g15270 squamosa promoter binding protein-like 5 42 1e-04
At3g42100 putative protein 29 0.85
At5g19430 unknown protein 28 1.4
At1g16270 putative Ser/Thr protein kinase 28 1.4
At5g60450 auxin response factor 4 28 2.5
>At5g50670 putative protein
Length = 359
Score = 83.6 bits (205), Expect = 4e-17
Identities = 51/107 (47%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 51 EFFVDLKLG-HVGNSSAESG-------LTKSKDVGGFTKITSSSSSTSGSSKKARAINNG 102
+F DLKLG ++GNSS+ G L+K KD + + S S SSK+ R G
Sbjct: 39 DFSFDLKLGRNIGNSSSVFGDTEQVISLSKWKD----SALAKPEGSRSSSSKRTRGNGVG 94
Query: 103 T-QIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
T Q+ L DGC +D SN R YH RHKVC +HSKT VT+ GHKQRF
Sbjct: 95 TNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRF 141
>At5g50570 putative protein
Length = 359
Score = 83.6 bits (205), Expect = 4e-17
Identities = 51/107 (47%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 51 EFFVDLKLG-HVGNSSAESG-------LTKSKDVGGFTKITSSSSSTSGSSKKARAINNG 102
+F DLKLG ++GNSS+ G L+K KD + + S S SSK+ R G
Sbjct: 39 DFSFDLKLGRNIGNSSSVFGDTEQVISLSKWKD----SALAKPEGSRSSSSKRTRGNGVG 94
Query: 103 T-QIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
T Q+ L DGC +D SN R YH RHKVC +HSKT VT+ GHKQRF
Sbjct: 95 TNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRF 141
>At2g42200 squamosa promoter binding protein-like 9
Length = 375
Score = 59.7 bits (143), Expect = 6e-10
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 83 TSSSSSTSGSSKKARAINNGT--QIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVT 140
+ SSSS S+++ R +G QI +GC DL+N +GY+ RH+VC +HSKT +VT
Sbjct: 47 SGSSSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVT 106
Query: 141 LGGHKQRF 148
+ G +QRF
Sbjct: 107 VAGIEQRF 114
>At3g57920 squamosa promoter-binding protein homolog
Length = 354
Score = 57.8 bits (138), Expect = 2e-09
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 62 GNSSAESGLTKSKDVGGFTKITSSSSSTSGSSKKARAINNGTQIVSSLADGCQADLSNYR 121
G+SS ES + S + KI S S S + + + +GC+ DLSN +
Sbjct: 14 GSSSTESS-SLSGGLRFGQKIYFEDGSGSRSKNRVNTVRKSSTTARCQVEGCRMDLSNVK 72
Query: 122 GYHMRHKVCKLHSKTSQVTLGGHKQRF 148
Y+ RHKVC +HSK+S+V + G QRF
Sbjct: 73 AYYSRHKVCCIHSKSSKVIVSGLHQRF 99
>At2g47070 squamosa promoter binding protein-like 1
Length = 881
Score = 56.6 bits (135), Expect = 5e-09
Identities = 36/95 (37%), Positives = 49/95 (50%), Gaps = 24/95 (25%)
Query: 78 GFTKITSSSSSTSGSSKKARAI-----NNG--TQIVSSLADG-----------------C 113
G + +SSS S G+ KK RA+ NG T ++ +DG C
Sbjct: 52 GNSSNSSSSCSDEGNDKKRRAVAIQGDTNGALTLNLNGESDGLFPAKKTKSGAVCQVENC 111
Query: 114 QADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
+ADLS + YH RHKVC++HSK + T+GG QRF
Sbjct: 112 EADLSKVKDYHRRHKVCEMHSKATSATVGGILQRF 146
>At1g69170 squamosa promoter binding protein-like 6 (spl6)
Length = 405
Score = 56.6 bits (135), Expect = 5e-09
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 84 SSSSSTSGSSKKARAINNGTQIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGG 143
+SS + SKK+RA N +Q GC DLS+ + YH RH+VC+ HSKTS V + G
Sbjct: 100 TSSRGFALPSKKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNG 159
Query: 144 HKQRF 148
+QRF
Sbjct: 160 LEQRF 164
>At1g27360 squamosa-promoter binding protein-like 11
Length = 393
Score = 54.3 bits (129), Expect = 2e-08
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 48 CANEFFVDLKLG---HVGNSSAESGL-------TKSKDVGG-----FTKITSSSSSTSGS 92
C+N FV +K V +SAES L T S++ G + ++ + S
Sbjct: 100 CSNIDFVQVKAPTALEVSVASAESDLCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVV 159
Query: 93 SKKARAINNGTQIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
+ K++ + DGC+ DLS+ +GYH +HKVC+ HSK +V++ G ++RF
Sbjct: 160 AGKSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRF 215
>At1g20980 putative SPL1-related protein
Length = 1035
Score = 53.9 bits (128), Expect = 3e-08
Identities = 26/73 (35%), Positives = 41/73 (55%), Gaps = 2/73 (2%)
Query: 78 GFTKITSSSSSTSG--SSKKARAINNGTQIVSSLADGCQADLSNYRGYHMRHKVCKLHSK 135
G T + ++++T +KK R+ + G D C DLS+ + YH RHKVC++HSK
Sbjct: 88 GLTAVEETTTTTQNVRPNKKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSK 147
Query: 136 TSQVTLGGHKQRF 148
++ +G QRF
Sbjct: 148 ATKALVGKQMQRF 160
>At1g02065 squamosa promoter binding protein-like 8 (SPL8)
Length = 333
Score = 53.1 bits (126), Expect = 5e-08
Identities = 23/39 (58%), Positives = 27/39 (68%)
Query: 110 ADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
A+GC ADLS+ + YH RHKVC+ HSK S V G QRF
Sbjct: 190 AEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRF 228
>At1g27370 squamosa-promoter binding protein-like 10
Length = 396
Score = 52.4 bits (124), Expect = 9e-08
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 94 KKARAINNGTQIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
KK ++ Q+ DGC+ DLS+ + YH +H+VC+ HSK +V + G ++RF
Sbjct: 162 KKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRF 216
>At3g60030 squamosa promoter binding protein-like 12
Length = 927
Score = 52.0 bits (123), Expect = 1e-07
Identities = 24/64 (37%), Positives = 36/64 (55%), Gaps = 2/64 (3%)
Query: 87 SSTSGSSKKARAINNG--TQIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGH 144
++ G+ K + G ++ + D C ADLS + YH RHKVC++HSK + +GG
Sbjct: 104 NNIEGNGVKKTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGI 163
Query: 145 KQRF 148
QRF
Sbjct: 164 MQRF 167
>At5g43270 squamosa promoter binding protein-like 2 (emb|CAB56576.1)
Length = 419
Score = 51.2 bits (121), Expect = 2e-07
Identities = 25/67 (37%), Positives = 41/67 (60%), Gaps = 1/67 (1%)
Query: 82 ITSSSSSTSGSSKKARAINNGTQIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVTL 141
+T +SSS S KK+++I Q +GC DLS+ + YH +H++C+ HSK +V +
Sbjct: 144 VTLASSSVS-PVKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVV 202
Query: 142 GGHKQRF 148
G ++RF
Sbjct: 203 SGVERRF 209
>At1g53160 squamosa promoter binding protein-like 4 (spl4)
Length = 174
Score = 50.4 bits (119), Expect = 4e-07
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 98 AINNGTQIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
+IN G + D C AD+ + YH RHKVC++H+K S V L G QRF
Sbjct: 44 SINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRF 94
>At2g33810 squamosa-promoter binding protein-like 3
Length = 131
Score = 45.4 bits (106), Expect = 1e-05
Identities = 18/38 (47%), Positives = 24/38 (62%)
Query: 111 DGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
+ C AD+S + YH RHKVC+ H+K V + G QRF
Sbjct: 57 ESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRF 94
>At5g18830 squamosa promoter binding protein-like 7
Length = 801
Score = 43.9 bits (102), Expect = 3e-05
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 95 KARAINNGTQIVSSLADGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
K + + G+ + C+AD+S +GYH RH+VC + S V L G +R+
Sbjct: 125 KKKRVRGGSGVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRY 178
>At3g15270 squamosa promoter binding protein-like 5
Length = 181
Score = 42.4 bits (98), Expect = 1e-04
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 111 DGCQADLSNYRGYHMRHKVCKLHSKTSQVTLGGHKQRF 148
D C +L+ + Y+ RH+VC++H+K S T+ G +QRF
Sbjct: 66 DRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRF 103
>At3g42100 putative protein
Length = 1752
Score = 29.3 bits (64), Expect = 0.85
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 76 VGGFTKITSSSSSTSGSSKKARAINNGTQIVSSLADGCQAD 116
VG F +T S++ S S+KK + N G+ +VS LA QA+
Sbjct: 67 VGSF--LTPSNNQQSYSAKKTHSTNIGSTVVSGLASMVQAN 105
>At5g19430 unknown protein
Length = 255
Score = 28.5 bits (62), Expect = 1.4
Identities = 28/94 (29%), Positives = 48/94 (50%), Gaps = 11/94 (11%)
Query: 10 NVCSILYIVLFLNNDEV----FWRPWHDSIWNILYGFVCFSMCANEFFV---DLKLGHV- 61
+VC +L F+ D V + +HD ++I Y + +EF++ L++G+
Sbjct: 113 SVCLLLRASWFVPLDVVEQASYSHGYHDD-FDIPYDYEDEDDDLDEFYLHGSSLRIGNRR 171
Query: 62 --GNSSAESGLTKSKDVGGFTKITSSSSSTSGSS 93
GN SG +++ V ++ SSSSS+SGSS
Sbjct: 172 WGGNGFVRSGRQEARPVQRYSGSGSSSSSSSGSS 205
>At1g16270 putative Ser/Thr protein kinase
Length = 1147
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/55 (32%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
Query: 57 KLGHVGNSSAESGLTKSKDVGGFTKITSSSSSTSGSSKKARAINNGTQIVSSLAD 111
KLGH+ +S+ E+ L + + +G F SSS+S S ++K + G +I+ D
Sbjct: 128 KLGHI-HSAPEASLCQDRSLGNFHGYASSSASGSLTAKVKVLCSFGGKILPRPGD 181
>At5g60450 auxin response factor 4
Length = 788
Score = 27.7 bits (60), Expect = 2.5
Identities = 18/52 (34%), Positives = 26/52 (49%), Gaps = 9/52 (17%)
Query: 76 VGGFTKI---------TSSSSSTSGSSKKARAINNGTQIVSSLADGCQADLS 118
VGG T+I +SSSS +SGSS + + + + I S L C L+
Sbjct: 24 VGGGTRIDKGRLGISPSSSSSCSSGSSSSSSSTGSASSIYSELWHACAGPLT 75
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,436,348
Number of Sequences: 26719
Number of extensions: 130510
Number of successful extensions: 693
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 33
length of query: 151
length of database: 11,318,596
effective HSP length: 90
effective length of query: 61
effective length of database: 8,913,886
effective search space: 543747046
effective search space used: 543747046
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC144726.3