BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144656.4 + phase: 0
(472 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 32 0.76
At4g32615 putative protein 31 1.3
At5g62640 unknown protein 30 2.2
At5g64360 unknown protein 30 2.9
At1g17760 unknown protein 30 2.9
At5g01570 putative protein 30 3.8
At5g13950 unknown protein 29 4.9
At5g60030 KED - like protein 29 6.4
At5g52550 unknown protein 28 8.4
At5g13340 putative protein 28 8.4
At5g09540 putative protein 28 8.4
At3g61150 homeobox protein 28 8.4
At1g68790 putative nuclear matrix constituent protein 1 (NMCP1) 28 8.4
>At1g20390 hypothetical protein
Length = 1791
Score = 32.0 bits (71), Expect = 0.76
Identities = 23/72 (31%), Positives = 40/72 (54%), Gaps = 14/72 (19%)
Query: 98 GLEPGPK-------IPAIANALHLE-----IADIKNKFITRAGLQCLP-YNFLYQKATIC 144
G+E PK +P+ NA ++ IA + N+FI+R+ +CLP YN L ++A
Sbjct: 985 GIEANPKQIRAILELPSPRNAREVQRLTGRIAAL-NRFISRSTDKCLPFYNLLKRRAQFD 1043
Query: 145 FERSETDAFEAI 156
+++ +AFE +
Sbjct: 1044 WDKDSEEAFEKL 1055
>At4g32615 putative protein
Length = 315
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/69 (34%), Positives = 39/69 (55%), Gaps = 6/69 (8%)
Query: 395 ERRENSMWEVKYRKKKQEYDTVKNLLDQQ--IQANCKEKNENARLK---ASIQRKEDFLD 449
E++EN+ E K KKK++ D K L + Q +++N +E+A + +SI KE L
Sbjct: 208 EKKENTTGESKASKKKKKKDKQKELKESQSEVKSNSDAASESAEQEESSSSIDVKER-LK 266
Query: 450 KICPGRKKR 458
KI +KK+
Sbjct: 267 KIASMKKKK 275
>At5g62640 unknown protein
Length = 520
Score = 30.4 bits (67), Expect = 2.2
Identities = 13/52 (25%), Positives = 33/52 (63%)
Query: 382 PESLEGYQKQLDIERRENSMWEVKYRKKKQEYDTVKNLLDQQIQANCKEKNE 433
PE ++ ++LD+ + E ++ + + KK+Q DT+K ++ ++ + + K+K +
Sbjct: 45 PEQIKDQIRKLDMSKAEGALDKARKHKKRQLEDTLKMVVKKRKEYDEKKKEQ 96
>At5g64360 unknown protein
Length = 464
Score = 30.0 bits (66), Expect = 2.9
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 16 PDLESLRNLGRMVKNPEHFRNRYGYLLNILRTNVD 50
PD ++ LGR+ +NPEH +Y L +L +V+
Sbjct: 78 PDWYAVLRLGRLAQNPEHVATQYRRLALLLNPSVN 112
>At1g17760 unknown protein
Length = 734
Score = 30.0 bits (66), Expect = 2.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 298 KPVYLILDRDFFLYKKDDANQRAQFKKAWYSIIRKDRNQLGNRSVIAHEAY 348
+PVY++ DF DD N RA F++A ++ +D ++ R + + Y
Sbjct: 401 EPVYILKYADFLTRLNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTY 451
>At5g01570 putative protein
Length = 157
Score = 29.6 bits (65), Expect = 3.8
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 383 ESLEGYQKQLDI--ERRENSMWEVKYRKKKQEYDTVKNLLDQQIQANCKEKNE 433
ESL+ QK+LD+ E+ + + E+ ++E + ++ LD++++ CK K E
Sbjct: 54 ESLQDLQKKLDVCKEKTDEANSEIA---DEEEIERLQKELDEELELECKLKEE 103
>At5g13950 unknown protein
Length = 939
Score = 29.3 bits (64), Expect = 4.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 221 ITSHLPRPKVKPEYLPWSQKLMTLTPNDIVWFN 253
++S+L +P +YL S +L P+D+VW N
Sbjct: 885 VSSNLVQPANPLDYLSGSNPTTSLMPDDVVWMN 917
>At5g60030 KED - like protein
Length = 292
Score = 28.9 bits (63), Expect = 6.4
Identities = 16/71 (22%), Positives = 40/71 (55%), Gaps = 6/71 (8%)
Query: 386 EGYQKQLDIERRENSMWEVKYRKKKQEYDTVKNLLDQQIQANCKEKNENARLKASIQRK- 444
E ++L+ E+R E K KKK++ + ++++D++++ +++ ++A K ++K
Sbjct: 131 EKVNEKLEAEQRSEERRERKKEKKKKKNNKDEDVVDEKVKEKLEDEQKSADRKERKKKKS 190
Query: 445 -----EDFLDK 450
ED +D+
Sbjct: 191 KKNNDEDVVDE 201
>At5g52550 unknown protein
Length = 360
Score = 28.5 bits (62), Expect = 8.4
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 344 AHEAYVKWVIDRANKWKMPYPRQRLVTSTVSAIPLPLPPESLEGYQKQLDIERRENSMWE 403
A + VK V+D + + R +T +AI L + + QL+ E+S
Sbjct: 18 ARKKKVKGVVDPIKQAEKKNRRLEKAIATSAAIRAELEKKKQMKKEGQLEAADEEDS--- 74
Query: 404 VKYRKKKQEYDTVKNLLDQQIQANCKEKN--ENARLKASIQRKE 445
KKKQE D ++ + + + N EK+ +A + A +++K+
Sbjct: 75 ADAAKKKQERDELERIKQAENKKNRLEKSIATSAAIMAELEKKK 118
>At5g13340 putative protein
Length = 242
Score = 28.5 bits (62), Expect = 8.4
Identities = 19/66 (28%), Positives = 37/66 (55%), Gaps = 5/66 (7%)
Query: 386 EGYQKQ-LDIE---RRENSMWEVKYRKKKQEYDTVKNLLDQQIQANCKEKNENARLKA-S 440
E Y+K LD+E ++E + R+K+++ + LD+ ++ N + E+ R +A
Sbjct: 127 EAYEKMFLDVEIQLKKEKEAALNEARRKEEQARREREELDKMLEENSRRVEESQRREAME 186
Query: 441 IQRKED 446
+QRKE+
Sbjct: 187 LQRKEE 192
>At5g09540 putative protein
Length = 280
Score = 28.5 bits (62), Expect = 8.4
Identities = 11/37 (29%), Positives = 22/37 (58%)
Query: 14 KKPDLESLRNLGRMVKNPEHFRNRYGYLLNILRTNVD 50
K PD ++ + R+ ++PEH +Y L +L+ N++
Sbjct: 72 KVPDWYAVLRISRLTQSPEHVATQYRRLTLLLKLNIN 108
>At3g61150 homeobox protein
Length = 808
Score = 28.5 bits (62), Expect = 8.4
Identities = 18/71 (25%), Positives = 32/71 (44%), Gaps = 7/71 (9%)
Query: 389 QKQLDIERRENSMWEVKYRKKKQEYDTVKNLLDQQIQANC-------KEKNENARLKASI 441
Q + IER EN++ + K + E +V+ + + NC + E L+
Sbjct: 164 QMKTQIERHENALLRQENDKLRAENMSVREAMRNPMCGNCGGPAVIGEISMEEQHLRIEN 223
Query: 442 QRKEDFLDKIC 452
R +D LD++C
Sbjct: 224 SRLKDELDRVC 234
>At1g68790 putative nuclear matrix constituent protein 1 (NMCP1)
Length = 1085
Score = 28.5 bits (62), Expect = 8.4
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 385 LEGYQKQLDIERRENSMWEVKYRKKKQEYDTVKNLLDQQIQANCKEKNEN-ARLKASIQR 443
L+ + LD RRE M + R+ E K +Q+Q K E A+ +A++++
Sbjct: 353 LDDQKAVLDSRRREFEMELEQMRRSLDEELEGKKAEIEQLQVEISHKEEKLAKREAALEK 412
Query: 444 KEDFLDKICPGRKKRRMDL 462
KE+ G KK+ DL
Sbjct: 413 KEE-------GVKKKEKDL 424
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,340,774
Number of Sequences: 26719
Number of extensions: 520742
Number of successful extensions: 1259
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 19
length of query: 472
length of database: 11,318,596
effective HSP length: 103
effective length of query: 369
effective length of database: 8,566,539
effective search space: 3161052891
effective search space used: 3161052891
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC144656.4