BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144722.14 - phase: 0
(220 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59720 copia-type reverse transcriptase-like protein 149 9e-37
At1g32590 hypothetical protein, 5' partial 122 1e-28
At3g60170 putative protein 120 4e-28
At1g58140 hypothetical protein 107 4e-24
At1g48710 hypothetical protein 107 4e-24
At3g61330 copia-type polyprotein 106 1e-23
At2g17490 putative retroelement pol polyprotein 104 3e-23
At4g07810 putative polyprotein 99 1e-21
At2g05960 putative retroelement pol polyprotein 97 5e-21
At2g15650 putative retroelement pol polyprotein 97 7e-21
At1g35050 putative protein 94 7e-20
At3g25450 hypothetical protein 90 8e-19
At1g47650 hypothetical protein 89 1e-18
At2g15870 putative retroelement pol polyprotein 87 5e-18
At2g05390 putative retroelement pol polyprotein 86 1e-17
At2g16000 putative retroelement pol polyprotein 86 2e-17
At4g04600 putative polyprotein 85 3e-17
At4g04290 putative reverse transcriptase 85 3e-17
At2g04820 putative retroelement pol polyprotein 80 6e-16
At1g59265 polyprotein, putative 80 8e-16
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 149 bits (377), Expect = 9e-37
Identities = 93/230 (40%), Positives = 129/230 (55%), Gaps = 38/230 (16%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKER 60
M + FEM+D+G MSY+L IEV+Q++ IFI Q YA E+LKKF M++ S P
Sbjct: 1052 MTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDD----SNP------ 1101
Query: 61 LCKDVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVLSRV 120
SL+G L YLT TR DILY V V+SR+M + FK AKR+L +
Sbjct: 1102 ---------------SLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYI 1146
Query: 121 LA--------ATTA-----VNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFH 167
+TT+ V A+WLR +L +L L Q E T++ VDN + IA++KN VFH
Sbjct: 1147 KGTVNFGLHYSTTSDYKLVVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFH 1206
Query: 168 GKTKHFSIKLFFLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLR 217
++KH + ++R+ DV L+Y KT DQ++ IFTK L F +R
Sbjct: 1207 DRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMR 1256
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 122 bits (306), Expect = 1e-28
Identities = 87/253 (34%), Positives = 126/253 (49%), Gaps = 36/253 (14%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKER 60
MM+ F M+DLG+M YFL +EV Q IFI QRKYA E++KK+ ME S+ P+ P ++
Sbjct: 1001 MMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQK 1060
Query: 61 LCKD--VEEQVDETLYQSLIGC---LMYLTTTR-------------------SDILYDVN 96
L K V ++ Q L+ L Y+ T SD DV+
Sbjct: 1061 LTKAGAVSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDSDYAGDVD 1120
Query: 97 VLSR-----FMNCAKESLFKGAKRVL-------SRVLAATTAVNQALWLRKVLTDLHLEQ 144
FM + K+ + + ++A+ QA+WLR VL ++ Q
Sbjct: 1121 DRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQ 1180
Query: 145 RETTEVMVDNHATIAISKNHVFHGKTKHFSIKLFFLRDVQKDGDVCLKYCKTEDQLSYIF 204
T V DN +TI +SKN V HG++KH ++ FLR++ K+G + L YC T DQ++ I
Sbjct: 1181 EGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIM 1240
Query: 205 TKALPTGRFELLR 217
TKA+ FE LR
Sbjct: 1241 TKAVKREVFEELR 1253
>At3g60170 putative protein
Length = 1339
Score = 120 bits (302), Expect = 4e-28
Identities = 60/118 (50%), Positives = 85/118 (71%), Gaps = 1/118 (0%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKER 60
MM FEMSDLG+M +FL IEV+Q +G IFICQR+YA E+L +F M+ ++ P+ P +
Sbjct: 1041 MMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESNAVKNPIVPGTK 1100
Query: 61 LCKDVE-EQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVL 117
L KD E+VDET+++ L+G LMYLT TR D++Y V ++SRFM+ + S + AKR+L
Sbjct: 1101 LTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMSHWLAAKRIL 1158
Score = 88.2 bits (217), Expect = 3e-18
Identities = 44/97 (45%), Positives = 61/97 (62%)
Query: 121 LAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLFFL 180
+AA Q +WLRKVL L E++ T + DN +TI +SK+ V HGK+KH ++ +L
Sbjct: 1231 IAAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSSTIQLSKHPVLHGKSKHIEVRFHYL 1290
Query: 181 RDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLR 217
RD+ V L+YC TEDQ++ IFTK L +FE LR
Sbjct: 1291 RDLVNGDVVKLEYCPTEDQVADIFTKPLKLEQFEKLR 1327
>At1g58140 hypothetical protein
Length = 1320
Score = 107 bits (268), Expect = 4e-24
Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPM-CPKE 59
M + FEM+D+G MSY+L IEV+Q++ IFI Q YA E+LKKF M++ + TPM C +
Sbjct: 1020 MTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIK 1079
Query: 60 RLCKDVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVL 117
K+ E VD T ++SL+G L YLT TR DILY V V+SR+M + FK AKR+L
Sbjct: 1080 LSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRIL 1137
Score = 85.1 bits (209), Expect = 3e-17
Identities = 42/97 (43%), Positives = 62/97 (63%)
Query: 121 LAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLFFL 180
+AAT+ V A+WLR +L +L L Q E T++ VDN + IA++KN VFH ++KH + ++
Sbjct: 1208 VAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYI 1267
Query: 181 RDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLR 217
R+ DV L+Y KT DQ++ IFTK L F +R
Sbjct: 1268 RECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMR 1304
>At1g48710 hypothetical protein
Length = 1352
Score = 107 bits (268), Expect = 4e-24
Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPM-CPKE 59
M + FEM+D+G MSY+L IEV+Q++ IFI Q YA E+LKKF M++ + TPM C +
Sbjct: 1052 MTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIK 1111
Query: 60 RLCKDVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVL 117
K+ E VD T ++SL+G L YLT TR DILY V V+SR+M + FK AKR+L
Sbjct: 1112 LSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRIL 1169
Score = 85.1 bits (209), Expect = 3e-17
Identities = 42/97 (43%), Positives = 62/97 (63%)
Query: 121 LAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLFFL 180
+AAT+ V A+WLR +L +L L Q E T++ VDN + IA++KN VFH ++KH + ++
Sbjct: 1240 VAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYI 1299
Query: 181 RDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLR 217
R+ DV L+Y KT DQ++ IFTK L F +R
Sbjct: 1300 RECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMR 1336
>At3g61330 copia-type polyprotein
Length = 1352
Score = 106 bits (264), Expect = 1e-23
Identities = 58/118 (49%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPM-CPKE 59
M + FEM+D+G MSY+L IEV+Q++ IFI Q YA E+LKKF +++ + TPM C +
Sbjct: 1052 MTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIK 1111
Query: 60 RLCKDVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVL 117
K+ E VD T ++SL+G L YLT TR DILY V V+SR+M + FK AKR+L
Sbjct: 1112 LSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRIL 1169
Score = 84.3 bits (207), Expect = 4e-17
Identities = 41/97 (42%), Positives = 61/97 (62%)
Query: 121 LAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLFFL 180
+AAT+ V A+WLR +L +L L Q E T++ VDN + IA++KN VFH ++KH + ++
Sbjct: 1240 VAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYI 1299
Query: 181 RDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLR 217
R+ DV L+Y KT DQ++ FTK L F +R
Sbjct: 1300 RECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKMR 1336
>At2g17490 putative retroelement pol polyprotein
Length = 822
Score = 104 bits (260), Expect = 3e-23
Identities = 54/117 (46%), Positives = 79/117 (67%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKER 60
M FEMSDLG ++YFL +E+ Q IF+ Q YA ++LKKFNME+ K MSTP+ P+ +
Sbjct: 678 MKNEFEMSDLGLLNYFLGMEIVQSLEGIFLSQECYARKLLKKFNMEDSKIMSTPLLPQRK 737
Query: 61 LCKDVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVL 117
++ E D +Y+SL+G L+YLT+TR ++++ + LSR++ K FK AKRVL
Sbjct: 738 DQEEDESLADSKVYRSLVGGLLYLTSTRPNLMFFASYLSRYLKEPKIKHFKEAKRVL 794
>At4g07810 putative polyprotein
Length = 1366
Score = 99.4 bits (246), Expect = 1e-21
Identities = 75/247 (30%), Positives = 119/247 (47%), Gaps = 33/247 (13%)
Query: 5 FEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKERLCK- 63
F++ DLG+ YFL +E+ + I I QRKYA E+L++F K + TPM +L +
Sbjct: 1111 FKLKDLGQKRYFLGLEIARSKEGISISQRKYALELLEEFGFLGCKPVPTPMELNLKLSQE 1170
Query: 64 DVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVL------ 117
D +D + Y+ LIG L+YLT TR DI + VN L+++M+ +E A+R+L
Sbjct: 1171 DGALLLDASHYRKLIGRLVYLTVTRPDICFAVNKLNQYMSAPREPHLMAARRILRYLKND 1230
Query: 118 -----------------------SRVLAATTAVNQALWLRKVLTD--LHLEQRETTEVMV 152
S ++ +++ WL K+ T+ L L +T V
Sbjct: 1231 PGQGVFYPASSTLTFRAFADADWSNCPESSISISIVFWL-KLSTEAWLVLSLPDTIFVYY 1289
Query: 153 DNHATIAISKNHVFHGKTKHFSIKLFFLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGR 212
D+ + + I+KN VFH TK+F + +R+ G + + TE + + TK L R
Sbjct: 1290 DDESALHIAKNSVFHESTKNFLHDIHVVREKVAVGFIKTLHVDTEHNIVDLLTKPLTALR 1349
Query: 213 FELLREK 219
F L K
Sbjct: 1350 FNYLLSK 1356
>At2g05960 putative retroelement pol polyprotein
Length = 1200
Score = 97.4 bits (241), Expect = 5e-21
Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 7/222 (3%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKER 60
M + FEMSDLG ++Y+L IEV Q+ I + Q +YA ++L++ + KS+ PM
Sbjct: 955 MSKNFEMSDLGRLTYYLGIEVTQEEDGIILKQERYAKKILEEAGINECKSILVPMNSGLE 1014
Query: 61 LCKDVEEQ-VDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKES---LFKGAKRV 116
L K ++E+ +D Y+ IGCL Y+ R + + R++ KG K
Sbjct: 1015 LSKALDEKSIDGQQYRRSIGCLRYMQDPRESHGAALKQVLRYLQGTTGYGLVFKKGDKTG 1074
Query: 117 LSRVLAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIK 176
L A+ +V+ +L ++ E + VDN + IA++KN VFHG++KH K
Sbjct: 1075 LVGYSDASHSVDAD---DDLLAEVIGTPCERVTLRVDNKSAIALTKNPVFHGRSKHIHRK 1131
Query: 177 LFFLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLRE 218
F+R+ ++G V +++ Q + I TKAL +F+ +R+
Sbjct: 1132 YHFIRECVENGQVSVEHVPGVKQRANILTKALAKIKFKDMRD 1173
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 97.1 bits (240), Expect = 7e-21
Identities = 51/123 (41%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCP--- 57
M FEM+DLG ++YFL +EV Q + IF+ Q KYAN+++ KF M+ KS+STP+ P
Sbjct: 1051 MKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLTPQGK 1110
Query: 58 KERLCKDVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVL 117
++ + D +E D T Y+ ++G L+YL +R D++Y + LSR+M+ ++ AKRVL
Sbjct: 1111 RKGVEGDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQEAKRVL 1170
Query: 118 SRV 120
V
Sbjct: 1171 RYV 1173
Score = 91.3 bits (225), Expect = 4e-19
Identities = 44/99 (44%), Positives = 63/99 (63%)
Query: 121 LAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLFFL 180
+A A NQA+WL+++ D L+ +E ++ DN + IAI +N V H +TKH IK F+
Sbjct: 1241 IAVCAATNQAIWLQRLFEDFGLKFKEGIPILCDNKSAIAIGRNPVQHRRTKHIEIKYHFV 1300
Query: 181 RDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLREK 219
R+ + G + L+YCK EDQL+ + TKAL RFE LR K
Sbjct: 1301 REAEHKGLIQLEYCKGEDQLADVLTKALSVSRFEGLRRK 1339
>At1g35050 putative protein
Length = 450
Score = 93.6 bits (231), Expect = 7e-20
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 41/225 (18%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKE- 59
M + FEM DLG+ + L +++E IF+ Q Y ++LK+FNM+ +STPM +
Sbjct: 240 MKEEFEMKDLGKTKFCLGLQIEHFQDGIFVHQSNYTKKILKRFNMDKANPLSTPMVNRSL 299
Query: 60 -------RLCKDVEEQVDETL-YQSLIGCLMYLTT-TRSDILYDVNVLSRFMNCAKESLF 110
R C+D E+ + + Y S IG LMYL TR DI + N+L+R M
Sbjct: 300 NVENDPFRPCEDNEDFLGPKVPYMSAIGGLMYLANCTRPDIAFATNLLARSM-------- 351
Query: 111 KGAKRVLSRVLAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIA-ISKNHVFHGK 169
T + +A L + +RE T + DN A +A I + ++ +
Sbjct: 352 -------------TNHIQEASGL--------VIKREPTRIYEDNDACVAQIKEGYIKSDR 390
Query: 170 TKHFSIKLF-FLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRF 213
TKH + F + + ++K+ +V ++Y ++ D + +F KALPT F
Sbjct: 391 TKHIPPRFFSYTQKLEKNKEVEVQYVRSSDNAADLFIKALPTSTF 435
>At3g25450 hypothetical protein
Length = 1343
Score = 90.1 bits (222), Expect = 8e-19
Identities = 52/127 (40%), Positives = 79/127 (61%), Gaps = 2/127 (1%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKER 60
M+ FEMSDLG+++Y+L IEV Q I + Q +YA ++L++ M +++TPM
Sbjct: 1034 MVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMIASLE 1093
Query: 61 LCK-DVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVLSR 119
L K E+++DET Y+ IGCL YL TR D+ Y+V +LSR++ +ES K++L R
Sbjct: 1094 LSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQIL-R 1152
Query: 120 VLAATTA 126
L TT+
Sbjct: 1153 YLQGTTS 1159
Score = 68.9 bits (167), Expect = 2e-12
Identities = 35/98 (35%), Positives = 61/98 (61%)
Query: 121 LAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLFFL 180
+AAT A QA+WL+++L ++ + E + VDN + IA++KN VFHG++KH + F+
Sbjct: 1222 MAATEAAKQAIWLQELLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFI 1281
Query: 181 RDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLRE 218
R+ ++G + +++ Q + I TKAL +F +RE
Sbjct: 1282 RECVENGQIEVEHVPGVRQKADILTKALGKIKFLEMRE 1319
>At1g47650 hypothetical protein
Length = 1409
Score = 89.4 bits (220), Expect = 1e-18
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKER 60
+ Q F++ DLG++ YFL +E+ + I ICQRKYA E+L M N K +S PM P +
Sbjct: 949 LQQRFKLRDLGDLKYFLGLEIARTEAGISICQRKYALELLASTGMVNCKPVSVPMIPNVK 1008
Query: 61 LCK-DVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVLSR 119
+ K D + D Y+ ++G LMYLT TR DI + VN L +F + + S + A RVL
Sbjct: 1009 MMKTDGDLLDDREQYRRIVGKLMYLTITRLDITFAVNKLCQFSSAPRTSHLQAAYRVLQY 1068
Query: 120 V 120
+
Sbjct: 1069 I 1069
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 119 RVLAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLF 178
R LA T + +WL +L L + D+ I I+ N VFH +TKH +
Sbjct: 1137 RALALVTC--ELVWLHTLLMSLKASYLVPV-LYSDSTTAIYIATNPVFHERTKHIELDCH 1193
Query: 179 FLRDVQKDGDVCLKYCKTEDQLS 201
+R+ +G++ L + +TEDQ S
Sbjct: 1194 TVREKLDNGELKLLHVRTEDQPS 1216
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 87.4 bits (215), Expect = 5e-18
Identities = 48/121 (39%), Positives = 69/121 (56%), Gaps = 1/121 (0%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKER 60
+ +F++ DLG++ YFL +E+ + I +CQRKYA E+L M N K +S PM P +
Sbjct: 968 LQNLFKLRDLGDLKYFLGLEITRTEAGISLCQRKYALELLASTGMINCKLVSVPMVPNLK 1027
Query: 61 LCK-DVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVLSR 119
L K D E D Y+ ++G LMYLT TR DI + VN L +F + + A RVL
Sbjct: 1028 LMKVDGELLEDREQYRRIVGTLMYLTITRPDITFAVNKLCQFSYAPTTAHLQAAHRVLQY 1087
Query: 120 V 120
+
Sbjct: 1088 I 1088
Score = 54.7 bits (130), Expect = 4e-08
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 119 RVLAATTAVNQALWLRKVLTDLHLEQRETTEVMV-DNHATIAISKNHVFHGKTKHFSIKL 177
R LA T + +WL +L L T ++ D+ A I I+ N VFH +TKH I
Sbjct: 1156 RALALATC--ELVWLHTLLASL--TAATTIPILFSDSTAAIYIAINPVFHERTKHIEIDC 1211
Query: 178 FFLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLREK 219
+R+ DG++ L + +TEDQ++ I TK L +FE L+ K
Sbjct: 1212 HTVREKIDDGELKLLHVRTEDQVADIMTKPLFPNQFEHLKSK 1253
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 86.3 bits (212), Expect = 1e-17
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 4/132 (3%)
Query: 5 FEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKERLCKD 64
FEMSDLG+++Y+L IEV + I + Q +YA +++++ M N + PM LCK
Sbjct: 999 FEMSDLGQLTYYLGIEVLHRKNGIILRQERYAMKIIEEAGMSNCNPVLIPMAAGLELCKA 1058
Query: 65 VEEQ-VDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVLSRVLAA 123
EE+ + E Y+ +IGCL Y+ TR D+ Y V VLSR++ +ES K+VL R L
Sbjct: 1059 QEEKCITERDYRRMIGCLRYIVHTRPDLSYCVGVLSRYLQQPRESHGNALKQVL-RYLKG 1117
Query: 124 TTAVNQALWLRK 135
T ++ L+L++
Sbjct: 1118 T--MSHGLYLKR 1127
Score = 62.4 bits (150), Expect = 2e-10
Identities = 34/115 (29%), Positives = 61/115 (52%)
Query: 104 CAKESLFKGAKRVLSRVLAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKN 163
C+++ + +AAT A QA+WL+ + ++ E + VDN + IA++KN
Sbjct: 1166 CSQKQQVVALSSCEAEFMAATEAAKQAIWLQDLFAEVCGTTSEKVMIRVDNKSAIALTKN 1225
Query: 164 HVFHGKTKHFSIKLFFLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLRE 218
VFHG++KH + F+R+ ++ V + + +Q + I TK L +F +RE
Sbjct: 1226 LVFHGRSKHIHRRYHFIRECVENNLVEVDHVPGVEQRADILTKPLGRIKFREMRE 1280
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 85.5 bits (210), Expect = 2e-17
Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 3 QVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKERLC 62
Q F++ DLG++ YFL +EV + I ICQRKYA E+L+ M K +S PM P ++
Sbjct: 1160 QRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMR 1219
Query: 63 KDVEEQVDE-TLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVLSRV 120
KD + +++ Y+ ++G LMYLT TR DI + VN L +F + + + A RVL +
Sbjct: 1220 KDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYI 1278
Score = 50.8 bits (120), Expect = 5e-07
Identities = 34/101 (33%), Positives = 53/101 (51%), Gaps = 3/101 (2%)
Query: 119 RVLAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLF 178
R LA T + +WL +L L + D+ A I I+ N VFH +TKH +
Sbjct: 1346 RALALATC--EMVWLFTLLVSLQASP-PVPILYSDSTAAIYIATNPVFHERTKHIKLDCH 1402
Query: 179 FLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLREK 219
+R+ +G++ L + +TEDQ++ I TK L +FE L+ K
Sbjct: 1403 TVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSK 1443
>At4g04600 putative polyprotein
Length = 922
Score = 85.1 bits (209), Expect = 3e-17
Identities = 60/221 (27%), Positives = 114/221 (51%), Gaps = 28/221 (12%)
Query: 5 FEMSDLGEMSYFLVIEVEQ--KNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKERLC 62
FEM D+G S L I++E+ + G + + Q KY +++++F M + K +STP+ +L
Sbjct: 709 FEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLS 768
Query: 63 --KDVEEQVDETL--YQSLIGCLMY-LTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVL 117
++ +E VD + Y S +G +MY + TR D++Y + ++ N ++ L+K +
Sbjct: 769 AVRNNDESVDTEVCPYSSAVGSVMYAMIGTRPDVVYALGLV----NGSEGGLYKRKR--- 821
Query: 118 SRVLAATTAVNQALWLRKVLTDLHLEQRETTEVMV----DNHATIAISKNHVFHGKTKHF 173
++ W+ L++R + V N++ +SKN+ FH +TKH
Sbjct: 822 ----------HEDTWICDSDYVADLDKRRSISGYVFTVGGNNSASCMSKNNAFHERTKHI 871
Query: 174 SIKLFFLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFE 214
+K +F+RD+ + G+V ++ T + TK +P +FE
Sbjct: 872 DVKFYFIRDIIEAGEVEVEKIHTSRNPVDMLTKVIPLHKFE 912
>At4g04290 putative reverse transcriptase
Length = 403
Score = 85.1 bits (209), Expect = 3e-17
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 23/223 (10%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPM----C 56
+ VF++ DLGE+ YFL IEV + +F+ QRKY ++L + K TP+
Sbjct: 191 LKSVFDIKDLGELKYFLGIEVCRSKEGLFLSQRKYTLDLLAQVGKLGVKPAKTPLEDDYK 250
Query: 57 PKERLCKDVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRV 116
K + D + D T Y+ L+G L+ T RS V++ S E+ ++ +++
Sbjct: 251 AKRKGEHDNKPFEDATRYRRLVGNLV---TWRSKKQKVVSLSSA------EAEYRAMRKL 301
Query: 117 LSRVLAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIK 176
+ ++ WL+ +L D ++ + DN A I I+ N VFH +TKH +
Sbjct: 302 TTELM----------WLKALLKDFGIDTPNPIPMHCDNQAAIHIASNSVFHERTKHIEVD 351
Query: 177 LFFLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLREK 219
+R+ + G + Y ++E+QL +FTK T E + K
Sbjct: 352 CHKVREQVQLGVILPHYTESEEQLVDVFTKGASTKVCEYIHNK 394
>At2g04820 putative retroelement pol polyprotein
Length = 387
Score = 80.5 bits (197), Expect = 6e-16
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 5 FEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKERLCKD 64
F + DLG +SYFL IE + + + QRKY ++L K +M + K +STPM +L
Sbjct: 96 FSLKDLGALSYFLGIEATRTKKGLHLMQRKYITDLLAKTHMLDAKPISTPMATTPKLSLH 155
Query: 65 VEEQVDETL-YQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVLSRVLAA 123
+D+ Y+ +IG L YL+ TR DI + VN LS+FM+ + ++ AKRVL R LA
Sbjct: 156 SGTILDDAKEYRMIIGSLQYLSFTRPDIAFVVNRLSQFMHKPTDEHWQAAKRVL-RYLAG 214
Query: 124 T 124
T
Sbjct: 215 T 215
Score = 48.5 bits (114), Expect = 3e-06
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 122 AATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLFFLR 181
A ++ W+ +L+++ + V DN + N VFH K KH ++ F+R
Sbjct: 281 AVANTASELQWICSLLSEMGISLPVAPVVYCDNMGATYLCANPVFHSKMKHVALDYHFVR 340
Query: 182 DVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLREK 219
+ G + + + T+DQL+ TK L RF+ L K
Sbjct: 341 GNIQTGALRVSHLSTKDQLADALTKPLHRPRFQELNYK 378
>At1g59265 polyprotein, putative
Length = 1466
Score = 80.1 bits (196), Expect = 8e-16
Identities = 50/136 (36%), Positives = 75/136 (54%), Gaps = 4/136 (2%)
Query: 1 MMQVFEMSDLGEMSYFLVIEVEQKNGDIFICQRKYANEMLKKFNMENRKSMSTPMCPKER 60
+ Q F + D E+ YFL IE ++ + + QR+Y ++L + NM K ++TPM P +
Sbjct: 1171 LSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPK 1230
Query: 61 LCK-DVEEQVDETLYQSLIGCLMYLTTTRSDILYDVNVLSRFMNCAKESLFKGAKRVLSR 119
L + D T Y+ ++G L YL TR DI Y VN LS+FM+ E + KR+L R
Sbjct: 1231 LSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRIL-R 1289
Query: 120 VLAATTAVNQALWLRK 135
LA T N ++L+K
Sbjct: 1290 YLAGTP--NHGIFLKK 1303
Score = 47.8 bits (112), Expect = 5e-06
Identities = 29/101 (28%), Positives = 48/101 (46%), Gaps = 2/101 (1%)
Query: 119 RVLAATTAVNQALWLRKVLTDLHLEQRETTEVMVDNHATIAISKNHVFHGKTKHFSIKLF 178
R +A T++ Q W+ +LT+L + + DN + N VFH + KH +I
Sbjct: 1359 RSVANTSSEMQ--WICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYH 1416
Query: 179 FLRDVQKDGDVCLKYCKTEDQLSYIFTKALPTGRFELLREK 219
F+R+ + G + + + T DQL+ TK L F+ K
Sbjct: 1417 FIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASK 1457
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,500,375
Number of Sequences: 26719
Number of extensions: 171802
Number of successful extensions: 812
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 179
length of query: 220
length of database: 11,318,596
effective HSP length: 95
effective length of query: 125
effective length of database: 8,780,291
effective search space: 1097536375
effective search space used: 1097536375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144722.14