BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144656.5 + phase: 0 /pseudo
         (2301 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g43190 unknown protein                                              31  9.6

>At5g43190 unknown protein
          Length = 403

 Score = 30.8 bits (68), Expect = 9.6
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 21/124 (16%)

Query: 359 EPRNLGTTSQERKNTMLMW*PMEEPNKLIQSTNI------SLPSHLLPMLFNHQIVSLDS 412
           +P  + TT+    +T L W P   P  L   TN+      +LP+HLL             
Sbjct: 10  KPITITTTTTTTASTFLYWSPESSPTALSSPTNLDPNIWSNLPNHLL------------- 56

Query: 413 HNILNKILNNNIPNQHTSNAHINNNPINNNSLDHKKCKLTQSLLLTQSYSQDYSERI*FK 472
            +IL+ +    +    + + H+ +  ++ + +      L   LLL  S+ Q ++    F 
Sbjct: 57  EHILSLLPFKTLLTLRSISRHLRSLILSPSFISDHSFSLPSFLLL--SHPQSFNSFPLFN 114

Query: 473 PSLL 476
           P+L+
Sbjct: 115 PNLI 118


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.358    0.158    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,820,319
Number of Sequences: 26719
Number of extensions: 1636531
Number of successful extensions: 6351
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6350
Number of HSP's gapped (non-prelim): 2
length of query: 2301
length of database: 11,318,596
effective HSP length: 115
effective length of query: 2186
effective length of database: 8,245,911
effective search space: 18025561446
effective search space used: 18025561446
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 68 (30.8 bits)