BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144592.7 + phase: 0
(129 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61890 homeobox-leucine zipper protein ATHB-12 150 2e-37
At2g46680 homeodomain transcription factor (ATHB-7) 149 4e-37
At3g01470 homeobox protein (HAT5) 109 4e-25
At2g22430 homeodomain transcription factor (ATHB-6) 107 2e-24
At4g40060 homeodomain - like protein 106 3e-24
At5g65310 homeobox-leucine zipper protein ATHB-5 (HD-zip protein... 103 3e-23
At1g69780 homeobox gene 13 protein 102 7e-23
At3g01220 putative homeobox-leucine zipper protein, HAT7 100 2e-22
At5g15150 homeobox protein 100 2e-22
At4g36740 homeodomain protein 94 2e-20
At1g26960 putative DNA-binding protein 94 2e-20
At1g27050 unknown protein 89 6e-19
At5g03790 homeodomain -like protein 89 8e-19
At5g66700 homeodomain transcription factor-like 88 1e-18
At2g18550 putative homeodomain transcription factor 88 1e-18
At2g36610 putative homeodomain transcription factor 86 4e-18
At5g53980 unknown protein 79 8e-16
At2g22800 homeobox protein 70 2e-13
At2g01430 putative homeodomain transcription factor 69 5e-13
At4g37790 homeobox protein (HAT22) 67 2e-12
>At3g61890 homeobox-leucine zipper protein ATHB-12
Length = 235
Score = 150 bits (378), Expect = 2e-37
Identities = 70/101 (69%), Positives = 91/101 (89%)
Query: 23 SISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNK 82
+++ + KK+ N KRF++EQIKSLE +FE+ETRLEPRKK+Q+ARELGLQPRQVAIWFQNK
Sbjct: 19 TMNKKKMKKSNNQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNK 78
Query: 83 RARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQV 123
RARWK+KQLE+EYN L+ +YNNLAS+FE MKKE+Q+L+ ++
Sbjct: 79 RARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSEL 119
>At2g46680 homeodomain transcription factor (ATHB-7)
Length = 258
Score = 149 bits (376), Expect = 4e-37
Identities = 74/115 (64%), Positives = 88/115 (76%)
Query: 9 YSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLAREL 68
YS E + T N +RF+DEQIKSLE MFE+ETRLEPRKK+QLAREL
Sbjct: 7 YSPAMMSAEPFLTMKKMKKSNHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKVQLAREL 66
Query: 69 GLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQV 123
GLQPRQVAIWFQNKRARWKSKQLE EYN L+ +Y+NLAS+FES+KKE+Q L+ ++
Sbjct: 67 GLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSEL 121
>At3g01470 homeobox protein (HAT5)
Length = 272
Score = 109 bits (272), Expect = 4e-25
Identities = 49/93 (52%), Positives = 71/93 (75%)
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
+R T EQ+ LE FETE +LEP +K QLA++LGLQPRQVA+WFQN+RARWK+KQLER+Y
Sbjct: 70 RRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDY 129
Query: 96 NKLQNSYNNLASKFESMKKERQTLLIQVLSIVQ 128
+ L+++Y+ L S ++S+ + L +V S+ +
Sbjct: 130 DLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTE 162
>At2g22430 homeodomain transcription factor (ATHB-6)
Length = 311
Score = 107 bits (267), Expect = 2e-24
Identities = 45/92 (48%), Positives = 73/92 (78%)
Query: 32 NKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQL 91
++ +R + Q+K+LE FE E +LEP +K++LA+ELGLQPRQVA+WFQN+RARWK+KQL
Sbjct: 60 SEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 119
Query: 92 EREYNKLQNSYNNLASKFESMKKERQTLLIQV 123
E++Y L+ Y++L F+S++++ ++LL ++
Sbjct: 120 EKDYGVLKTQYDSLRHNFDSLRRDNESLLQEI 151
>At4g40060 homeodomain - like protein
Length = 294
Score = 106 bits (265), Expect = 3e-24
Identities = 46/95 (48%), Positives = 72/95 (75%)
Query: 32 NKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQL 91
++ +R +Q+K+LE FE E +LEP +K +LA+ELGLQPRQVA+WFQN+RARWK+KQL
Sbjct: 57 SEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQL 116
Query: 92 EREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
E++Y L+ Y++L F+S++++ +LL ++ I
Sbjct: 117 EKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKI 151
>At5g65310 homeobox-leucine zipper protein ATHB-5 (HD-zip protein
ATHB-5) (sp|P46667)
Length = 312
Score = 103 bits (256), Expect = 3e-23
Identities = 53/123 (43%), Positives = 83/123 (67%), Gaps = 4/123 (3%)
Query: 2 EYSQ-YSSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRK 60
+YSQ + + + E+ SS +K + R EQ+K+LE FE + +LEP +
Sbjct: 42 DYSQMFDALEDDGSLEDLGGVGHASSTAAEKKR---RLGVEQVKALEKNFEIDNKLEPER 98
Query: 61 KLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLL 120
K++LA+ELGLQPRQVAIWFQN+RARWK+KQLER+Y L+++++ L +S++++ +LL
Sbjct: 99 KVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLL 158
Query: 121 IQV 123
Q+
Sbjct: 159 GQI 161
>At1g69780 homeobox gene 13 protein
Length = 294
Score = 102 bits (253), Expect = 7e-23
Identities = 50/111 (45%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
Query: 16 EETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQV 75
EE Y+ S M +KK +R EQ+K+LE FE +LEP +K+QLAR LGLQPRQ+
Sbjct: 72 EEDYSDDG-SQMGEKK----RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQI 126
Query: 76 AIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
AIWFQN+RARWK+KQLE++Y+ L+ ++ L ++ + ++ Q L +++ +
Sbjct: 127 AIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGL 177
>At3g01220 putative homeobox-leucine zipper protein, HAT7
Length = 286
Score = 100 bits (250), Expect = 2e-22
Identities = 49/112 (43%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 15 EEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQ 74
+EE + +M +K K R EQ+K+LE FE +LEP +K+QLA+ LG+QPRQ
Sbjct: 71 DEENLSDDGAHTMLGEKKK---RLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQ 127
Query: 75 VAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
+AIWFQN+RARWK++QLER+Y+ L+ + +L S S+ + LL +V+++
Sbjct: 128 IAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVMAL 179
>At5g15150 homeobox protein
Length = 293
Score = 100 bits (249), Expect = 2e-22
Identities = 49/115 (42%), Positives = 76/115 (65%), Gaps = 3/115 (2%)
Query: 12 EAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQ 71
+ GEE+ + M +K K R EQ+++LE FE +LEP +K+QLA+ LGLQ
Sbjct: 75 QVGEEDNLSDDGSHMMLGEKKK---RLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQ 131
Query: 72 PRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
PRQ+AIWFQN+RARWK+KQLER+Y+ L+ ++ L S +S+ + L +++++
Sbjct: 132 PRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELVAL 186
>At4g36740 homeodomain protein
Length = 217
Score = 94.0 bits (232), Expect = 2e-20
Identities = 42/70 (60%), Positives = 56/70 (80%)
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
++ TDEQ+ LE F E +LE +K +LA ELGL PRQVA+WFQN+RARWK+K+LE EY
Sbjct: 58 RKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEY 117
Query: 96 NKLQNSYNNL 105
NKL+NS++N+
Sbjct: 118 NKLKNSHDNV 127
>At1g26960 putative DNA-binding protein
Length = 255
Score = 94.0 bits (232), Expect = 2e-20
Identities = 45/97 (46%), Positives = 68/97 (69%)
Query: 30 KKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSK 89
K + +R EQ+K+LE FE +LE +KL+LAR LGLQPRQ+AIWFQN+RAR K+K
Sbjct: 67 KMGEKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTK 126
Query: 90 QLEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
QLE++Y+ L+ + +L + E ++ + Q L QV+++
Sbjct: 127 QLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQVMAL 163
>At1g27050 unknown protein
Length = 495
Score = 89.0 bits (219), Expect = 6e-19
Identities = 49/120 (40%), Positives = 75/120 (61%), Gaps = 5/120 (4%)
Query: 4 SQYSSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQ 63
S ++ +A EE+ + + + KK+ + T Q++ LE FE E RLEP +KL
Sbjct: 43 SMINTETATMDEEDVCESYMMREITKKR-----KLTPIQLRLLEESFEEEKRLEPDRKLW 97
Query: 64 LARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQV 123
LA +LGLQP QVA+WFQN+RAR+K+KQLE + + L+ SY L + ++ + + QTL +V
Sbjct: 98 LAEKLGLQPSQVAVWFQNRRARYKTKQLEHDCDSLKASYAKLKTDWDILFVQNQTLKSKV 157
>At5g03790 homeodomain -like protein
Length = 236
Score = 88.6 bits (218), Expect = 8e-19
Identities = 40/84 (47%), Positives = 62/84 (73%)
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
KR T Q+ SLE F+ E +L+ +K++L+RELGLQPRQ+A+WFQN+RARWK+KQLE+ Y
Sbjct: 80 KRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLY 139
Query: 96 NKLQNSYNNLASKFESMKKERQTL 119
+ L+ Y+ ++ + + + E + L
Sbjct: 140 DSLRQEYDVVSREKQMLHDEVKKL 163
>At5g66700 homeodomain transcription factor-like
Length = 228
Score = 88.2 bits (217), Expect = 1e-18
Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 8/99 (8%)
Query: 7 SSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLAR 66
S S+ EE+ + I M +K+ + TDEQ+ LE F E +LE +K ++A
Sbjct: 52 SKGSSATNEEDV---AEIGGMLRKR-----KLTDEQVNMLEYSFGNEHKLESGRKEKIAG 103
Query: 67 ELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNL 105
ELGL PRQVA+WFQN+RARWK+K+LE EY KL+N ++N+
Sbjct: 104 ELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNV 142
>At2g18550 putative homeodomain transcription factor
Length = 220
Score = 88.2 bits (217), Expect = 1e-18
Identities = 38/67 (56%), Positives = 54/67 (79%)
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
++ +DEQ++ LE FE + +LE +K +LA ELGL PRQVA+WFQN+RARWK+K++E EY
Sbjct: 63 RKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEY 122
Query: 96 NKLQNSY 102
KL+N+Y
Sbjct: 123 TKLKNAY 129
>At2g36610 putative homeodomain transcription factor
Length = 199
Score = 86.3 bits (212), Expect = 4e-18
Identities = 47/116 (40%), Positives = 74/116 (63%), Gaps = 16/116 (13%)
Query: 14 GEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQL--------A 65
GEE ++S + KKK K+ T EQ+K LE F+ E +L P +K++L +
Sbjct: 59 GEE----SNSFNGQEKKK----KKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLS 110
Query: 66 RELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLI 121
+ELGLQPRQ+A+WFQN++ARWK+KQLE Y L+ ++ ++ + E +++E T +I
Sbjct: 111 KELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDIVSREKELLQEEVITPVI 166
>At5g53980 unknown protein
Length = 156
Score = 78.6 bits (192), Expect = 8e-16
Identities = 43/98 (43%), Positives = 62/98 (62%), Gaps = 3/98 (3%)
Query: 25 SSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRA 84
+S + KNK KR T +Q++ LE F +LEP KLQL+ +LGL RQVA+WFQNKRA
Sbjct: 3 NSQSQGKNKK-KRLTQDQVRQLEKCFTMNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRA 61
Query: 85 RWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQ 122
R+K++ LE ++ LQ+ + A+ + K E Q +Q
Sbjct: 62 RFKTQSLEVQHCTLQSKHE--AALSDKAKLEHQVQFLQ 97
>At2g22800 homeobox protein
Length = 274
Score = 70.5 bits (171), Expect = 2e-13
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 12 EAGEEETYTTSSISSMRKKKN----KNTKRFTDEQIKSLETMFETETRLEPRKKLQLARE 67
E+ EEE T IS + + + R T +Q LE F+ + L P++K LAR+
Sbjct: 87 ESPEEEEMTERVISDYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQ 146
Query: 68 LGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTL 119
L L+PRQV +WFQN+RAR K KQ E + L+ LA + ++KE Q L
Sbjct: 147 LNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQEL 198
>At2g01430 putative homeodomain transcription factor
Length = 162
Score = 69.3 bits (168), Expect = 5e-13
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 10 SAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELG 69
S+E G++E ++ S+ +KK R T EQ + LE F L P++K LA+ L
Sbjct: 6 SSEDGDDEEFSHDDGSAPPRKK----LRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLM 61
Query: 70 LQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTL 119
L+PRQ+ +WFQN+RAR K KQ E E L+ + +L + + +E + L
Sbjct: 62 LRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEEL 111
>At4g37790 homeobox protein (HAT22)
Length = 278
Score = 67.0 bits (162), Expect = 2e-12
Identities = 37/89 (41%), Positives = 51/89 (56%)
Query: 37 RFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYN 96
R T +Q LE F+ + L P++K LAR+L L+PRQV +WFQN+RAR K KQ E +
Sbjct: 129 RLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCE 188
Query: 97 KLQNSYNNLASKFESMKKERQTLLIQVLS 125
L+ L + ++KE Q L LS
Sbjct: 189 FLKKCCETLTDENRRLQKELQDLKALKLS 217
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.310 0.123 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,543,100
Number of Sequences: 26719
Number of extensions: 91580
Number of successful extensions: 644
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 165
length of query: 129
length of database: 11,318,596
effective HSP length: 88
effective length of query: 41
effective length of database: 8,967,324
effective search space: 367660284
effective search space used: 367660284
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC144592.7