BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144645.3 + phase: 0 /pseudo
(993 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31210 putative reverse transcriptase 498 e-141
At4g10690 retrotransposon like protein 488 e-138
At2g14930 pseudogene 450 e-126
At4g27210 putative protein 446 e-125
At2g13940 putative retroelement pol polyprotein 406 e-113
At1g70010 hypothetical protein 398 e-111
At2g20460 putative retroelement pol polyprotein 397 e-110
At2g07010 putative retroelement pol polyprotein 394 e-109
At1g57640 389 e-108
At2g16000 putative retroelement pol polyprotein 379 e-105
At1g36620 hypothetical protein 376 e-104
At2g16670 putative retroelement pol polyprotein 374 e-103
At3g61330 copia-type polyprotein 363 e-100
At3g59720 copia-type reverse transcriptase-like protein 362 e-100
At1g48710 hypothetical protein 356 3e-98
At4g17450 retrotransposon like protein 351 1e-96
At2g21460 putative retroelement pol polyprotein 348 1e-95
At2g13930 putative retroelement pol polyprotein 343 2e-94
At2g07550 putative retroelement pol polyprotein 342 6e-94
At2g15650 putative retroelement pol polyprotein 330 2e-90
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 498 bits (1283), Expect = e-141
Identities = 289/784 (36%), Positives = 410/784 (51%), Gaps = 45/784 (5%)
Query: 1 MTASQGTLSTYSNLSINKNIVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNL 60
+T+S L + + + ++VG G +PI G T I + LN VL P + K+L
Sbjct: 332 VTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLNEVLVVPNIQKSL 391
Query: 61 IFVRRFTIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAA 120
+ V + D + FD + D+QT + LY L S AA
Sbjct: 392 LSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYVLENQEFVALYSNRQCAA 451
Query: 121 LSPTLWHNRLGHPGANVLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFSISNSTTSK 180
+ +WH+RLGH + L L +K I+ + + +C+ C GK +LPF IS+S
Sbjct: 452 -TEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLH 510
Query: 181 PFDIIHSDLW-TSPILSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQ 239
P D IH DLW SP++S+ G KYY F+DDY+ + W +P+ KS+ S+F SF ++ Q
Sbjct: 511 PLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQ 570
Query: 240 FGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTS 299
T IK FQ D G EF + ++G+ R SCP+T QNG AERK R + +
Sbjct: 571 LNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSM 630
Query: 300 LAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPLF 359
L HS P FW + Y+ N LPS +L + SP + L+ P Y+ LRVFG CYP
Sbjct: 631 LFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCL 690
Query: 360 PSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSST 419
A NK RS C FLGY ++GY+C+ + K+ ISR+VIF+E++ PF + + S
Sbjct: 691 RPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKVYISRNVIFNESELPFKEKYQSLV 750
Query: 420 HTYEFLNDSLHPLLHYHLQNDPKQDEPEPRKIESPQPATTPASPINVTNQSILPPSPMSI 479
Y PLL N + + PA+P+ + ++ P+ +
Sbjct: 751 PQYST------PLLQAWQHNKISE-------------ISVPAAPVQLFSK------PIDL 785
Query: 480 NQLPHPLVSTELTSPTHTP-------------QQIHQEPPRTIATHSMH-----GIHKPK 521
N V+ +LT P T ++I + I +H+M GI KP
Sbjct: 786 NTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQEQVINSHAMTTRSKAGIQKPN 845
Query: 522 IQFNLTTSITSSPLPHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMW 581
++ L TS ++ P +A+ W A+ +E + + TW LVP ++N + S W
Sbjct: 846 TRYALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKW 905
Query: 582 IFRHKKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIH 641
+F+ K DGS ++ KARLV G Q GVD ETFSPVV+ TIR+VL ++ SK WPI
Sbjct: 906 VFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIK 965
Query: 642 QLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAF 701
QLDV N FLHGELQE V+M+QP GF DP P +VC L K++YGLKQAPRAW+ F++F
Sbjct: 966 QLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLL 1025
Query: 702 TIGFSHSKSDHSLFIYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGT 761
GF SKSD SLF+ + + Y+LLYVDDI+LT S L ++ L + F+MKDLG
Sbjct: 1026 DYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGP 1085
Query: 762 LSYF 765
YF
Sbjct: 1086 PRYF 1089
>At4g10690 retrotransposon like protein
Length = 1515
Score = 488 bits (1256), Expect = e-138
Identities = 293/815 (35%), Positives = 419/815 (50%), Gaps = 70/815 (8%)
Query: 10 TYSNLSINKNIVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRFTID 69
TYS + +++VG+G +PI G ++ L L +VL P + K+L+ V + T D
Sbjct: 346 TYSG---DDSVIVGNGDFLPITHIGTIPLNISQGTLPLEDVLVCPGITKSLLSVSKLTDD 402
Query: 70 NNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALSPTLWHNR 129
+ FD S ++D +T L + + LY L Q+ + +WH R
Sbjct: 403 YPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLKDVP-FQTYYSTRQQSSDDEVWHQR 461
Query: 130 LGHPGANVLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFSISNSTTSKPFDIIHSDL 189
LGHP VL L K K I + SS ++C++C GK +LPF S +S+P + IH DL
Sbjct: 462 LGHPNKEVLQHLIKTKAIVVNKTSS-NMCEACQMGKVCRLPFVASEFVSSRPLERIHCDL 520
Query: 190 W-TSPILSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCFQ 248
W +P+ S+ G +YY+ F+D+Y+ F W +P+ KS S+F F ++ Q+ I FQ
Sbjct: 521 WGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHKIAMFQ 580
Query: 249 CDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPS 308
CD G EF + F G+ SCPHT QNG AER+ R + + + HS +P
Sbjct: 581 CDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLMFHSKVPHK 640
Query: 309 FWHHALQITTYLQNILPSKILSHH-SPTQYLYHRDPSYTHLRVFGCLCYPLFPSTAINKL 367
W A + +L N+LPS LS + SP + L+ P YT LRVFG CYP A NK
Sbjct: 641 LWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYLRPYAKNKF 700
Query: 368 QARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHTYEFLND 427
+S C FLGY ++GY+C + K+ I RHV+FDE +FP++ ++ +F
Sbjct: 701 DPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYS------QFQTI 754
Query: 428 SLHPLL---HYHLQNDPKQDEPEPRKIES--------------------PQPATTPASPI 464
S PL + E +E + AT P +
Sbjct: 755 SGSPLFTAWQKGFSSTALSRETPSTNVEDIIFPSATVSSSVPTGCAPNIAETATAPDVDV 814
Query: 465 NVTNQSILPPSPMSINQLP-HPLVSTE-----------LTSPTHTPQQIH---------- 502
+ ++PPSP++ LP P ST S TPQ I+
Sbjct: 815 AAAHDMVVPPSPITSTSLPTQPEESTSDQNHYSTDSETAISSAMTPQSINVSLFEDSDFP 874
Query: 503 ------------QEPPRTIATHSMHGIHKPKIQFNLTTSITSSPLPHNPKAALSDSNWKA 550
E + T + GI KP ++ L + ++ P P + K AL D W
Sbjct: 875 PLQSVISSTTAAPETSHPMITRAKSGITKPNPKYALFSVKSNYPEPKSVKEALKDEGWTN 934
Query: 551 AMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VG 610
AM +E + + TW+LVP + W+F+ K SDGS +R KARLV G Q G
Sbjct: 935 AMGEEMGTMHETDTWDLVPPEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQEEG 994
Query: 611 VDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPI 670
VD ET+SPVV+ T+R +L +A W + QLDVKN FLH EL+ETV+M QP GF DP
Sbjct: 995 VDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDELKETVFMTQPPGFEDPS 1054
Query: 671 HPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYV 730
PDYVC LKK++Y LKQAPRAW+ +F+ + GF S SD SLF+Y KG D+ ++LLYV
Sbjct: 1055 RPDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFLLLYV 1114
Query: 731 DDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
DD+ILT ++DVL + ++++L++EF MKD+G L YF
Sbjct: 1115 DDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYF 1149
>At2g14930 pseudogene
Length = 1149
Score = 450 bits (1158), Expect = e-126
Identities = 278/764 (36%), Positives = 392/764 (50%), Gaps = 35/764 (4%)
Query: 17 NKNIVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEF 76
N ++ G +PI G + L L +VL P + K+L+ V + T D + F
Sbjct: 340 NDTVMASDGNFLPITHIGSANLPSTSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTF 399
Query: 77 DPFSFSVEDIQTGIPLMRCDSTGD-LYPLTTTTSHQSTSPATFAALSPTLWHNRLGHPGA 135
D V+D T L + ST + LY L S A + +WH RLGHP
Sbjct: 400 DADGVLVKDKATCKVLTKGSSTSEGLYKLENPKFQMFYSTRQVKA-TDEVWHMRLGHPNP 458
Query: 136 NVLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFSISNSTTSKPFDIIHSDLW-TSPI 194
VL L K I+ + S+ +C+SC GK +LPF S+ S+P + +H DLW +P+
Sbjct: 459 QVLQLLANKKAIQINK-STSKMCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPV 517
Query: 195 LSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTE 254
S G +YY+ F+D+ + F W +P+ KS S+F F +F++ T I FQ D G E
Sbjct: 518 SSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSDGGGE 577
Query: 255 FNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHAL 314
F + F Q ++G+ SCPHT QNG AERK R + T + S P FW A
Sbjct: 578 FTSNRFLQHLQESGIQHYISCPHTPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAF 637
Query: 315 QITTYLQNILPSKIL-SHHSPTQYLYHRDPSYTHLRVFGCLCYPLFPSTAINKLQARSTP 373
+L N+LP+ L S +P Q L+ + P Y+ LR FGC C+P + A NK RS
Sbjct: 638 FTANFLSNLLPTSALDSSTTPYQVLFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLK 697
Query: 374 CAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHTYEFLNDSLHPLL 433
C FLGY + ++GY+C+ + ++ +SRHV+FDE+ FPF T+TS H S P+
Sbjct: 698 CIFLGYTEKYKGYRCFFPPTNRVYLSRHVLFDESSFPFIDTYTSLQHP------SPTPMF 751
Query: 434 HYHLQNDPKQDEPEPRKIESPQPA--TTPASPINVTNQSILPPSPMSINQLPHPLVSTEL 491
L++ P P +E+ Q A + AS +T Q P +S+ P+ L+
Sbjct: 752 DAWLKSFPSSSSP----LENDQTAGFNSGASVPVITAQQTQPI--LSLKDGPNILLPEGE 805
Query: 492 TSPTHTPQQIHQEPPRTIATHSMHGIHKPKIQFNL----------TTSITSSPLPHNPKA 541
+ + Q I EP ++ K L T S P+ +N
Sbjct: 806 ITVSSNNQDIEDEPICVTPLQTLSSEDNAKSSETLSMGSEECSECTASFDLDPIGNN--- 862
Query: 542 ALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLV 601
ALS S + T + R + + R K DGS ++YKARLV
Sbjct: 863 ALSSSPRHDQLTSSIPRAATESTHPMTTRLKKGIIKLNQ---RVKLNVDGSLDKYKARLV 919
Query: 602 GDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMH 661
G Q G+D ET+SPVV+ T+R VL ++ +W + Q+DVKN FLHG+L ETVYM
Sbjct: 920 AQGFKQEEGIDYLETYSPVVRSATVRAVLHLSTIMNWELKQMDVKNGFLHGDLTETVYMK 979
Query: 662 QPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGN 721
QP GF D HPD+VCLL K+LYGLKQAPRAW+ +F+ F + GF S SD SLF+ K
Sbjct: 980 QPAGFIDKAHPDHVCLLHKALYGLKQAPRAWFDKFSKFLLSFGFVCSMSDPSLFVCVKNK 1039
Query: 722 DMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
D+ +LLYVDD+++T +S L S++S L +F MKDLG LSYF
Sbjct: 1040 DVIMLLLYVDDMVITGNSSKLLSSLLSELNKQFKMKDLGRLSYF 1083
>At4g27210 putative protein
Length = 1318
Score = 446 bits (1146), Expect = e-125
Identities = 274/789 (34%), Positives = 386/789 (48%), Gaps = 94/789 (11%)
Query: 20 IVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPF 79
I+V G +PI G T ++ + L +VL P + K+L+ + + T D T+EF+
Sbjct: 206 IMVDDGNYLPITHTGSTNLASSSGTVPLTDVLVCPSITKSLLSMSKLTQDFPCTVEFEYD 265
Query: 80 SFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALSPTLWHNRLGHPGANVLS 139
V D T L+ + LY L Q+ + S +WH RLGHP +L
Sbjct: 266 GVRVNDKATKKLLLMGSNRDGLYCLKDDKQFQAFFSTRQRSASDEVWHRRLGHPHPQIL- 324
Query: 140 FLNKNKFIECKQISSPSICQSCIYGKHVKLPFSISNSTTSKPFDIIHSDLW-TSPILSSA 198
+P + +H DLW + I S
Sbjct: 325 ----------------------------------------QPLERVHCDLWGPTTITSVQ 344
Query: 199 GHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTEFNNE 258
G +YY F+D Y+ F W +P+ KS +IF +FH ++ Q I FQCD G EF +
Sbjct: 345 GFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFLAFHKLVENQLSQKISVFQCDGGGEFVSH 404
Query: 259 YFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHALQITT 318
F Q +G+ + SCPHT QNG AERK R + + L S +P FW A
Sbjct: 405 KFLQHLQSHGIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLFQSHVPHKFWVEAFFTAN 464
Query: 319 YLQNILPSKILSHH-SPTQYLYHRDPSYTHLRVFGCLCYPLFPSTAINKLQARSTPCAFL 377
+L N+LP+ L SP + LY + P YT LR FG C+P A NK S C FL
Sbjct: 465 FLINLLPTSALKESISPYEKLYDKKPDYTSLRSFGSACFPTLRDYAENKFNPCSLKCVFL 524
Query: 378 GYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHTYEFLNDSLH-PLLHYH 436
GY + ++GY+C + ++ ISRHVIFDE+ +PF+ HTY+ L+ PLL
Sbjct: 525 GYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPFS-------HTYKHLHPQPRTPLLAAW 577
Query: 437 LQNDPKQDEPEPRKIESPQPAT---------------TPASPINVTNQSILPPSPMSINQ 481
L++ D P P SP + TP P V S+ S ++ Q
Sbjct: 578 LRSS---DSPAPSTSTSPSSRSPLFTSADFPPLPQRKTPLLPTLVPISSVSHASNITTQQ 634
Query: 482 LPH-------PLVSTELTSPTHTPQ--------------QIHQEPPRT----IATHSMHG 516
P S + +H+ Q +HQ T + T + G
Sbjct: 635 SPDFDSERTTDFDSASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNVHPMVTRAKVG 694
Query: 517 IHKPKIQFNLTTSITSSPLPHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNF 576
I KP ++ + S P P AAL W AM +E + +TW LVP +++
Sbjct: 695 ISKPNPRYVFLSHKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHV 754
Query: 577 IRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSK 636
+ S W+FR K +DG+ + KAR+V G Q G+D ET+SPVV+ T+R+VL +A +
Sbjct: 755 LGSKWVFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATAL 814
Query: 637 SWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRF 696
+W I Q+DVKN FLHG+L+ETVYM QP GF DP PD+VCLL KS+YGLKQ+PRAW+ +F
Sbjct: 815 NWDIKQMDVKNAFLHGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDKF 874
Query: 697 ADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAM 756
+ F GF SKSD SLFIY N++ +LLYVDD+++T +S S+++ L EF M
Sbjct: 875 STFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLAALNKEFRM 934
Query: 757 KDLGTLSYF 765
D+G L YF
Sbjct: 935 TDMGQLHYF 943
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 406 bits (1044), Expect = e-113
Identities = 271/781 (34%), Positives = 379/781 (47%), Gaps = 71/781 (9%)
Query: 45 LSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPL 104
+SL NVL P L LI V + F ++D + + + G +Y L
Sbjct: 451 VSLTNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGEERGGVYYL 510
Query: 105 TTTTSHQSTSPATFAALSPTLWHNRLGHPGANVLSFLNKNKFIECKQISSPSICQSCIYG 164
T T + + + LWH RLGHP +VLS L F + + C C
Sbjct: 511 TDVTPAKIHTANVDS--DQALWHQRLGHPSFSVLSSLPL--FSKTSSTVTSHSCDVCFRA 566
Query: 165 KHVKLPFSISNSTTSKPFDIIHSDLWTS-PILSSAGHKYYLFFLDDYTNFVWTFPIGRKS 223
K + F S + T + F +IH D+W + +S G Y+L +DDY+ VWT+ + KS
Sbjct: 567 KQTREVFPESINKTEECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKS 626
Query: 224 QVPSIFSSFHAFIKTQFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNG 283
+V + ++F + + QFG T+K + DNGTEF + + +NG++ + SC T QNG
Sbjct: 627 EVRQVLTNFLKYAEKQFGKTVKMVRSDNGTEFM--CLSSYFRENGIIHQTSCVGTPQQNG 684
Query: 284 KAERKIRAINNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDP 343
+ ERK R I N R L +S+P FW ++ YL N PS ILS +P + L+ P
Sbjct: 685 RVERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKP 744
Query: 344 SYTHLRVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVI 403
Y+ LRVFG CY + +K RS C F+GYP +G+K YD+ + ++SR VI
Sbjct: 745 VYSQLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVSRDVI 804
Query: 404 FDETQFPFAKTHTS-----STHTYEFLNDSLHPLLHYHLQND------------------ 440
F E FP+A ++S S T +D P L D
Sbjct: 805 FREEVFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSIDSVETERVVCTTDEVVLDT 864
Query: 441 -------PKQ----DEPEPRKIESPQPA---TTPASPINVTNQSILPPSP---MSINQLP 483
P Q D+ P S P+ TP +PI V S +P SP +
Sbjct: 865 SVSDSEIPNQEFVPDDTPPSSPLSVSPSGSPNTPTTPIVVPVASPIPVSPPKQRKSKRAT 924
Query: 484 HP---LVSTELTSPTHTPQQIHQEPPRTIATHSMHGIHKPKIQFNLT------------- 527
HP L L + +TP IH P + ++ G K F LT
Sbjct: 925 HPPPKLNDYVLYNAMYTPSSIHALPADPSQSSTVPG----KSLFPLTDYVSDAAFSSSHR 980
Query: 528 ---TSITSSPLPHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFR 584
+IT + P + K A+ W AM E DAL NKTW++V P I S W+F+
Sbjct: 981 AYLAAITDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFK 1040
Query: 585 HKKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLD 644
K SDG+ ERYKARLV G Q G D ETF+PVV+ TT+R +L + W ++Q+D
Sbjct: 1041 TKYNSDGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQMD 1100
Query: 645 VKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIG 704
V N FLHG+L+E VYM P GFR HPD VC L+KSLYGLKQAPR W+++ +D G
Sbjct: 1101 VHNAFLHGDLEEEVYMKLPPGFRHS-HPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFG 1159
Query: 705 FSHSKSDHSLFIYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSY 764
F S D+SLF Y + N +L+YVDD+++ + + + L+ F+MKDLG L Y
Sbjct: 1160 FVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKY 1219
Query: 765 F 765
F
Sbjct: 1220 F 1220
>At1g70010 hypothetical protein
Length = 1315
Score = 398 bits (1022), Expect = e-111
Identities = 252/738 (34%), Positives = 363/738 (49%), Gaps = 43/738 (5%)
Query: 45 LSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPL 104
L LN+VL P+ NL+ V T I FD S ++D + + +LY +
Sbjct: 323 LILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIV 382
Query: 105 TTTT-SHQST-SPATFAAL-SPTLWHNRLGHPGANVLSFLNKNKFIECKQISSPSICQSC 161
+ SH T S T A++ S LWH RLGHP L ++ ++ ++ C+ C
Sbjct: 383 DLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVC 442
Query: 162 IYGKHVKLPFSISNSTTSKPFDIIHSDLWTS-PILSSAGHKYYLFFLDDYTNFVWTFPIG 220
K LPF N+ +S+PFD+IH D W + + G++Y+L +DDY+ W + +
Sbjct: 443 HISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLR 502
Query: 221 RKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSP 280
KS V ++ +F ++ QF TTIK + DN E N FTQF H G+V SCP T
Sbjct: 503 NKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELN---FTQFYHSKGIVPYHSCPETPQ 559
Query: 281 QNGKAERKIRAINNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYH 340
QN ERK + I N R+ S +P S+W + YL N LP+ IL P + L
Sbjct: 560 QNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTK 619
Query: 341 RDPSYTHLRVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISR 400
P+Y H++VFGCLCY +K R+ CAF+GYP +GYK DL + II+SR
Sbjct: 620 TVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSR 679
Query: 401 HVIFDETQFPFAKTHTSSTHTYEFLNDSLHPLLHYHLQNDPKQDEPEPRKIESPQPATTP 460
HV+F E FPF + S F P + P + +S +
Sbjct: 680 HVVFHEELFPFLGSDLSQEEQNFF----------------PDLNPTPPMQRQS----SDH 719
Query: 461 ASPINVTNQSILPPSPMSINQLPHPLVSTELTSPTHTPQQIHQEPPRTIATHSMHGIHK- 519
+P + ++ + PS N +P P V T P + ++ + + H I K
Sbjct: 720 VNPSDSSSSVEILPSANPTNNVPEPSVQTS-HRKAKKPAYLQDYYCHSVVSSTPHEIRKF 778
Query: 520 --------PKIQFNLTTSITSSPLPHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRP 571
P + F T P + L W+ AM EFD L TWE+ P
Sbjct: 779 LSYDRINDPYLTFLACLDKTKEPSNYTEAEKL--QVWRDAMGAEFDFLEGTHTWEVCSLP 836
Query: 572 QNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLT 631
+ I WIF+ K SDGS ERYKARLV G +Q G+D +ETFSPV K +++++L
Sbjct: 837 ADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLG 896
Query: 632 IALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFR----DPIHPDYVCLLKKSLYGLKQ 687
+A + QLD+ N FL+G+L E +YM P G+ D + P+ VC LKKSLYGLKQ
Sbjct: 897 VAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQ 956
Query: 688 APRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYVDDIILTASSDVLRRSIM 747
A R WY +F+ +GF S DH+ F+ +L+Y+DDII+ +++D +
Sbjct: 957 ASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILK 1016
Query: 748 SLLASEFAMKDLGTLSYF 765
S + S F ++DLG L YF
Sbjct: 1017 SQMKSFFKLRDLGELKYF 1034
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 397 bits (1019), Expect = e-110
Identities = 238/756 (31%), Positives = 376/756 (49%), Gaps = 45/756 (5%)
Query: 15 SINKNIVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRFTIDNNVTI 74
SI + + +G + I G G I+ + L NVL P+ NLI + T D +
Sbjct: 465 SIVSFVNLPTGPNVRISGVGTVLINKD---IILQNVLFIPEFRLNLISISSLTTDLGTRV 521
Query: 75 EFDPFSFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALSPTLWHNRLGHPG 134
FDP ++D+ G+ L G+LY L T QS + + A + ++WH RLGHP
Sbjct: 522 IFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDT----QSPAISVNAVVDVSVWHKRLGHPS 577
Query: 135 ANVLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFSISNSTTSKPFDIIHSDLWTS-P 193
+ L L++ + + C C K KL F +N+ + F+++H D+W
Sbjct: 578 FSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFS 637
Query: 194 ILSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGT 253
+ + G+KY+L +DD++ W + + KS V ++F +F ++ Q+ T +K + DN
Sbjct: 638 VETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAK 697
Query: 254 EFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHA 313
E FT+F G+V SCP T QN ERK + I N R + S+M +W
Sbjct: 698 ELA---FTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDC 754
Query: 314 LQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPLFPSTAINKLQARSTP 373
+ +L N PS +LS+ +P + L + P Y+ L+ FGCLCY S +K RS
Sbjct: 755 VLTAVFLINRTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRA 814
Query: 374 CAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHTYEFLNDSLHPLL 433
C FLGYP +GYK DL S + ISR+V F E FP A + S+T +D P+
Sbjct: 815 CVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEELFPLASSQQSATTA----SDVFTPMD 870
Query: 434 HYHLQNDPKQDEPEPRKIESPQPATTPASPINVTNQSILPPSPMSINQLPHPLVSTELTS 493
N P P+ SP ++ + P + V+ + +
Sbjct: 871 PLSSGNSITSHLPSPQ-----------ISPSTQISKRRITKFPAHLQDYHCYFVNKDDSH 919
Query: 494 PTHTPQQIHQEPPRTIATHSMHGIHKPKIQFNLTTSITSSPLPHNPKAALSDSNWKAAML 553
P + Q P +H ++ +I+ P+P + A W A+
Sbjct: 920 PISSSLSYSQISP----SHMLY-----------INNISKIPIPQSYHEAKDSKEWCGAID 964
Query: 554 DEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VGVDC 613
E A+ + TWE+ P + W+F K +DGS ER+KAR+V G +Q G+D
Sbjct: 965 QEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDY 1024
Query: 614 DETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRD----P 669
ETFSPV K T++++L ++ SK W ++QLD+ N FL+G+L+ET+YM P G+ D
Sbjct: 1025 TETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTS 1084
Query: 670 IHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLY 729
+ P+ VC LKKS+YGLKQA R W+ +F++ +GF DH+LF+ G++ +L+Y
Sbjct: 1085 LPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVY 1144
Query: 730 VDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
VDDI++ ++++ +S+ L + F +++LG L YF
Sbjct: 1145 VDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYF 1180
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 394 bits (1012), Expect = e-109
Identities = 269/792 (33%), Positives = 389/792 (48%), Gaps = 86/792 (10%)
Query: 45 LSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPL 104
+SL+NVL+ P L +LI V + F ++D + + + +Y L
Sbjct: 434 VSLSNVLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYL 493
Query: 105 T---TTTSHQSTSPATFAALSPTLWHNRLGHPGANVLSFLNKNKFIECKQISSPSICQSC 161
T TTT H+ A LWH RLGHP +VLS L C +SS S C C
Sbjct: 494 TDAATTTVHKVDITTDHA-----LWHQRLGHPSFSVLSSLPLFSGSSCS-VSSRS-CDVC 546
Query: 162 IYGKHVKLPFSISNSTTSKPFDIIHSDLWTS-PILSSAGHKYYLFFLDDYTNFVWTFPIG 220
K + F S++ ++ F +IH D+W + SS G Y+L +DD++ VWT+ +
Sbjct: 547 FRAKQTREVFPDSSNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLL 606
Query: 221 RKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSP 280
KS+V S+ ++F A+ + QFG ++K + DNGTEF + + + G+V + SC T
Sbjct: 607 AKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFM--CLSSYFKEQGIVHQTSCVGTPQ 664
Query: 281 QNGKAERKIRAINNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYH 340
QNG+ ERK R I N R L +S+P FW A+ YL N PS I + SP + L+
Sbjct: 665 QNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYELLHG 724
Query: 341 RDPSYTHLRVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISR 400
P Y LRVFG CY + +K RS C F+GYP +G+K YDLS+ + I+SR
Sbjct: 725 CKPDYDQLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVSR 784
Query: 401 HVIFDETQFPFAKTHTSSTHT---------------YEFLND--------SLHPLLHYHL 437
V+F E FP+A + +T + L D S P+ ++
Sbjct: 785 DVVFRENVFPYATNEGDTIYTPPVTCPITYDEDWLPFTTLEDRGSDENYLSDPPVCVTNV 844
Query: 438 -QNDPKQDEPE--PRKIESPQPATTPASPINVTNQSILPPSPMSINQLPHPLVST---EL 491
++D + D P+ P ++ P +T +P S SP S N P +T E
Sbjct: 845 SESDTEHDTPQSLPTPVDDPLSPSTSVTPTQTPTNSSSSTSP-STNVSPPQQDTTPIIEN 903
Query: 492 TSPTHTPQQIHQ----------------------EPPRTIATHSMHGIHKPKIQFNLT-- 527
T P +Q+ Q P + ++ S+ G +Q+ LT
Sbjct: 904 TPPRQGKRQVQQPARLKDYILYNASCTPNTPHVLSPSTSQSSSSIQG----NLQYPLTDY 959
Query: 528 --------------TSITSSPLPHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQN 573
+IT++ P + K + W AM E DAL NKTW++V P
Sbjct: 960 ISDECFSAGHKVFLAAITANDEPKHFKEDVKVKVWNDAMYKEVDALEVNKTWDIVDLPTG 1019
Query: 574 VNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIA 633
I S W+++ K +DG+ ERYKARLV G +Q G D ETF+PVVK TT+R +L +
Sbjct: 1020 KVAIGSQWVYKTKFNADGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLRLV 1079
Query: 634 LSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWY 693
+ W ++Q+DV N FLHG+L+E VYM P GFR HPD VC L+KSLYGLKQAPR W+
Sbjct: 1080 AANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHS-HPDKVCRLRKSLYGLKQAPRCWF 1138
Query: 694 QRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLASE 753
++ +D GF D+S F Y +L+YVDD+I+ + + + + L
Sbjct: 1139 KKLSDALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFKEYLGRC 1198
Query: 754 FAMKDLGTLSYF 765
F+MKDLG L YF
Sbjct: 1199 FSMKDLGKLKYF 1210
>At1g57640
Length = 1444
Score = 389 bits (998), Expect = e-108
Identities = 240/688 (34%), Positives = 345/688 (49%), Gaps = 62/688 (9%)
Query: 125 LWHNRLGHPGANVLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFSISNSTTSKPFDI 184
LWH RLGH +++ L + K+I ++C +C+ K + F +S++ + F +
Sbjct: 491 LWHRRLGHASDKIVNLLPRELLSSGKEILE-NVCDTCMRAKQTRDTFPLSDNRSMDSFQL 549
Query: 185 IHSDLW---TSPILSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFG 241
IH D+W +P S +G +Y+L +DDY+ VW + + KS+ F A ++ QF
Sbjct: 550 IHCDVWGPYRAP--SYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFD 607
Query: 242 TTIKCFQCDNGTEF--NNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTS 299
T IK + DNGTEF EYF HK G+ SC T QNG+ ERK R I N R
Sbjct: 608 TEIKIVRSDNGTEFLCMREYFL---HK-GIAHETSCVGTPHQNGRVERKHRHILNIARAL 663
Query: 300 LAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPLF 359
S +P FW + YL N PS +L SP + LY P Y+HLRVFG LCY
Sbjct: 664 RFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHN 723
Query: 360 PSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSST 419
+ +K ARS C F+GYP +G++ +DL +K +SR VIF ET+FP++K +
Sbjct: 724 QNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMSCNEE 783
Query: 420 HTY--------EFLNDSLHP-----------LLHYHLQNDP-----KQDEPEPRKIES-- 453
F+ +++ P + ++ P Q+ P + S
Sbjct: 784 DERVLVDCVGPPFIEEAIGPRTIIGRNIGEATVGPNVATGPIIPEINQESSSPSEFVSLS 843
Query: 454 ----------------PQPATTPASPINVTNQSILPPSPMSINQLPHPLVSTELTSPTHT 497
P +TTPA PI + S PM + VS E SP +
Sbjct: 844 SLDPFLASSTVQTADLPLSSTTPA-PIQLRRSSRQTQKPMKLKNFVTNTVSVESISPEAS 902
Query: 498 PQQIHQEPPRTIATHSMHGIHKPKIQFNLTTSITSSPLPHNPKAALSDSNWKAAMLDEFD 557
++ + + H HK ++T+ P A+ D W+ AM E +
Sbjct: 903 SSSLY-PIEKYVDCHRFTSSHKA-----FLAAVTAGMEPTTYNEAMVDKAWREAMSAEIE 956
Query: 558 ALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VGVDCDETF 617
+L N+T+ +V P + + W+++ K +SDG+ ERYKARLV G Q GVD DETF
Sbjct: 957 SLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETF 1016
Query: 618 SPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCL 677
+PV K +T+R+ L +A ++ W +HQ+DV N FLHG+L+E VYM P GF+ P VC
Sbjct: 1017 APVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCD-DPSKVCR 1075
Query: 678 LKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYVDDIILTA 737
L KSLYGLKQAPR W+ + + GF+ S SD+SLF Y ++L+YVDD+I++
Sbjct: 1076 LHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLIISG 1135
Query: 738 SSDVLRRSIMSLLASEFAMKDLGTLSYF 765
S S L S F MKDLG L YF
Sbjct: 1136 SCPDAVAQFKSYLESCFHMKDLGLLKYF 1163
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 379 bits (973), Expect = e-105
Identities = 247/777 (31%), Positives = 372/777 (47%), Gaps = 69/777 (8%)
Query: 9 STYSNL--SINKNIVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRF 66
S +S+L S+ + + +G + I G G ++ + L NVL P+ NLI +
Sbjct: 446 SLFSSLDTSVLSAVNLPTGPTVKISGVGTLKLNDD---ILLKNVLFIPEFRLNLISISSL 502
Query: 67 TIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALSPTLW 126
T D + FD S ++D+ G L + +LY L S + A + ++W
Sbjct: 503 TDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDVGDQSISVN----AVVDISMW 558
Query: 127 HNRLGHPGANVLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFSISNSTTSKPFDIIH 186
H RLGH L ++ + + C C K KL F SN + FD++H
Sbjct: 559 HRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLH 618
Query: 187 SDLWTS-PILSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIK 245
D+W + + G+KY+L +DD++ W + + KS+V ++F +F ++ Q+ +K
Sbjct: 619 IDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVK 678
Query: 246 CFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSM 305
+ DN E FT F + G+V SCP T QN ERK + I N R + S +
Sbjct: 679 AVRSDNAPELK---FTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQV 735
Query: 306 PPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPLFPSTAIN 365
P S W + +L N PS++L + +P + L P Y LR FGCLCY +
Sbjct: 736 PLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRH 795
Query: 366 KLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHTYEFL 425
K Q RS C FLGYP ++GYK DL S + ISR+V F E FP AK S
Sbjct: 796 KFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGS-------- 847
Query: 426 NDSLHPLLHYHLQNDPKQDEPEPRKIESPQPATTPASPIN--VTNQSILPPS--PMSINQ 481
ES TP P++ + + + PS P I+
Sbjct: 848 --------------------------ESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISD 881
Query: 482 LPHPLVSTELTSP--------THTPQQIHQEP-PRTIATHSMHGIHKPKIQFNLTTSITS 532
LP + S + P +T Q H+ P TI+ + H I +IT
Sbjct: 882 LPPQISSQRVRKPPAHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYI-----NNITK 936
Query: 533 SPLPHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGS 592
P+P N A W A+ E A+ K TWE+ P+ + W+F K +DG+
Sbjct: 937 IPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGN 996
Query: 593 FERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHG 652
ERYKARLV G +Q G+D +TFSPV K TTI+++L ++ SK W + QLDV N FL+G
Sbjct: 997 LERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNG 1056
Query: 653 ELQETVYMHQPMGFRDP---IHPDYVCL-LKKSLYGLKQAPRAWYQRFADFAFTIGFSHS 708
EL+E ++M P G+ + + P V L LK+S+YGLKQA R W+++F+ ++GF +
Sbjct: 1057 ELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKT 1116
Query: 709 KSDHSLFIYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
DH+LF+ + +L+YVDDI++ ++S+ + L F ++DLG L YF
Sbjct: 1117 HGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYF 1173
>At1g36620 hypothetical protein
Length = 1152
Score = 376 bits (965), Expect = e-104
Identities = 236/711 (33%), Positives = 352/711 (49%), Gaps = 30/711 (4%)
Query: 45 LSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPL 104
+ L +VL P L LI V R + + F ++D + + + + +Y L
Sbjct: 433 MKLTHVLFVPDLSCTLISVARLLRELHCFAIFTDKVCVIQDRTSKMLIGVGTESNGVYHL 492
Query: 105 TTTTSHQSTSPATFAALSPTLWHNRLGHPGANVLSFL--NKNKFIECKQISSPSICQSCI 162
+++ + LWH RLGHP + VLS + + F C +IC C+
Sbjct: 493 QRAEVVATSANVVKWKTNKALWHMRLGHPSSKVLSSVLPSLEDFDSCSS-DLKTICDVCV 551
Query: 163 YGKHVKLPFSISNSTTSKPFDIIHSDLWTS-PILSSAGHKYYLFFLDDYTNFVWTFPIGR 221
K + FS S + + F IH D+W SS G Y+L +DD++ VW +
Sbjct: 552 RAKQTRASFSESFNKAEECFSFIHYDVWGPYKHASSCGAHYFLTIVDDHSRAVWIHLMLA 611
Query: 222 KSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTEFNN--EYFTQFCHKNGMVFRFSCPHTS 279
KS+V S+ F A QF +K + +NGTEF + YF + G+V + SC +T
Sbjct: 612 KSEVASLLQQFIAMASRQFNKQVKTVRSNNGTEFMSLKSYFAE----RGIVHQISCVYTH 667
Query: 280 PQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLY 339
QNG+ ERK R I N R+ L + +P SFW ++ YL N P+ IL +P + LY
Sbjct: 668 QQNGRVERKHRHILNVARSLLFQAELPISFWEESVLTAAYLINRTPTPILDGKTPYKILY 727
Query: 340 HRDPSYTHLRVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIIS 399
+ PSY LRVFG LC+ + ++K Q R C F+GYP +G++ YD+ S+ +S
Sbjct: 728 SQPPSYASLRVFGSLCFARKHTGRLDKFQERGRKCIFVGYPHGQKGWRIYDIESQIFFVS 787
Query: 400 RHVIFDETQFPFAKTHTSSTHTYE--FLNDSLHP----LLHYHLQNDPKQDEPEPRKIES 453
R V+F E FPFA T + + + P L + D P P I+
Sbjct: 788 RDVVFQEDIFPFADKKNKDTFSSPAAVIPSPILPYDDEFLDIYQIGDVPATNPLPAIIDV 847
Query: 454 PQPATTPASPINVTNQSILPPSPM---------SINQLPHPLVSTELTSPTHTPQQIHQE 504
+ P+SPI + P P+ ++ + S + S T T
Sbjct: 848 ND--SPPSSPIITATPAAASPPPLRRGLRQRQENVRLKDYQTYSAQCES-TQTLSDNIGT 904
Query: 505 PPRTIATHSMHGIHKPKIQFNLTTSITSSPLPHNPKAALSDSNWKAAMLDEFDALIKNKT 564
+A + I P Q L P P A+ + W+ A+ E DAL T
Sbjct: 905 CIYPMANYVSGEIFSPSNQHFLAAISMVDP-PQTYNQAIREKEWRNAVFFEVDALEDQGT 963
Query: 565 WELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPT 624
W++ PQ V I S W+FR K S+G+ ERYKARLV G Q G+D +TF+PVVK
Sbjct: 964 WDITKLPQGVKAIGSKWVFRIKYNSNGTVERYKARLVALGNHQKEGIDFTKTFAPVVKMQ 1023
Query: 625 TIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYG 684
T+R++L +A +K W +HQ+DV N FLHG+L+E +YM P GF+ P VC LKKS+YG
Sbjct: 1024 TVRLLLDVAAAKDWELHQMDVHNAFLHGDLKEDIYMKPPPGFK-TTDPSLVCKLKKSIYG 1082
Query: 685 LKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYVDDIIL 735
LKQAPR W+++ + GF+ SK D+SLF +G+ + ++++YVDD+++
Sbjct: 1083 LKQAPRCWFEKLSTSLLKFGFTQSKKDYSLFTSIRGSKVLHVIVYVDDVVI 1133
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 374 bits (960), Expect = e-103
Identities = 226/674 (33%), Positives = 335/674 (49%), Gaps = 45/674 (6%)
Query: 125 LWHNRLGHPGANVLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFSISNSTTSKPFDI 184
LWH+R+GHP A V+S + ++ + C C K + F +S + T + F++
Sbjct: 391 LWHSRMGHPAARVVSLIPESS-VSVSSTHLNKACDVCHRAKQTRNSFPLSINKTLRIFEL 449
Query: 185 IHSDLW---TSPILSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFG 241
I+ DLW +P S G +Y+L +DDY+ VW + + KS+ P +F A QF
Sbjct: 450 IYCDLWGPYRTP--SHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQFN 507
Query: 242 TTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLA 301
IK + DNGTEF T+F + G++ SC T +N + ERK R + N R
Sbjct: 508 VKIKTVRSDNGTEFL--CLTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRF 565
Query: 302 HSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPLFPS 361
+++P FW + YL N PS +L+ +P + L+ + P + HLRVFG LCY +
Sbjct: 566 QANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFDHLRVFGSLCYAHNRN 625
Query: 362 TAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHT 421
+K RS C F+GYP +G++ +DL + +SR V+F E +FPF +H +
Sbjct: 626 RGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSELEFPFRISHEQNVIE 685
Query: 422 YEFLNDSLHPLLHYHLQNDPKQDEPEPRKIESPQPATTPASPINVTNQSI----LPPSPM 477
E L + + ++E + P P +SPI+ + S SP+
Sbjct: 686 EE------EEALWAPIVDGLIEEEVHLGQNAGPTPPICVSSPISPSATSSRSEHSTSSPL 739
Query: 478 SINQLPHPLVSTELTSPTHTPQQIHQEP-----PRTIATHSMHGIHKPKIQ--------F 524
+P P ST S +P + P P T + + P+ Q
Sbjct: 740 DTEVVPTPATSTTSASSPSSPTNLQFLPLSRAKPTTAQAVAPPAVPPPRRQSTRNKAPPV 799
Query: 525 NLTTSITSSPLPHNPKAALSDSNWKAAMLDE-------------FDALIKNKTWELVPRP 571
L + ++ + + L+ ++ D+ DA +N TW + P
Sbjct: 800 TLKDFVVNTTVCQESPSKLNSILYQLQKRDDTRRFSASHTTYVAIDAQEENHTWTIEDLP 859
Query: 572 QNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLT 631
I S W+++ K SDGS ERYKARLV G Q G D ETF+PV K T+R+ L
Sbjct: 860 PGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAPVAKMATVRLFLD 919
Query: 632 IALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRA 691
+A+ ++W IHQ+DV N FLHG+L+E VYM P GF + HP+ VC L+K+LYGLKQAPR
Sbjct: 920 VAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGF-EASHPNKVCRLRKALYGLKQAPRC 978
Query: 692 WYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLA 751
W+++ GF S +D+SLF KG+ IL+YVDD+I+T +S + LA
Sbjct: 979 WFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDLIITGNSQRATQQFKEYLA 1038
Query: 752 SEFAMKDLGTLSYF 765
S F MKDLG L YF
Sbjct: 1039 SCFHMKDLGPLKYF 1052
>At3g61330 copia-type polyprotein
Length = 1352
Score = 363 bits (933), Expect = e-100
Identities = 237/770 (30%), Positives = 374/770 (47%), Gaps = 59/770 (7%)
Query: 6 GTLSTYSNL--SINKNIVVGSGQEIPIRGYGQTYISPPYPPLS-LNNVLHAPKLIKNLIF 62
G S ++ L S+ N+ +G ++ ++G G I ++NV + P + N++
Sbjct: 347 GRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILS 406
Query: 63 VRRFTIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALS 122
+ + ++ I + S+ D ++ + S ++ L + S
Sbjct: 407 LGQL-LEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEES 465
Query: 123 PTLWHNRLGHPGANVLSFLNKNKFIE-CKQISSPS-ICQSCIYGKHVKLPF-SISNSTTS 179
LWH R GH L L++ + + I+ P+ +C+ C+ GK K+ F S+S
Sbjct: 466 -WLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQ 524
Query: 180 KPFDIIHSDLWTSPILSSAGHK-YYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKT 238
KP ++IH+D+ S G Y+L F+DD++ W + + KS+V IF F A ++
Sbjct: 525 KPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEK 584
Query: 239 QFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRT 298
+ G IK + D G EF ++ F ++C NG+ + + P + QNG ERK R I R+
Sbjct: 585 ESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARS 644
Query: 299 SLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPL 358
L +P W A+ YL N P+K +S +P + R P +HLRVFG + +
Sbjct: 645 MLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAH 704
Query: 359 FPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSS 418
P +KL +S F+GY N +GYK Y+ +KK IISR+++FDE S+
Sbjct: 705 VPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEG---EWDWNSN 761
Query: 419 THTYEFLNDSLHPLLHYHLQNDPKQDEPEPRKIESP--QPATTPASPINVTNQSILPPSP 476
Y F H+ ++DEPEP + E P +P T P SP +
Sbjct: 762 EEDYNFFP-------HF------EEDEPEPTREEPPSEEPTTPPTSPTS----------- 797
Query: 477 MSINQLPHPLVSTELTSPTHTPQQIHQEPPRTIATHSMHGIHKPKIQFNLTT-SITSSPL 535
+Q+ S+E T + Q++++ Q NLT + +
Sbjct: 798 ---SQIEES--SSERTPRFRSIQELYEVTEN---------------QENLTLFCLFAECE 837
Query: 536 PHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFER 595
P + + A+ W+ AM +E ++ KN TWEL P I W+++ KK S G ER
Sbjct: 838 PMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVER 897
Query: 596 YKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQ 655
YKARLV G SQ VG+D DE F+PV + T+R+++++A W IHQ+DVK+ FL+G+L+
Sbjct: 898 YKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLE 957
Query: 656 ETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLF 715
E VY+ QP G+ D V LKK LYGLKQAPRAW R + F +H+L+
Sbjct: 958 EEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALY 1017
Query: 716 IYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
I + D+ LYVDD+I T ++ + + EF M D+G +SY+
Sbjct: 1018 IKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYY 1067
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 362 bits (929), Expect = e-100
Identities = 236/770 (30%), Positives = 374/770 (47%), Gaps = 59/770 (7%)
Query: 6 GTLSTYSNL--SINKNIVVGSGQEIPIRGYGQTYISPPYPPLS-LNNVLHAPKLIKNLIF 62
G S ++ L S+ N+ +G ++ ++G G I ++NV + P + N++
Sbjct: 347 GRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILS 406
Query: 63 VRRFTIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALS 122
+ + ++ I + S+ D ++ + S ++ L + S
Sbjct: 407 LGQL-LEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEES 465
Query: 123 PTLWHNRLGHPGANVLSFLNKNKFIE-CKQISSPS-ICQSCIYGKHVKLPF-SISNSTTS 179
LWH R GH L L++ + + I+ P+ +C+ C+ G K+ F S+S
Sbjct: 466 -WLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQ 524
Query: 180 KPFDIIHSDLWTSPILSSAGHK-YYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKT 238
KP ++IH+D+ S G Y+L F+DD++ W + + KS+V IF F A ++
Sbjct: 525 KPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEK 584
Query: 239 QFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRT 298
+ G IK + D+G EF ++ F ++C NG+ + + P + QNG AERK R I R+
Sbjct: 585 ESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARS 644
Query: 299 SLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPL 358
L +P W A+ YL N P+K +S +P + R P +HLRVFG + +
Sbjct: 645 MLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAH 704
Query: 359 FPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSS 418
P NKL +S F+GY N +GYK Y+ +KK IISR+++FDE S+
Sbjct: 705 VPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEG---EWDWNSN 761
Query: 419 THTYEFLNDSLHPLLHYHLQNDPKQDEPEPRKIESP--QPATTPASPINVTNQSILPPSP 476
Y F H+ ++D+PEP + E P +P T P SP +
Sbjct: 762 EEDYNFFP-------HF------EEDKPEPTREEPPSEEPTTPPTSPTS----------- 797
Query: 477 MSINQLPHPLVSTELTSPTHTPQQIHQEPPRTIATHSMHGIHKPKIQFNLTT-SITSSPL 535
+Q+ S+E T + Q++++ Q NLT + +
Sbjct: 798 ---SQIEES--SSERTPRFRSIQELYEVTEN---------------QENLTLFCLFAECE 837
Query: 536 PHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFER 595
P + + A+ W+ AM +E ++ KN TWEL P I W+++ KK S G ER
Sbjct: 838 PMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVER 897
Query: 596 YKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQ 655
YKARLV G SQ G+D DE F+PV + T+R+++++A W IHQ+DVK+ FL+G+L+
Sbjct: 898 YKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLE 957
Query: 656 ETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLF 715
E VY+ QP G+ D V LKK LYGLKQAPRAW R + F +H+L+
Sbjct: 958 EEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALY 1017
Query: 716 IYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
I + D+ LYVDD+I T ++ + + EF M D+G +SY+
Sbjct: 1018 IKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYY 1067
>At1g48710 hypothetical protein
Length = 1352
Score = 356 bits (914), Expect = 3e-98
Identities = 234/770 (30%), Positives = 372/770 (47%), Gaps = 59/770 (7%)
Query: 6 GTLSTYSNL--SINKNIVVGSGQEIPIRGYGQTYISPPYPPLS-LNNVLHAPKLIKNLIF 62
G S ++ L S+ N+ +G ++ ++G G I ++NV + P + N++
Sbjct: 347 GRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILS 406
Query: 63 VRRFTIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALS 122
+ + ++ I + S+ D ++ + S ++ L + S
Sbjct: 407 LGQL-LEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEES 465
Query: 123 PTLWHNRLGHPGANVLSFLNKNKFIE-CKQISSPS-ICQSCIYGKHVKLPF-SISNSTTS 179
LWH R GH L L++ + + I+ P+ +C+ C+ GK K+ F S+S
Sbjct: 466 -WLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQ 524
Query: 180 KPFDIIHSDLWTSPILSSAGHK-YYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKT 238
K ++IH+D+ S G Y+L F+DD++ W + + KS+V IF F A ++
Sbjct: 525 KSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEK 584
Query: 239 QFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRT 298
+ G IK + D G EF ++ F ++C NG+ + + P + QNG AERK R I R+
Sbjct: 585 ESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARS 644
Query: 299 SLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPL 358
L +P W A+ YL N P+K +S +P + R +HLRVFG + +
Sbjct: 645 MLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAH 704
Query: 359 FPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSS 418
P +KL +S F+GY N +GYK Y+ +KK IISR+++FDE S+
Sbjct: 705 VPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEG---EWDWNSN 761
Query: 419 THTYEFLNDSLHPLLHYHLQNDPKQDEPEPRKIESP--QPATTPASPINVTNQSILPPSP 476
Y F H+ ++DEPEP + E P +P T P SP +
Sbjct: 762 EEDYNFFP-------HF------EEDEPEPTREEPPSEEPTTPPTSPTS----------- 797
Query: 477 MSINQLPHPLVSTELTSPTHTPQQIHQEPPRTIATHSMHGIHKPKIQFNLTT-SITSSPL 535
+Q+ S+E T + Q++++ Q NLT + +
Sbjct: 798 ---SQIEES--SSERTPRFRSIQELYEVTEN---------------QENLTLFCLFAECE 837
Query: 536 PHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFER 595
P + + A+ W+ AM +E ++ KN TWEL P I W+++ KK S G ER
Sbjct: 838 PMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVER 897
Query: 596 YKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQ 655
YKARLV G Q G+D DE F+PV + T+R+++++A W IHQ+DVK+ FL+G+L+
Sbjct: 898 YKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLE 957
Query: 656 ETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLF 715
E VY+ QP G+ D V LKK+LYGLKQAPRAW R + F +H+L+
Sbjct: 958 EEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALY 1017
Query: 716 IYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
I + D+ LYVDD+I T ++ + + EF M D+G +SY+
Sbjct: 1018 IKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYY 1067
>At4g17450 retrotransposon like protein
Length = 1433
Score = 351 bits (901), Expect = 1e-96
Identities = 238/761 (31%), Positives = 353/761 (46%), Gaps = 101/761 (13%)
Query: 28 IPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPFSFSVEDIQ 87
+ I G G +S +SL+NVL+ P+ NLI ++
Sbjct: 468 VKIAGIGFIQLSDA---ISLHNVLYIPEFKFNLI----------------------SELT 502
Query: 88 TGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALSPTL------------WHNRLGHPGA 135
+ + R G+LY L ++ + S ++ P WH RLGHP
Sbjct: 503 KELMIGRGSQVGNLYVLDFNENNHTVSLKGTTSMCPEFSVCSSVVVDSVTWHKRLGHPAY 562
Query: 136 NVLSFLNKNKFIECKQIS---SP--SICQSCIYGKHVKLPFSISNSTTSKPFDIIHSDLW 190
+ + L+ ++ K+I+ SP +C C K L F + S FD++H D W
Sbjct: 563 SKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCSAAFDLVHIDTW 622
Query: 191 TSPILSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCFQCD 250
F + W + + KS V +F +F + TQ+ T +K + D
Sbjct: 623 GP-------------FSVPTNDATWIYLLKNKSDVLHVFPAFINMVHTQYQTKLKSVRSD 669
Query: 251 NGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFW 310
N E FT +G+V SCP T QN ERK + I N R L S++P FW
Sbjct: 670 NAHELK---FTDLFAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEFW 726
Query: 311 HHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPLFPSTAINKLQAR 370
+ +L N LP+ +L++ SP + L + P+Y L+ FGCLCY +K + R
Sbjct: 727 GDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPR 786
Query: 371 STPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHTYEFLNDSLH 430
+ C FLGYP ++GYK D+ + + ISRHVIF E FPF + T +F
Sbjct: 787 ARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFPFISS-TIKDDIKDFF----- 840
Query: 431 PLLHYHLQNDPKQDEPEPRKIESPQPATTPASPINVTNQSILPPSPMSINQLPHPLVSTE 490
PLL + PA T P+ T+ I+ PH VS+
Sbjct: 841 PLLQF--------------------PARTDDLPLEQTS---------IIDTHPHQDVSSS 871
Query: 491 LTSPTHTPQQIHQE-PPRTIAT-HSMHGIHKPKIQFNLTTSITSSPLPHNPKAALSDSNW 548
P Q+ PP+ + H + +P F +IT++ +P A W
Sbjct: 872 KALVPFDPLSKRQKKPPKHLQDFHCYNNTTEPFHAF--INNITNAVIPQRYSEAKDFKAW 929
Query: 549 KAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ* 608
AM +E A+++ TW +V P N I W+F K +DGS ERYKARLV G +Q
Sbjct: 930 CDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQE 989
Query: 609 VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRD 668
G+D +ETFSPV K T++R++L +A W +HQLD+ N FL+G+L E +YM P G+ D
Sbjct: 990 EGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYAD 1049
Query: 669 ----PIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMT 724
+ P +C L KS+YGLKQA R WY + ++ +GF S +DH+LFI +
Sbjct: 1050 LVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLM 1109
Query: 725 YILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
+L+YVDDI++ ++SD + L S F ++DLG YF
Sbjct: 1110 GVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYF 1150
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 348 bits (892), Expect = 1e-95
Identities = 236/738 (31%), Positives = 358/738 (47%), Gaps = 61/738 (8%)
Query: 47 LNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPLTT 106
L NV + P++ +NL+ + F E +SF +E+ I GD LT
Sbjct: 343 LTNVRYIPEMDRNLLSLGTF--------EKSGYSFKLENGTLSI------IAGDSVLLTV 388
Query: 107 TTSHQ----STSPATFAALSPT-------LWHNRLGHPGANVLSFLNKNKFIECKQISSP 155
+ P T +LS LWH RLGH + L K ++ K++S
Sbjct: 389 RRCYTLYLLQWRPVTEESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKL 448
Query: 156 SICQSCIYGKHVKLPFSISNSTTSKPFDIIHSDLWTSPIL--SSAGHKYYLFFLDDYTNF 213
C+ CIYGK ++ F+++ T + + +HSDLW +P + S +Y++ F+DDYT
Sbjct: 449 ETCEDCIYGKAKRIGFNLAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRK 508
Query: 214 VWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRF 273
V + + K + F + ++ Q IK + DNG EF N F +FC + G+++
Sbjct: 509 VRIYFLKTKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHR 568
Query: 274 SCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHS 333
+C +T QNG AER R + +R+ L+ S +P FW A T L N PS L++
Sbjct: 569 TCAYTPQQNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEV 628
Query: 334 PTQYLYHRDPSYTHLRVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSS 393
P + + P Y++LR FGC+ F T KL R+ +GYP +GYK + L
Sbjct: 629 PDKRWSGKSPIYSYLRRFGCIA---FVHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLEE 685
Query: 394 KKIIISRHVIFDETQFPFAKTHTSSTHTYEFLNDSLHPLLHYHLQNDPKQ------DEP- 446
KK ++SR+VIF E + + E + P + L D ++ D+P
Sbjct: 686 KKCVVSRNVIFQENA---SYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPI 742
Query: 447 -EPRKIESPQPATTPASPINVTNQSILPPSPMSINQLPHPLVSTELTSPTHTPQQIHQEP 505
E + +P PATT V +++ + SP+S + LV P + E
Sbjct: 743 VEAQSPFNPSPATTQTYSEGVNSETDIIQSPLS-----YQLVRDRDRRTIRAPVRFDDED 797
Query: 506 PRTIATHSMHGIHKPKIQFNLTTSITSSPLPHN-PKAALSDSNWKAAMLDEFDALIKNKT 564
+ + + S P ++ K +++ + WK AM +E ++ IKN T
Sbjct: 798 ------------YLAEALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHT 845
Query: 565 WELVPRPQNVNFIRSMWIFRHKKKSDGSFE-RYKARLVGDGRSQ*VGVDCDETFSPVVKP 623
W +V RPQ+ I S WI++ K G E R+KARLV G +Q G+D E F+PVVK
Sbjct: 846 WTVVKRPQHQKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKH 905
Query: 624 TTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLY 683
+IRI+++I + + QLDVK FLHGEL+E +YM P G+ + D VCLL KSLY
Sbjct: 906 VSIRILMSIVAQEDLELEQLDVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLY 965
Query: 684 GLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYR-KGNDMTYILLYVDDIILTASSDVL 742
GLKQAP+ W ++F + IGF S D +I Y+LLYVDD+++ A +
Sbjct: 966 GLKQAPKQWNEKFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKED 1025
Query: 743 RRSIMSLLASEFAMKDLG 760
+ L+ F MKDLG
Sbjct: 1026 ISQLKEELSQRFDMKDLG 1043
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 343 bits (881), Expect = 2e-94
Identities = 238/781 (30%), Positives = 370/781 (46%), Gaps = 51/781 (6%)
Query: 1 MTASQGTLSTYSNLSINKNIVVGSGQEIPIRGYGQTYI-SPPYPPLSLNNVLHAPKLIKN 59
MT + + LS + + +G+ P++G G I + + L +V + P + +N
Sbjct: 295 MTPRKDWFKDFKELS-SGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRN 353
Query: 60 LIFVRRFTIDNNVTIEFDPFSFSVED-----IQTGIPLMRCDSTGDLYPLTTTTSHQSTS 114
LI + T+E F +D ++ +++ LY L T +
Sbjct: 354 LISLG--------TLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDGVTEEGESH 405
Query: 115 PATFAALSPTLWHNRLGHPGANVLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFSIS 174
+ LWH+RLGH + L K + + I C+ C+YGK ++ F+ +
Sbjct: 406 SSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFAPA 465
Query: 175 NSTTSKPFDIIHSDLWTSPI--LSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSF 232
T + +HSDLW SP S +Y++ F+DDY+ VW + + +K + F +
Sbjct: 466 QHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEW 525
Query: 233 HAFIKTQFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAI 292
++ Q +K + DNG E+ N YF +FC + G+V +C +T QNG AER R I
Sbjct: 526 KKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTI 585
Query: 293 NNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFG 352
+ +R+ L+ S M FW A YL N PS ++ P + P + LR FG
Sbjct: 586 MDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFG 645
Query: 353 CLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIF-DETQFPF 411
CL Y KL RS F YP+ +GYK + L KK +ISR+VIF ++ F
Sbjct: 646 CLAYIHADQ---GKLNPRSKKGIFTSYPEGVKGYKVWVLEDKKCVISRNVIFREQVMFKD 702
Query: 412 AKTHTSSTHTYEFLNDSLHPLLHYHLQNDPKQDEPE-------PRKIESPQPATTPASPI 464
K + +T + L D L+ +P ++ E + +P ATT +P+
Sbjct: 703 LKGDSQNTISESDLED---------LRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNPV 753
Query: 465 NVTNQSILPPSPMSINQLPHPLVSTELTSPTHTPQQIHQEPPRTIATHSMHGIHKPKIQF 524
SP ++ T Q + RTI + + + F
Sbjct: 754 L--------NSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYN-ESNMVGF 804
Query: 525 NLTTSITSSPLPHNPKAALSDSNWK---AAMLDEFDALIKNKTWELVPRPQNVNFIRSMW 581
+ P P + + AL D +W+ AAM +E ++ KN TW+LV +P+ V I W
Sbjct: 805 AYYSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRW 864
Query: 582 IFRHKKKSDG-SFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPI 640
+F K G R+ ARLV G +Q GVD +E FSPVVK +IR +L++ + + +
Sbjct: 865 VFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMEL 924
Query: 641 HQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFA 700
Q+DVK FLHG L+E +YM QP GF + VCLLK+SLYGLKQ+PR W RF +F
Sbjct: 925 QQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFM 984
Query: 701 FTIGFSHSKSDHSLFIYR-KGNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDL 759
I ++ S D ++ + G+ Y+LLYVDD+++ +++ + LL+ EF MKDL
Sbjct: 985 RGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDL 1044
Query: 760 G 760
G
Sbjct: 1045 G 1045
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 342 bits (877), Expect = 6e-94
Identities = 236/732 (32%), Positives = 353/732 (47%), Gaps = 48/732 (6%)
Query: 47 LNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPFSFSVED----IQTGIPLMRCDSTGDLY 102
L NV + P + +NL+ + F E + F ED I+ G ++ D
Sbjct: 365 LTNVRYIPDMDRNLLSLGTF--------EKAGYKFESEDGILRIKAGNQVLLTGRRYDTL 416
Query: 103 PLTTTTSHQSTSPATFAALSPT-LWHNRLGHPGANVLSFLNKNKFIECKQISSPSICQSC 161
L S S A T LWH RL H + L + F++ K++SS +C+ C
Sbjct: 417 YLLNWKPVASESLAVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDC 476
Query: 162 IYGKHVKLPFSISNSTTSKPFDIIHSDLWTSPI--LSSAGHKYYLFFLDDYTNFVWTFPI 219
IYGK + FS+++ T + + IHSDLW +P LS +Y++ +DD+T VW + +
Sbjct: 477 IYGKAKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFM 536
Query: 220 GRKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTS 279
K + F + ++ Q +K + DNG EF N+ F FC G+ +C +T
Sbjct: 537 KTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTP 596
Query: 280 PQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQYLY 339
QNG AER R I +R+ L+ S +P FW A T L N PS L+ P +
Sbjct: 597 QQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKWS 656
Query: 340 HRDPSYTHLRVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIIS 399
P Y++LR +GC+ F T KL+ R+ +GYP +GYK + L +K ++S
Sbjct: 657 GNPPVYSYLRRYGCVA---FVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILDERKCVVS 713
Query: 400 RHVIFDETQ-FPFAKTHTSSTHTYEFLNDSLHPLLHYHLQNDPKQDEPEPRKIESPQPAT 458
R++IF E + + T E +D L + L+ + +++ + PA
Sbjct: 714 RNIIFQENAVYKDLMQRQENVSTEE--DDQTGSYLEFDLEAERDVISGGDQEMVNTIPA- 770
Query: 459 TPASPI--NVTNQSILPPSPMSINQLP--HPLVSTELTSPTHTPQQIHQEPPRTIATHSM 514
P SP+ T Q +NQ P + LV P++ E A +
Sbjct: 771 -PESPVVSTPTTQDTNDDEDSDVNQSPLSYHLVRDRDKREIRAPRRFDDEDYYAEALY-- 827
Query: 515 HGIHKPKIQFNLTTSITSSPLPHNPKAALSDSN---WKAAMLDEFDALIKNKTWELVPRP 571
TT + P N + A D+N WK AM +E D+ KN TW +V RP
Sbjct: 828 ------------TTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRP 875
Query: 572 QNVNFIRSMWIFRHKKKSDGSFE-RYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVL 630
+N I WIF++K G E R+KARLV G +Q G+D E F+PVVK +IR++L
Sbjct: 876 ENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLL 935
Query: 631 TIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPR 690
+I + + QLDVK FLHGEL+E +YM P G+ + VCLL K+LYGLKQAP+
Sbjct: 936 SIVAQEDLELEQLDVKTAFLHGELKEKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPK 995
Query: 691 AWYQRFADFAFTIGFSHSKSDHSLF--IYRKGNDMTYILLYVDDIILTASSDVLRRSIMS 748
W ++F +F I F S D + + G+ M Y+L+YVDDI++ + + ++ +
Sbjct: 996 QWNEKFDNFMKEICFVKSAYDSCAYTKVLPDGSVM-YLLIYVDDILVASKNKEAITALKA 1054
Query: 749 LLASEFAMKDLG 760
L F MKDLG
Sbjct: 1055 NLGMRFEMKDLG 1066
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 330 bits (847), Expect = 2e-90
Identities = 224/766 (29%), Positives = 358/766 (46%), Gaps = 59/766 (7%)
Query: 13 NLSINKNIVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRFTIDNNV 72
N SI I V +G + G G + + + NV P L KNL+ V + I +
Sbjct: 347 NKSIKVPIRVRNGDIVMTAGKGDITVMTRHGKRIIKNVFLVPGLEKNLLSVPQI-ISSGY 405
Query: 73 TIEFDPFSFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALSPTLWHNRLGH 132
+ F ++D G +M + T + + ++ + A + WH RLGH
Sbjct: 406 WVRFQDKRCIIQDAN-GKEIMNIEMTDKSFKIKLSSVEEEAMTANVQ--TEETWHKRLGH 462
Query: 133 PGANVLSFLNKNKFIEC--KQISSPSICQSCIYGKHVKLPFSISNST-TSKPFDIIHSDL 189
L + + + + + C++C GK + F + T T + +I+H+D+
Sbjct: 463 VSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGKQSRKSFPKESQTKTREKLEIVHTDV 522
Query: 190 WTSPILSSA--GHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCF 247
P+ + G +YY+ FLDDYT+ W + + +KS+ + F F A ++ Q +IK
Sbjct: 523 -CGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFATFKKFKALVEKQSNCSIKTL 581
Query: 248 QCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPP 307
+ FC G+ + + P++ QNG AERK R++ R+ L +P
Sbjct: 582 RP----------MEVFCEDEGINRQVTLPYSPQQNGAAERKNRSLVEMARSMLVEQDLPL 631
Query: 308 SFWHHALQITTYLQNILPSKILSHH-SPTQYLYHRDPSYTHLRVFGCLCYPLFPSTAINK 366
W A+ + YLQN LPSK + +P + P+ +HLR+FG +CY P K
Sbjct: 632 KLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCGHKPNVSHLRIFGSICYVHIPDQKRRK 691
Query: 367 LQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDET-------QFPFAKTHTSST 419
L A++ +GY +GY+ + L +K+ +SR V+F E Q KT S
Sbjct: 692 LDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSRDVVFQEDKKWDWDKQEEVKKTFVMSI 751
Query: 420 HTYEFLNDSLHPLLHYHLQNDPKQDEPEPRKIESPQPATTPASPINVTNQSILPPSPMSI 479
+ + D H Q D + E + ++ S +N + SP
Sbjct: 752 NDIQESRDQQETSSHDLSQIDDHANNGEG------ETSSHVLSQVNDQEERETSESPKKY 805
Query: 480 NQLPHPLVSTELTSPTHTPQQIHQEPPRTIATHSMHGIHKPKIQFNLTTSITSSPLPHNP 539
+ ++I ++ PR + GI + ++ P
Sbjct: 806 KSM----------------KEILEKAPRMENDEAAQGIE---------ACLVANEEPQTY 840
Query: 540 KAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKAR 599
A D W+ AM +E + KN+TW+LV +P+ N I WI++ K + G+ ++KAR
Sbjct: 841 DEARGDKEWEEAMNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKTDASGNHVKHKAR 900
Query: 600 LVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVY 659
LV G SQ G+D ETF+PV + TIR +L A W ++Q+DVK+ FL+GEL+E VY
Sbjct: 901 LVARGFSQEYGIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAFLNGELEEEVY 960
Query: 660 MHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRK 719
+ QP GF + V L K+LYGLKQAPRAWY+R + GF+ S +D +L+ +K
Sbjct: 961 VTQPPGFVIEGKEEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSMNDAALYSKKK 1020
Query: 720 GNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
G D+ + LYVDD+I+T ++ L + + EF M DLG L+YF
Sbjct: 1021 GEDVLIVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYF 1066
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.332 0.142 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,344,227
Number of Sequences: 26719
Number of extensions: 1047448
Number of successful extensions: 4314
Number of sequences better than 10.0: 161
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 3503
Number of HSP's gapped (non-prelim): 446
length of query: 993
length of database: 11,318,596
effective HSP length: 109
effective length of query: 884
effective length of database: 8,406,225
effective search space: 7431102900
effective search space used: 7431102900
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144645.3