BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144656.13 + phase: 0 /pseudo/partial
         (1235 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g20390 hypothetical protein                                        246  6e-65
At2g15410 putative retroelement pol polyprotein                       237  4e-62
At1g37200 hypothetical protein                                        218  2e-56
At2g14380 putative retroelement pol polyprotein                       206  7e-53
At2g14400 putative retroelement pol polyprotein                       190  4e-48
At4g03800                                                             172  8e-43
At2g15100 putative retroelement pol polyprotein                       162  8e-40
At2g14040 putative retroelement pol polyprotein                       155  1e-37
At2g13210 pseudogene                                                  151  2e-36
At2g13330 F14O4.9                                                     151  3e-36
At1g37060 Athila retroelment ORF 1, putative                          150  3e-36
At4g07660 putative athila transposon protein                          149  7e-36
At2g10780 pseudogene                                                  136  8e-32
At2g07660 putative retroelement pol polyprotein                       136  8e-32
At1g35370 hypothetical protein                                        130  4e-30
At4g10580 putative reverse-transcriptase -like protein                128  2e-29
At3g11970 hypothetical protein                                        127  5e-29
At2g04670 putative retroelement pol polyprotein                       127  5e-29
At1g36590 hypothetical protein                                        127  5e-29
At2g05610 putative retroelement pol polyprotein                       124  3e-28

>At1g20390 hypothetical protein
          Length = 1791

 Score =  246 bits (628), Expect = 6e-65
 Identities = 122/244 (50%), Positives = 164/244 (67%)

Query: 991  EFINIGTEENKREIKVGAALEEWVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPT 1050
            E +NI   +  R + VGA +   ++ ++I LL+     FAWS EDM G+DP I  H +  
Sbjct: 712  EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 771

Query: 1051 KPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 1110
             P   PV+QK R+  P+ A  +  EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 772  DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 831

Query: 1111 VDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITP 1170
            VD+ DLNKA PKD++PL HID LV+  + + +  FMD FSGYNQI M  +D+EKTSF+T 
Sbjct: 832  VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 891

Query: 1171 WGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKM 1230
             GT+CYKVM  GL NAGATYQR +  +  D I + VEVY+DDM+VKS   E HVE+L+K 
Sbjct: 892  RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 951

Query: 1231 FERL 1234
            F+ L
Sbjct: 952  FDVL 955



 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 7/176 (3%)

Query: 665 FSEDELPEAGKYHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRETSLRIS 724
           F++ +L      HN  L + +      ++ VL+DTGSS++++ K  L  ++  +  ++  
Sbjct: 555 FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 614

Query: 725 TFLVKAFDGSRKNVLGEIDLPMTIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTST 784
           +  +  FDG     +G I LP+ +G     + F V+   A Y+ +LG PWIH   A+ ST
Sbjct: 615 SKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPST 674

Query: 785 LHQNFKFVKNGKLVTVHG-------EEAYLVSQLSSFSCIEAGSAEGTAFQGLTIE 833
            HQ  KF  +  + T+           +Y  S+L     +    ++ T   G+  E
Sbjct: 675 YHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAE 730



 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 36/172 (20%), Positives = 71/172 (40%), Gaps = 4/172 (2%)

Query: 43  EFDRYNGLTCPHNHIIKY---VRKMGNYSDN-DSLMIHCFQDSLMEDAAEWYTSLSKDDV 98
           + + YNG   P   +  +   + +     DN D+     F + L   A  W++ L  + +
Sbjct: 173 KLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSI 232

Query: 99  HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKDESFREYAQRWRGAAARITPALDEEE 158
            +F +L ++F  HY      + +   L S+SQ   ES R +  R++     IT   +   
Sbjct: 233 DSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVPDEAAI 292

Query: 159 MTQRFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKVESS 210
           +  R        + + + + AP+   + +   +R  E   E +I+  K  S+
Sbjct: 293 VALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELEEEKLILARKHNST 344


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  237 bits (604), Expect = 4e-62
 Identities = 118/267 (44%), Positives = 168/267 (62%), Gaps = 1/267 (0%)

Query: 968  IPYEITRLLEQEKKAIQPHQEEIEFINIGTEENKREIKVGAALEEWVKKKIIQLLREYPD 1027
            I Y +  +  Q+++   P +  +  +NI   +  R + +   L   ++ +++  LR+   
Sbjct: 695  IIYNVILVPTQDERP-NPQKGTVVQVNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAA 753

Query: 1028 IFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMT 1087
             FAWS EDMPG+D  +  H +   P   P++QK R+  PD    +  EV+K +DAG ++ 
Sbjct: 754  TFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVE 813

Query: 1088 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMD 1147
            V YP+W+ N V V KK+GK R+C+DF DLNKA PKD+FPL HID LV+  A +++  FMD
Sbjct: 814  VRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMD 873

Query: 1148 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVE 1207
             FSGYNQI M   DREKT FIT  GT+CYKVMP GL NAGATY R +  +F D +   +E
Sbjct: 874  AFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSME 933

Query: 1208 VYVDDMIVKSKDEEQHVEYLTKMFERL 1234
            VY+DDM+VKS   E+H+ +L + F+ L
Sbjct: 934  VYIDDMLVKSLRAEEHITHLRQCFQVL 960



 Score = 31.6 bits (70), Expect = 2.9
 Identities = 24/102 (23%), Positives = 42/102 (40%), Gaps = 4/102 (3%)

Query: 47  YNGLTCPHNHIIKYVRKMG--NYSDNDSLMIHC--FQDSLMEDAAEWYTSLSKDDVHTFD 102
           Y GL  P   +      +G  ++SD D     C  F   L   A  W++ L  + + +  
Sbjct: 258 YEGLVDPRPFLTSVSIAIGRAHFSDEDRDAGSCQLFVKHLSGAALTWFSRLEANSIDSVH 317

Query: 103 ELAAAFKSHYGFNTRLKPNREFLRSLSQKKDESFREYAQRWR 144
            L  +F  +YG       +   L +++Q   ES R +  R++
Sbjct: 318 ALTTSFLKNYGVFMEKGASNVDLWTMAQTAKESLRSFIGRFK 359


>At1g37200 hypothetical protein
          Length = 1564

 Score =  218 bits (555), Expect = 2e-56
 Identities = 109/250 (43%), Positives = 158/250 (62%), Gaps = 4/250 (1%)

Query: 985  PHQEEIEFINIGTEENKREIKVGAALEEWVKKKIIQLLREYPDIFAWSYEDMPGLDPKIV 1044
            P +  I  + I   + K+ + VG  L+  +++  I  L+E  D FAWS  ++ G+  ++ 
Sbjct: 614  PQKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFAWSSANLQGISLEVT 673

Query: 1045 EHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKD 1104
             H +   P   P++QK R+  P+ A  +++EV + +  G +  V+YP+W+AN V V  K+
Sbjct: 674  SHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKYPDWLANPVVVKNKN 733

Query: 1105 GKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREK 1164
            GK R+C+DF DLNKA PKD+FPL HID LV   A  ++  FMD FSGYNQI M P+D+EK
Sbjct: 734  GKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQILMRPDDQEK 793

Query: 1165 TSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHV 1224
            T+FIT     CYKVMP GL N GATYQR +  +F D + K +E+Y+DDM+VKS  E+ H+
Sbjct: 794  TAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYIDDMLVKSAHEKDHL 849

Query: 1225 EYLTKMFERL 1234
              L + F+ L
Sbjct: 850  PQLRECFKIL 859



 Score = 40.4 bits (93), Expect = 0.006
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 764 ASYSCLLGRPWIHDAGAVTSTLHQNFKFVKNGKLVTVHGEEAYLVSQLSSFSC 816
           A ++ +LGRPW+H   AV ST HQ  KF     +  ++G      SQ SS  C
Sbjct: 530 APFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGIAVIYG------SQRSSRRC 576



 Score = 30.8 bits (68), Expect = 5.0
 Identities = 16/45 (35%), Positives = 27/45 (59%), Gaps = 2/45 (4%)

Query: 663 LWFSEDELPEAGKYHNLALHISVNCKSDMLSNVLVDTGSSLNVMP 707
           LW  E E  +  K H+ A+ I ++  +  LS +++DTGSS++  P
Sbjct: 489 LW--ESETTDLDKPHDDAIVIRIDVGNYKLSRIMIDTGSSVDKAP 531


>At2g14380 putative retroelement pol polyprotein
          Length = 764

 Score =  206 bits (524), Expect = 7e-53
 Identities = 99/200 (49%), Positives = 135/200 (67%)

Query: 1035 DMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWV 1094
            DM G+DP++  H +   P    V+QK R+  P+ +  + +EV K +DAG ++ V+YPEW+
Sbjct: 476  DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535

Query: 1095 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQ 1154
            AN V V KK+ K R+C+DF DLNKA PKD+FPL HID +V+    +++  FMD FSGYNQ
Sbjct: 536  ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595

Query: 1155 IKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMI 1214
            I M  +D+EKTSFI   GT+CYKVMP GL N GA YQR +  +F   + K +EVY+DDM+
Sbjct: 596  IPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDML 655

Query: 1215 VKSKDEEQHVEYLTKMFERL 1234
            VKS     H+++L   FE L
Sbjct: 656  VKSTRSADHIDHLKACFETL 675



 Score = 80.5 bits (197), Expect = 6e-15
 Identities = 54/195 (27%), Positives = 88/195 (44%), Gaps = 27/195 (13%)

Query: 637 EQAYVDHEVTMDRFGSIVGNITACNN---------------LW------------FSEDE 669
           +Q + D  V   R   I+G +TAC +               LW            F+ ++
Sbjct: 277 DQQHNDAPVPRRRVNMIMGGLTACRDSFRSIKEYIKSGAATLWSSPATKEMTPLTFTSED 336

Query: 670 LPEAGKYHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRETSLRISTFLVK 729
           L      HN  L I ++     ++ +L+DTGSS+NV+ K  L ++   +  ++ S   + 
Sbjct: 337 LFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLT 396

Query: 730 AFDGSRKNVLGEIDLPMTIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQNF 789
            FDG+     G I LP+ +G       F V+D    Y+ +LG PWIHD  A+ S+ HQ  
Sbjct: 397 GFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCI 456

Query: 790 KFVKNGKLVTVHGEE 804
           K   +  + T+ G +
Sbjct: 457 KIPTSIGIETIRGNQ 471


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  190 bits (483), Expect = 4e-48
 Identities = 90/170 (52%), Positives = 123/170 (71%)

Query: 1062 RRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASP 1121
            R+   + A  + +EV K +  G +  V+YP+W+AN V V KK+GK R+C+DF DLNKA P
Sbjct: 470  RKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACP 529

Query: 1122 KDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPI 1181
            KD+FPL HID LV++ A +++  FMD FSGYNQI M+PED+EKT FIT  G +CYKVMP 
Sbjct: 530  KDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589

Query: 1182 GLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMF 1231
            GL NAGATY R +  +F + + K +EVY+DDM++KS  +E HV++L + F
Sbjct: 590  GLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECF 639



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 26/111 (23%), Positives = 50/111 (44%), Gaps = 4/111 (3%)

Query: 45  DRYNGLTCPHNHIIKYVRKMG----NYSDNDSLMIHCFQDSLMEDAAEWYTSLSKDDVHT 100
           + YNGL  P  ++  ++   G    N +D D      F ++L   A  W+T L    +  
Sbjct: 163 ESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVRYCKLFSENLCGQALMWFTQLEPGSISN 222

Query: 101 FDELAAAFKSHYGFNTRLKPNREFLRSLSQKKDESFREYAQRWRGAAARIT 151
           F+EL+  F   Y        +   L +LSQ  +E+ R +  +++   ++++
Sbjct: 223 FNELSVVFLKQYSILMDKSISDTDLWNLSQGPNETLRAFITKFKYVLSKLS 273



 Score = 34.7 bits (78), Expect = 0.35
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 662 NLWFSEDELPEAGKYHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRETSL 721
           ++ F E E     + H+ AL ++++  +  +S +L+DTGSS++++  STL+++      +
Sbjct: 408 SILFDEKETQHLERSHDDALVVTLDVANFEVSRILIDTGSSVDLIFLSTLERMGISRADV 467

Query: 722 RISTFLVKAFDGSRKNVLGEIDLPMTIG 749
                 V+      K V  E+D  + IG
Sbjct: 468 NRRKLGVE----RAKAVNDEVDKLLKIG 491


>At4g03800
          Length = 637

 Score =  172 bits (437), Expect = 8e-43
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 15/199 (7%)

Query: 1036 MPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVA 1095
            MP +DP I+ H +   P   P++QK R+   + A  +  ++ K +  G +  V+YP+WVA
Sbjct: 321  MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380

Query: 1096 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQI 1155
              V V KK+GK R+C+DF DLNKA PKD+FPL HID LV++ A +++  FMD F GYNQI
Sbjct: 381  ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440

Query: 1156 KMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1215
             M+PED+EKTSFIT               + GATYQ  +  +F++ + K +EV +DD +V
Sbjct: 441  MMNPEDQEKTSFIT---------------DRGATYQWLVNKMFNEHLRKTMEVSIDDTLV 485

Query: 1216 KSKDEEQHVEYLTKMFERL 1234
            KS  +E HV++L + FE L
Sbjct: 486  KSLKKEDHVKHLGECFEIL 504



 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 47/147 (31%), Positives = 74/147 (49%), Gaps = 20/147 (13%)

Query: 660 CNNLWFSEDELPEAGKYHNLALHISVNCKSDMLSNVLVDTGSSLNVM---PKSTLDQLSY 716
           C+++ F E+E     + H+ AL I+++  +  +S +LVDTGSS++++   P S L     
Sbjct: 182 CSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLIFLGPPSPL----- 236

Query: 717 RETSLRISTFLVKAFDGSRKNVLGEIDLPMTIGPETFLITFQVMDINASYSCLLGRPWIH 776
                        AF       LG I LP+  G  + ++ F V D  A+Y+ +LG PWI 
Sbjct: 237 ------------VAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIF 284

Query: 777 DAGAVTSTLHQNFKFVKNGKLVTVHGE 803
              AV ST HQ  KF  +  + T+ G+
Sbjct: 285 QMKAVPSTYHQWLKFPTSNGVETIWGD 311


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score =  162 bits (411), Expect = 8e-40
 Identities = 80/151 (52%), Positives = 103/151 (67%)

Query: 1036 MPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVA 1095
            M G+  +++ H +   P   PV+QK R+  PD A  +  EV + ++ G +  V+YPEW+A
Sbjct: 412  MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471

Query: 1096 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQI 1155
            N V V KK+GK R+CVDF DLNKA  KD FPL HID LV++    ++  FMD FSGYNQI
Sbjct: 472  NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531

Query: 1156 KMSPEDREKTSFITPWGTFCYKVMPIGLINA 1186
             M+PED+EKTSFIT  GT+ YKVMP GL NA
Sbjct: 532  LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562



 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 30/94 (31%), Positives = 45/94 (46%), Gaps = 5/94 (5%)

Query: 701 SSLNVMPKSTLDQLSYRETSLR---ISTFLVKAFDGSRKNVLGEIDLPMTIGPETFLITF 757
           S+ N  PK+     + + T LR     T      + S    LG + LP+T      ++ F
Sbjct: 314 SASNAAPKAPQPATTKKPTELRKPAAGTCTTMLCETSMS--LGTVVLPVTAQGVVKMVEF 371

Query: 758 QVMDINASYSCLLGRPWIHDAGAVTSTLHQNFKF 791
            V D  A+Y+ +LG PW+++   V ST HQ  KF
Sbjct: 372 TVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKF 405


>At2g14040 putative retroelement pol polyprotein
          Length = 841

 Score =  155 bits (392), Expect = 1e-37
 Identities = 79/221 (35%), Positives = 125/221 (55%), Gaps = 18/221 (8%)

Query: 1022 LREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1081
            LR+Y     +S +D+ G+ P +  H I  + E     +  RR + ++   +K E+ K +D
Sbjct: 340  LRKYRKALGYSLDDITGISPTLCMHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLD 399

Query: 1082 AGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDFRDLNKASPKD 1123
            AG +  +    WV+ +  VPKK G +                  RMC+D+R LN A+ KD
Sbjct: 400  AGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKD 459

Query: 1124 NFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGL 1183
            NFPL  ID +++  +    + F+DG+ G+ QI + P+D+EKT+F  P+GTF Y+ MP GL
Sbjct: 460  NFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGL 519

Query: 1184 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHV 1224
             NA AT+Q  M  +F DMI   +EV++DD +V  + E++H+
Sbjct: 520  CNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKHL 560


>At2g13210 pseudogene
          Length = 152

 Score =  151 bits (382), Expect = 2e-36
 Identities = 72/147 (48%), Positives = 98/147 (65%)

Query: 1029 FAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTV 1088
            F WS ED+PG+  +IV H +   P   PV+QK R+   + A  +K EV+K +  G +   
Sbjct: 6    FVWSPEDLPGVSVEIVAHELNVDPTFKPVKQKRRKLGRERAEAVKAEVEKLLRIGSITKA 65

Query: 1089 EYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDG 1148
            +YPEW+AN V V KK+GK R+C+DF DLNKA PKD+FP+ HI  LV++ +  K+  FMD 
Sbjct: 66   KYPEWLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPMSHIGRLVESTSGDKLLSFMDA 125

Query: 1149 FSGYNQIKMSPEDREKTSFITPWGTFC 1175
            F+GYNQI M+ ED+EKT+F T  G  C
Sbjct: 126  FAGYNQIMMNSEDQEKTTFYTEQGIVC 152


>At2g13330 F14O4.9
          Length = 889

 Score =  151 bits (381), Expect = 3e-36
 Identities = 74/133 (55%), Positives = 95/133 (70%)

Query: 1102 KKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPED 1161
            +K+GK R+C+DFRDLNKA PKD+FPL HID LV+   + +   FMD F GYNQI M  + 
Sbjct: 289  EKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDG 348

Query: 1162 REKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEE 1221
            +EKT+FIT  GT+ YKVMP GL NAG TYQR +  +F D + K +EVY+DDM+VKS  E+
Sbjct: 349  QEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEK 408

Query: 1222 QHVEYLTKMFERL 1234
             HV  L + F+ L
Sbjct: 409  DHVPQLRECFKIL 421



 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 6/156 (3%)

Query: 661 NNLWFSEDELPEAGKYHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRETS 720
           + + F E E+ +  K H+ AL I ++  +  LS ++VDTGSS++V+      +  + ++ 
Sbjct: 45  DGITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSK 104

Query: 721 LRISTFLVKAFDGSRKNVLGEIDLPMTIGPETFLITFQVMDINASYSCLLGRPWIHDAGA 780
           L+     +  F G     +G I LP        L  F V+D  A ++ +LGRPW+H   A
Sbjct: 105 LQGRKTPLTGFAGDTTFSIGTIQLPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKA 164

Query: 781 VTSTLHQNFKFVKNGKLVTVHGEEAYLVSQLSSFSC 816
           V ST HQ  KF     +  V+G      SQ SS  C
Sbjct: 165 VPSTYHQCIKFPSYKGIAVVYG------SQRSSRKC 194


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  150 bits (380), Expect = 3e-36
 Identities = 85/258 (32%), Positives = 138/258 (52%), Gaps = 19/258 (7%)

Query: 976  LEQEKKAIQPHQEEIEFINIGTEENKREIKVGAALEEWVKKKIIQLLREYPDIFAWSYED 1035
            ++  K  ++P  + + ++ +G       I       + V   I +L++ Y     +S +D
Sbjct: 820  IKAPKVDLKPLPKGLRYVFLGLNSTYPVIVNDELTADQVNLLITELMK-YRKAIGYSLDD 878

Query: 1036 MPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVA 1095
            + G+ P +  HRI  + E     +  RR +P++   +K E+ K +DAG +  +    WV+
Sbjct: 879  IKGISPTLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVS 938

Query: 1096 NIVPVPKKDGKV------------------RMCVDFRDLNKASPKDNFPLLHIDVLVDNN 1137
             +  VPKK G                    RMC+++R LN AS K++FPL  ID +++  
Sbjct: 939  PVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERL 998

Query: 1138 AQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTL 1197
            A    + F+D +SG+ QI + P D+ KT+F  P+GTF YK MP GL NA AT+QR MT++
Sbjct: 999  ANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSI 1058

Query: 1198 FHDMIHKEVEVYVDDMIV 1215
            F D+I + VEV++DD  V
Sbjct: 1059 FSDLIEEMVEVFMDDFSV 1076



 Score = 39.7 bits (91), Expect = 0.011
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 15/146 (10%)

Query: 15  NRGNGDSVKTHDLC--LVPKVDVPKKFKVP-------EFDRYNGLTC--PHNHIIKYVRK 63
           N G GD+ + H+    +VP       F++        + ++++GL    P +H+ ++ R 
Sbjct: 13  NIGAGDAPRNHNQRNGIVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRL 72

Query: 64  MG----NYSDNDSLMIHCFQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLK 119
                 N    D   +  F  SL + A +W  SL +  + ++++   AF + +  N+R  
Sbjct: 73  CSLTKINRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTA 132

Query: 120 PNREFLRSLSQKKDESFREYAQRWRG 145
             R  +   +Q  +E+F E  +R++G
Sbjct: 133 RLRNDISGFTQTNNETFYEAWERFKG 158


>At4g07660 putative athila transposon protein
          Length = 724

 Score =  149 bits (377), Expect = 7e-36
 Identities = 145/558 (25%), Positives = 225/558 (39%), Gaps = 104/558 (18%)

Query: 696  LVDTGSSLNVMPKSTLDQLSYRE-TSLRISTFLVKAFDGSRKNVLGEIDLPMTIGPETFL 754
            L D G+ +++MP S   +L + +  S  IS  L         ++    +LP+ IG     
Sbjct: 35   LCDLGALVSLMPLSVAKRLGFTQYKSCNISLILADRSVRIPHSLFE--NLPIRIGAVDIP 92

Query: 755  ITFQV--MDINASYSCLLGRPWIHDAGAVTST------------LHQNFKFVKNGKLVTV 800
              F V  MD       +LGRP++  AGA+                   F      K  T+
Sbjct: 93   TDFVVLEMDEEPKDPLILGRPFLATAGAMNDVKKGKIDLNLGKYCRMTFDVKDAMKKPTI 152

Query: 801  HGEEAYL--VSQLSSFSCIEAGSAEGTAFQGLTIEGME--LKKTGTAMASLKDAQKAVQE 856
             G+  ++  + QL+    +E  + E   +  LT  G +  L         L D+ KA++E
Sbjct: 153  KGQLFWIEEIDQLAD-ELLEERAEEDHLYSALTKRGEDGFLHLETLGYQKLLDSHKAMEE 211

Query: 857  GQAAGRGKLIQLRENKHKEGLGFSPTSGVSTGTFHSAGF-VNAITEEATGFGPRPVFVIP 915
             +        +       E +  S          HS  +  N  T   +  G     +IP
Sbjct: 212  SEP------FEELNGPETEVMVMSEEGSTQVQPAHSRTYSTNNSTSTISNSGE---LIIP 262

Query: 916  GGIARDWDAIDIPSIMHVSELNHNKPVGHSNPTFPPNFEFPMYEAEAEEGDDIPYEITRL 975
               + DW  +  P +   S      P G     F PN  +P+                  
Sbjct: 263  --TSDDWSELKAPKVDLKS-----LPKGLRYVFFGPNSTYPVI----------------- 298

Query: 976  LEQEKKAIQPHQEEIEFINIGTEENKREIKVGAALEEWVKKKIIQLLREYPDIFAWSYED 1035
                               I  E N  E+ +           ++  LR+Y     +S  D
Sbjct: 299  -------------------INVELNDNEVNL-----------LLSELRKYKRAIGYSLSD 328

Query: 1036 MPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVA 1095
            +  + P +  HRI  + E     +  RR + ++   +K E+ K +DAG +  +    WV 
Sbjct: 329  IKRISPSLCNHRIHLENESYSSIEPQRRLNLNLKEVVKKEILKLLDAGVIYPISDSTWVF 388

Query: 1096 NIVPVPKKDGKV------------------RMCVDFRDLNKASPKDNFPLLHIDVLVDNN 1137
             +  VPKK G                    R+C+D+R LN AS KD+FPL   + +++  
Sbjct: 389  PVHCVPKKGGMTVVKNEKDELIPTRTITGHRVCIDYRKLNAASRKDHFPLPFTNQMLEGL 448

Query: 1138 AQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTL 1197
            A      F+DG+SG+ QI + P D+EKT+F  P+GTF YK MP GL NA  T+QR MT++
Sbjct: 449  ANHLYNCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPTTFQRCMTSI 508

Query: 1198 FHDMIHKEVEVYVDDMIV 1215
            F D+I K VEV++DD  V
Sbjct: 509  FSDLIEKMVEVFMDDFSV 526


>At2g10780 pseudogene
          Length = 1611

 Score =  136 bits (342), Expect = 8e-32
 Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 10/232 (4%)

Query: 1005 KVGAALEEWVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPECPPVRQKLRR 1063
            +VGA+ E     K I ++ E+ D+FA     + G+ P   +   I  +P   P+ +   R
Sbjct: 615  EVGASAE----LKDIPIVNEFSDVFA----AVSGVPPDRSDPFTIELEPGTTPISKAPYR 666

Query: 1064 THPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 1123
              P    K+K ++++ +D GF+     P W A ++ V KKDG  R+C+D+R LNK + K+
Sbjct: 667  MAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 725

Query: 1124 NFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGL 1183
             +PL  ID L+D    ++ F  +D  SGY+QI + P D  KT+F T +  F + VMP GL
Sbjct: 726  KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGL 785

Query: 1184 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 1235
             NA A + + M  +F D + + V ++++D++V SK  E H E+L  + ERLR
Sbjct: 786  TNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLR 837



 Score = 35.4 bits (80), Expect = 0.20
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 85  DAAEWYTSLSK---DDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKDESFREYAQ 141
           DA  W+ ++ K   D+V +F +    F   Y F        E       + + + REY +
Sbjct: 223 DAHNWWLTVEKRRGDEVRSFADFEDEFNKKY-FPPEAWDRLECAYLDLVQGNRTVREYDE 281

Query: 142 RWRGAAARITPALDEEE-MTQRFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRE 199
            +      +   L+EE+   +RF++ L+ +     ++   N+ SE+V     +EE + E
Sbjct: 282 EFNRLRRYVGRELEEEQAQLRRFIRGLRIEIRNHCLVRTFNSVSELVERAAMIEEGIEE 340


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  136 bits (342), Expect = 8e-32
 Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 10/232 (4%)

Query: 1005 KVGAALEEWVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPECPPVRQKLRR 1063
            +VGA+ E     K I ++ E+ D+FA     + G+ P   +   I  +P   P+ +   R
Sbjct: 110  EVGASAE----LKDILIVNEFSDVFA----AVSGVPPDRSDPFTIELEPGTTPISKAPYR 161

Query: 1064 THPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 1123
              P    ++K ++++ +  GF+     P W A ++ V KKDG  R+C+D+R LNK + K+
Sbjct: 162  MAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 220

Query: 1124 NFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGL 1183
             +PL  ID L+D    ++ F  +D  SGY+QI + P D  KT+F T +G F + VMP GL
Sbjct: 221  KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGL 280

Query: 1184 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 1235
             NA A + + M  +F D + + V +++DD++V SK  E H E+L  + ERLR
Sbjct: 281  TNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLR 332


>At1g35370 hypothetical protein
          Length = 1447

 Score =  130 bits (328), Expect = 4e-30
 Identities = 84/240 (35%), Positives = 134/240 (55%), Gaps = 4/240 (1%)

Query: 997  TEENKREIKVGAALEEWVKKKIIQ-LLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECP 1055
            ++E +    + A   + V++ ++Q ++ E+PD+FA    D+P    K  +H+I       
Sbjct: 522  SDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFA-EPTDLPPFREKH-DHKIKLLEGAN 579

Query: 1056 PVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRD 1115
            PV Q+  R       +I   VQ  I +G +     P + + +V V KKDG  R+CVD+ +
Sbjct: 580  PVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSP-FASPVVLVKKKDGTWRLCVDYTE 638

Query: 1116 LNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFC 1175
            LN  + KD F +  I+ L+D    S VF  +D  +GY+Q++M P+D +KT+F T  G F 
Sbjct: 639  LNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFE 698

Query: 1176 YKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 1235
            Y VM  GL NA AT+Q  M ++F D + K V V+ DD+++ S   E+H E+L  +FE +R
Sbjct: 699  YLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMR 758


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  128 bits (322), Expect = 2e-29
 Identities = 72/218 (33%), Positives = 126/218 (57%), Gaps = 6/218 (2%)

Query: 1019 IQLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKNEVQ 1077
            I++++E+ D+F    + + GL P   +   I  +P   P+ +   R  P    ++K +++
Sbjct: 457  IRVVQEFQDVF----QSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLK 512

Query: 1078 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNN 1137
              +  GF+     P W A ++ V KKDG  R+C+D+R+LN+ + K+ +PL  ID L+D  
Sbjct: 513  DLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQL 571

Query: 1138 AQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTL 1197
              +  F  +D  SGY+QI ++  D  KT+F T +G F + VMP GL NA A + R M ++
Sbjct: 572  RGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSV 631

Query: 1198 FHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 1235
            F + + + V +++DD++V SK  E+   +L ++ E+LR
Sbjct: 632  FQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLR 669


>At3g11970 hypothetical protein
          Length = 1499

 Score =  127 bits (318), Expect = 5e-29
 Identities = 87/266 (32%), Positives = 146/266 (54%), Gaps = 15/266 (5%)

Query: 978  QEKKAIQPHQEEIEFINIG--TEENKREI-KVGAALEEWVKKKIIQ-LLREYPDIFAWSY 1033
            Q+ + +Q  Q ++  + +   +E  + E+  + A   E  ++ +++ +L EYPDIF    
Sbjct: 521  QKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLNEYPDIFIEPT 580

Query: 1034 EDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDA----GFLMTVE 1089
               P  +     H+I       PV Q+  R     ++  KNE+ K ++     G +    
Sbjct: 581  ALPPFREKH--NHKIKLLEGSNPVNQRPYR----YSIHQKNEIDKLVEDLLTNGTVQASS 634

Query: 1090 YPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGF 1149
             P + + +V V KKDG  R+CVD+R+LN  + KD+FP+  I+ L+D    + +F  +D  
Sbjct: 635  SP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLR 693

Query: 1150 SGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVY 1209
            +GY+Q++M P+D +KT+F T  G F Y VMP GL NA AT+Q  M  +F   + K V V+
Sbjct: 694  AGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVF 753

Query: 1210 VDDMIVKSKDEEQHVEYLTKMFERLR 1235
             DD++V S   E+H ++L ++FE +R
Sbjct: 754  FDDILVYSSSLEEHRQHLKQVFEVMR 779


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  127 bits (318), Expect = 5e-29
 Identities = 72/218 (33%), Positives = 124/218 (56%), Gaps = 6/218 (2%)

Query: 1019 IQLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKNEVQ 1077
            I++++E+ D+F    + + GL P   +   I  +P   P+ +   R  P    ++K +++
Sbjct: 483  IRVIQEFEDVF----QSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLE 538

Query: 1078 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNN 1137
              +  GF+     P W A ++ V KKDG  R+C+D+R LN  + K+ +PL  ID L+D  
Sbjct: 539  DLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQL 597

Query: 1138 AQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTL 1197
              +  F  +D  SGY+QI ++  D  KT+F T +G F + VMP  L NA A + R M ++
Sbjct: 598  RGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSV 657

Query: 1198 FHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 1235
            F + + + V +++DD++V SK  E+H  +L ++ E+LR
Sbjct: 658  FQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLR 695


>At1g36590 hypothetical protein
          Length = 1499

 Score =  127 bits (318), Expect = 5e-29
 Identities = 87/266 (32%), Positives = 146/266 (54%), Gaps = 15/266 (5%)

Query: 978  QEKKAIQPHQEEIEFINIG--TEENKREI-KVGAALEEWVKKKIIQ-LLREYPDIFAWSY 1033
            Q+ + +Q  Q ++  + +   +E  + E+  + A   E  ++ +++ +L EYPDIF    
Sbjct: 521  QKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLNEYPDIFIEPT 580

Query: 1034 EDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDA----GFLMTVE 1089
               P  +     H+I       PV Q+  R     ++  KNE+ K ++     G +    
Sbjct: 581  ALPPFREKH--NHKIKLLEGSNPVNQRPYR----YSIHQKNEIDKLVEDLLTNGTVQASS 634

Query: 1090 YPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGF 1149
             P + + +V V KKDG  R+CVD+R+LN  + KD+FP+  I+ L+D    + +F  +D  
Sbjct: 635  SP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLR 693

Query: 1150 SGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVY 1209
            +GY+Q++M P+D +KT+F T  G F Y VMP GL NA AT+Q  M  +F   + K V V+
Sbjct: 694  AGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVF 753

Query: 1210 VDDMIVKSKDEEQHVEYLTKMFERLR 1235
             DD++V S   E+H ++L ++FE +R
Sbjct: 754  FDDILVYSSSLEEHRQHLKQVFEVMR 779


>At2g05610 putative retroelement pol polyprotein
          Length = 780

 Score =  124 bits (312), Expect = 3e-28
 Identities = 78/220 (35%), Positives = 123/220 (55%), Gaps = 11/220 (5%)

Query: 1020 QLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQ 1079
            +++ E+PDIF    +  P   P   +H+I    +  PV Q+  R      +  KNE+ K 
Sbjct: 9    KVVTEFPDIFVEPTDLPPFRAPH--DHKIELLEDSNPVNQRPYR----YVVHQKNEIDKI 62

Query: 1080 ID----AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVD 1135
            +D    +G +     P + + +V V KKDG  R+CVD+R+LN  + KD FP+  I+ L+D
Sbjct: 63   VDDMLASGTIQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMD 121

Query: 1136 NNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMT 1195
                S V+  +D  +GY+Q++M P D  KT+F T  G + Y VMP GL NA A++Q  M 
Sbjct: 122  ELGGSNVYSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMN 181

Query: 1196 TLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 1235
            + F   + K V V+ DD+++ S   E+H ++L  +FE +R
Sbjct: 182  SFFKPFLRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMR 221


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,883,285
Number of Sequences: 26719
Number of extensions: 1342616
Number of successful extensions: 4552
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 4235
Number of HSP's gapped (non-prelim): 313
length of query: 1235
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1124
effective length of database: 8,352,787
effective search space: 9388532588
effective search space used: 9388532588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)