BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144541.4 - phase: 0
(412 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47700 unknown protein 235 4e-62
At2g15260 hypothetical protein 89 4e-18
At4g13490 putative protein 82 4e-16
At2g38970 putative retroelement pol polyprotein 44 2e-04
At2g17450 pseudogene 42 5e-04
At5g03450 unknown protein 42 6e-04
At4g18110 hypothetical protein 42 8e-04
At5g41430 unknown protein 41 0.001
At3g62690 RING-H2 zinc finger protein ATL5 41 0.001
At1g72310 RING-H2 zinc finger protein (ATL3) 41 0.001
At1g53820 hypothetical protein 41 0.001
At3g54780 unknown protein 40 0.002
At2g47560 unknown protein (At2g47560) 40 0.003
At1g51930 hypothetical protein 40 0.003
At5g42940 unknown protein 39 0.004
At4g26400 unknown protein 39 0.004
At4g12190 putative protein 39 0.004
At1g53190 RING finger like protein 39 0.004
At4g05350 putative protein 39 0.005
At1g76410 RING zinc finger like protein 39 0.005
>At2g47700 unknown protein
Length = 358
Score = 235 bits (599), Expect = 4e-62
Identities = 150/362 (41%), Positives = 185/362 (50%), Gaps = 52/362 (14%)
Query: 10 GDTRHRKSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRK 69
G+ S V CSICLE V D+G RS AKLQCGHQFHLDCIGSAFN KGAMQCPNCR
Sbjct: 25 GNPEDSSSPVEVSCSICLESVLDDGTRSKAKLQCGHQFHLDCIGSAFNMKGAMQCPNCRN 84
Query: 70 IEKGQWLYANGS-RSYPEFNMEDWTRDDDVYDLSYSEMSLGVHWCPFGNFAQLPSSFEER 128
+EKGQWLYANGS R +PEF+MEDW ++D+Y LSY EM VHWCPFG +Q +SFEE
Sbjct: 85 VEKGQWLYANGSTRPFPEFSMEDWIPEEDLYGLSYPEMQYRVHWCPFGELSQAAASFEEL 144
Query: 129 EYSPIPYHDAPGPMFTEHSAVSSGSHPCPYIAYVGPVHPSTSNSGGTVSEVSNFNHWNAR 188
E + YH H+A + S Y+AYVGP +T + S+ N +
Sbjct: 145 EPATTTYHT---EFHGHHAAAVNHS----YLAYVGPGPAATPRT-------SDNNSTDDH 190
Query: 189 PIHGDMSTSYTVPAVVLHYHSWDHHSSHFSSGSSHL--GAADQPSVSQSNQRPTRGSEAT 246
P + + + V YH HHS FS ++H+ G D S A
Sbjct: 191 PWNSHSNDHFHQLPVAPQYH---HHSPSFSLPAAHVVDGEVD--------------SSAA 233
Query: 247 RSGSYMHPYPVGHSSVARAGNSAASSMIPPYPGSNARARDRVEALQAYYHQQQP--PNST 304
R Y HP+ H S N +S I Y GS+ + R E AY HQ+Q N
Sbjct: 234 RGLPYAHPFLFSHRS-----NQRSSPAINSYQGSSTQMR---EQHHAYNHQRQQHHANGP 285
Query: 305 TVRPPVASSARRSSGHSRSAPLASLSSPPDQSGSYIYLPGRNFQEETRLPSHFHAWERDH 364
T+ P+ S RR P PDQ+ + PG + + ET HAWERD
Sbjct: 286 TLASPLISMTRRGLPPPPPPP-----PMPDQNVGFFIYPGGHHEPET---DQIHAWERDW 337
Query: 365 LP 366
P
Sbjct: 338 FP 339
>At2g15260 hypothetical protein
Length = 362
Score = 89.0 bits (219), Expect = 4e-18
Identities = 46/103 (44%), Positives = 62/103 (59%), Gaps = 7/103 (6%)
Query: 23 CSICLEIVSDNGD--RSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKIEKGQWLYANG 80
CSIC + + D R+ L+C H+FHLDCIGSA+NAKG M+CPNCR IE G W +++G
Sbjct: 123 CSICRGALVNENDVQRTLVTLKCVHKFHLDCIGSAYNAKGFMECPNCRNIEPGHWQFSDG 182
Query: 81 SRSYPE---FNMEDWTRDDDVYDLSYSEMSLGVHWCPFGNFAQ 120
+ P N E+ D+D S+S+M + CPFG Q
Sbjct: 183 THFNPNGMIANNEEEEEDND--PGSFSQMIVKSEVCPFGCLGQ 223
>At4g13490 putative protein
Length = 226
Score = 82.4 bits (202), Expect = 4e-16
Identities = 33/61 (54%), Positives = 47/61 (76%), Gaps = 1/61 (1%)
Query: 19 DSVPCSICLE-IVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKIEKGQWLY 77
D C++CLE + +D +R+ KL+C H+FHLDC+GS+FN K M+CP CR+IEKG+WL+
Sbjct: 18 DDDDCAVCLEPLANDADERTVVKLRCSHKFHLDCVGSSFNIKNKMECPCCRQIEKGKWLF 77
Query: 78 A 78
A
Sbjct: 78 A 78
>At2g38970 putative retroelement pol polyprotein
Length = 692
Score = 43.5 bits (101), Expect = 2e-04
Identities = 22/53 (41%), Positives = 26/53 (48%), Gaps = 3/53 (5%)
Query: 17 SSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAK-GAMQCPNCR 68
S S CSICL + + G + +C H FH CI S N K G CP CR
Sbjct: 66 SKSSKTCSICLNKMKEGGGHALFTAECSHSFHFHCIAS--NVKHGNQVCPVCR 116
>At2g17450 pseudogene
Length = 185
Score = 42.4 bits (98), Expect = 5e-04
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 16 KSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKI 70
+ DS C+ICL +D + L CGH FH++CI ++ + CP+CR+I
Sbjct: 95 EEGDSTECAICLTDFADGEEIRVLPL-CGHSFHVECIDKWLVSRSS--CPSCRRI 146
>At5g03450 unknown protein
Length = 630
Score = 42.0 bits (97), Expect = 6e-04
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Query: 18 SDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAF-NAKGAMQCPNCRKI 70
++ + CSIC+E+ + G L CGH + CI F + +CP C KI
Sbjct: 115 TEGLSCSICMEVWTSGGQHQVCCLPCGHLYGYSCINKWFQQRRSGGKCPLCNKI 168
>At4g18110 hypothetical protein
Length = 213
Score = 41.6 bits (96), Expect = 8e-04
Identities = 21/47 (44%), Positives = 25/47 (52%), Gaps = 3/47 (6%)
Query: 23 CSICLEIVSDNG-DRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
C ICLE ++ +G +R KL C H FH DCI K CP CR
Sbjct: 155 CIICLEELASSGSERRIMKLLCSHSFHKDCILPWLRCK--RSCPTCR 199
>At5g41430 unknown protein
Length = 161
Score = 40.8 bits (94), Expect = 0.001
Identities = 22/54 (40%), Positives = 27/54 (49%), Gaps = 3/54 (5%)
Query: 15 RKSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
++ D + CSICLE + D G +C H FH CI S K CPNCR
Sbjct: 109 KEGFDEIGCSICLEELED-GHEIIRIKKCRHVFHRSCIDSWL--KQNRSCPNCR 159
>At3g62690 RING-H2 zinc finger protein ATL5
Length = 257
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/47 (44%), Positives = 28/47 (58%), Gaps = 5/47 (10%)
Query: 23 CSICL-EIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
CS+CL E D+ R K CGH FH+DCI + F ++ + CP CR
Sbjct: 113 CSVCLSEFEEDDEGRVLPK--CGHVFHVDCIDTWFRSRSS--CPLCR 155
>At1g72310 RING-H2 zinc finger protein (ATL3)
Length = 324
Score = 40.8 bits (94), Expect = 0.001
Identities = 23/62 (37%), Positives = 31/62 (49%), Gaps = 5/62 (8%)
Query: 13 RHRKSSDSVPCSICL-EIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKIE 71
R D + CSICL E+V GD++ +C H FH++CI F + CP CR
Sbjct: 117 RQDSCKDGLECSICLSELVK--GDKARLLPKCNHSFHVECIDMWFQSHST--CPICRNTV 172
Query: 72 KG 73
G
Sbjct: 173 LG 174
>At1g53820 hypothetical protein
Length = 310
Score = 40.8 bits (94), Expect = 0.001
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 19 DSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
D + C++CL + D GD++ +C H FH+DCI F + CP CR
Sbjct: 116 DGLECAVCLSDLVD-GDKARVLPRCNHGFHVDCIDMWFQSHST--CPLCR 162
>At3g54780 unknown protein
Length = 676
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 12 TRHRKSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAK-GAMQCPNCR 68
+R S CSICL + + + +C H FH CI S N K G CP CR
Sbjct: 64 SRSSSKSSKQTCSICLNKMKEGCGHAIFTAECSHMFHFHCIAS--NVKHGNQVCPVCR 119
>At2g47560 unknown protein (At2g47560)
Length = 227
Score = 39.7 bits (91), Expect = 0.003
Identities = 20/47 (42%), Positives = 27/47 (56%), Gaps = 5/47 (10%)
Query: 23 CSICL-EIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
CS+CL E ++ R K CGH FH+DCI + F ++ CP CR
Sbjct: 108 CSVCLSEFEEEDEGRLLPK--CGHSFHVDCIDTWFRSRST--CPLCR 150
>At1g51930 hypothetical protein
Length = 132
Score = 39.7 bits (91), Expect = 0.003
Identities = 22/48 (45%), Positives = 26/48 (53%), Gaps = 5/48 (10%)
Query: 23 CSICLEIVSDNGDRSFAKLQ-CGHQFHLDCIGSAFNAKGAMQCPNCRK 69
C ICLE D D +L+ CGH FHL CI S K CP+CR+
Sbjct: 80 CPICLEEYED--DHQIRRLRNCGHVFHLLCIDSWLTQK--QNCPSCRR 123
>At5g42940 unknown protein
Length = 691
Score = 39.3 bits (90), Expect = 0.004
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Query: 15 RKSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
+ D+ PC +C E ++ D L+CGH+FH CI K CP C+
Sbjct: 629 KSPQDAEPCCVCQEEYTEGED--MGTLECGHEFHSQCIKEWLKQKNL--CPICK 678
>At4g26400 unknown protein
Length = 356
Score = 39.3 bits (90), Expect = 0.004
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 16 KSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR-KIEKGQ 74
K S+S+ CSICL+ D G + ++ C H+FH+ CI + CP CR ++
Sbjct: 234 KISESLQCSICLDDF-DKGSEA-KEMPCKHKFHIRCIVPWLELHSS--CPVCRYELPPDD 289
Query: 75 WLYANGSRSYP---EFNMEDWTRDDDVYDLSYSEMSLGVHWCPFGNFAQLPSS 124
N R E N+ + +DD + + SE W G F+ SS
Sbjct: 290 ETKVNPVRPRTRTLEINVSNENVEDDARNSNVSERRFSFPWPFSGLFSSSSSS 342
>At4g12190 putative protein
Length = 194
Score = 39.3 bits (90), Expect = 0.004
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 19 DSVPCSICLE-IVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
++ PCSICLE +VS R ++ C H FH C+ K CP CR
Sbjct: 141 ETEPCSICLESLVSGPKPRDITRMTCSHVFHNGCLLEWLKRKNT--CPLCR 189
>At1g53190 RING finger like protein
Length = 494
Score = 39.3 bits (90), Expect = 0.004
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 4/53 (7%)
Query: 16 KSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
K ++ PC+IC E S + A L CGH++H +C+ K CP C+
Sbjct: 435 KDLETEPCTICQE--SFKNEEKIATLDCGHEYHAECLEKWLIVKNV--CPICK 483
>At4g05350 putative protein
Length = 206
Score = 38.9 bits (89), Expect = 0.005
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 19 DSVPCSICLE-IVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
++ PCSICLE +VS R ++ C H FH C+ K CP CR
Sbjct: 153 ETEPCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNT--CPLCR 201
>At1g76410 RING zinc finger like protein
Length = 185
Score = 38.9 bits (89), Expect = 0.005
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 21 VPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKI 70
V C+ICL + GD QCGH FH+ CI + + + CP+CR+I
Sbjct: 102 VECAICLTEFAA-GDELRVLPQCGHGFHVSCIDTWLGSHSS--CPSCRQI 148
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.314 0.128 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,540,644
Number of Sequences: 26719
Number of extensions: 495685
Number of successful extensions: 1794
Number of sequences better than 10.0: 262
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 299
length of query: 412
length of database: 11,318,596
effective HSP length: 102
effective length of query: 310
effective length of database: 8,593,258
effective search space: 2663909980
effective search space used: 2663909980
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Medicago: description of AC144541.4