BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144517.14 - phase: 0 /pseudo
(56 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33610 putative protein 32 0.046
At4g16980 unknown protein 32 0.046
At3g24410 hypothetical protein 32 0.079
At1g55990 hypothetical protein 29 0.39
At1g55540 unknown protein 28 0.87
At3g23450 hypothetical protein 28 1.1
At3g17050 unknown protein 28 1.1
At1g04800 unknown protein 28 1.1
At1g04660 unknown protein 27 1.5
At5g35070 putative protein 27 1.9
At4g02450 unknown protein 27 1.9
At2g36250 chloroplast division protein AtFtsZ2-1 (AtFtsZ2-1) 27 1.9
At5g40490 ribonucleoprotein -like 27 2.5
At2g28390 unknown protein 27 2.5
At1g05135 unknown protein 27 2.5
At5g49350 unknown protein 26 4.3
At4g30580 unknown protein 26 4.3
At3g22140 hypothetical protein 26 4.3
At3g22130 hypothetical protein 26 4.3
At1g31290 hypothetical protein 25 5.6
>At4g33610 putative protein
Length = 115
Score = 32.3 bits (72), Expect = 0.046
Identities = 23/54 (42%), Positives = 30/54 (54%), Gaps = 11/54 (20%)
Query: 1 MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
M+G++VG EG G V R+G+ GI VGR G + +G EG VG GG
Sbjct: 19 MDGRLVGREGMDGRLVG-------REGMDGILVGREG----IVVGNEGKVGIGG 61
>At4g16980 unknown protein
Length = 102
Score = 32.3 bits (72), Expect = 0.046
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLR--DGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
G V G+ G G E GG + G++G+ G +G GG V +GI I G G
Sbjct: 27 GLVDGVIGIIGGEAMGIGGGAIGIGGGVMGMGGGVIGIGGGVIIGIGDITGGG 79
Score = 26.2 bits (56), Expect = 3.3
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 13 GSEVTAG--NGGMLRDGIVGIFVGR-LG-SGGIVSLGIEGIVGNGG 54
G E +G NG L DG++GI G +G GG + +G G++G GG
Sbjct: 15 GGEGISGTVNGLGLVDGVIGIIGGEAMGIGGGAIGIG-GGVMGMGG 59
>At3g24410 hypothetical protein
Length = 240
Score = 31.6 bits (70), Expect = 0.079
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 17/66 (25%)
Query: 3 GKVVGIEGRFGS----EVTAGNGGMLRDGIVGIF---------VGRLGSGGIVSLGIEGI 49
G VG+EG G E AG GG +G+ G G LG GG G EG+
Sbjct: 81 GGGVGVEGGGGDLGGVEGVAGEGGGGEEGLKGEDGGGEGVKGGEGMLGDGG----GGEGV 136
Query: 50 VGNGGR 55
VG+GGR
Sbjct: 137 VGDGGR 142
Score = 29.6 bits (65), Expect = 0.30
Identities = 23/54 (42%), Positives = 27/54 (49%), Gaps = 9/54 (16%)
Query: 5 VVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGI---EGIVGNGGR 55
VVG GR G V G G M G G G G+V G+ EG+VG+GGR
Sbjct: 136 VVGDGGR-GDGVKGGEGVMAGGG-----EGVKGGEGVVGEGVKGGEGVVGDGGR 183
Score = 26.9 bits (58), Expect = 1.9
Identities = 21/51 (41%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
Query: 5 VVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGR 55
VVG GR G V G G + GI G VG G G + G G GGR
Sbjct: 177 VVGDGGR-GEGVKGGGGEGVEGGIGGTVVGGGGGGRAGGRAVGG--GGGGR 224
Score = 25.4 bits (54), Expect = 5.6
Identities = 21/61 (34%), Positives = 27/61 (43%), Gaps = 9/61 (14%)
Query: 3 GKVVGIEGRFGSEVTAGNGGM---LRDGIVGIFVGRLGSGGIVSL------GIEGIVGNG 53
G V G+ G E AG GG+ R G VG+ G GG+ + G EG+ G
Sbjct: 55 GVVDGVLGDLPPEGLAGGGGLRLPTRGGGVGVEGGGGDLGGVEGVAGEGGGGEEGLKGED 114
Query: 54 G 54
G
Sbjct: 115 G 115
Score = 25.0 bits (53), Expect = 7.4
Identities = 17/42 (40%), Positives = 19/42 (44%)
Query: 13 GSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G E G GML DG G V G G G EG++ GG
Sbjct: 116 GGEGVKGGEGMLGDGGGGEGVVGDGGRGDGVKGGEGVMAGGG 157
>At1g55990 hypothetical protein
Length = 109
Score = 29.3 bits (64), Expect = 0.39
Identities = 25/72 (34%), Positives = 34/72 (46%), Gaps = 20/72 (27%)
Query: 1 MEGKVVGIEGRFG-----SEVTAGNGGMLRDGIVGIFVGRLGSG-------GIVSLGIEG 48
M+G++VG EG G + GN G + GI VGR G G G +++GI G
Sbjct: 29 MDGRLVGREGMDGRLVGREGIVVGNEGKV--GIAVGMVGRFGCGKADGIGNGDIAVGIVG 86
Query: 49 ------IVGNGG 54
+ GNGG
Sbjct: 87 KDGCGNVDGNGG 98
>At1g55540 unknown protein
Length = 1821
Score = 28.1 bits (61), Expect = 0.87
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 17 TAGNGGMLRDGIVGIFVGRLGSGGIVSLG--IEGIVGNGG 54
T G GG G G F G G GG G +G G GG
Sbjct: 1759 TGGFGGFAPQGSSGGFAGAAGGGGFGGFGGQAQGQAGGGG 1798
>At3g23450 hypothetical protein
Length = 452
Score = 27.7 bits (60), Expect = 1.1
Identities = 21/52 (40%), Positives = 26/52 (49%), Gaps = 8/52 (15%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
GK G+ G FG G GG+ + G VG G G GG G+ G +G GG
Sbjct: 205 GKGGGVGGGFGKGGGVG-GGIGKGGGVG---GGFGKGG----GVGGGIGKGG 248
Score = 27.3 bits (59), Expect = 1.5
Identities = 20/50 (40%), Positives = 20/50 (40%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
G G G V G GG G G F G G GG G G G GG F
Sbjct: 51 GFGGGAGGGVGGGAGGGFGGGAGGGFGGGGGGGGGGGGGGGGGFGGGGGF 100
Score = 25.8 bits (55), Expect = 4.3
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 10 GRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G FG G GG + G G G G GG GI G +G GG
Sbjct: 98 GGFGGGHGGGVGGGVGGGHGGGVGGGFGKGG----GIGGGIGKGG 138
>At3g17050 unknown protein
Length = 349
Score = 27.7 bits (60), Expect = 1.1
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
G G G G+GG L GI G G G GG + G G +G G
Sbjct: 124 GHGGGIGGGAGGGSGGGLGGGIGGGAGGGAGGGGGLGGGHGGGIGGG 170
Score = 25.0 bits (53), Expect = 7.4
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
G G FG G+GG G+ G F G GSGG G G G G
Sbjct: 290 GAGGGFGGGAGGGHGG----GVGGGFGG--GSGGGFGGGAGGGAGGG 330
Score = 25.0 bits (53), Expect = 7.4
Identities = 19/50 (38%), Positives = 21/50 (42%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
G G G G+GG L GI G G G GG G G+GG F
Sbjct: 182 GHGGGIGGGAGGGSGGGLGGGIGGGAGGGAGGGGGAGGGGGLGGGHGGGF 231
>At1g04800 unknown protein
Length = 200
Score = 27.7 bits (60), Expect = 1.1
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSG--GIVSLGIEGIVGNG 53
G++G FG V G G + G F G +G G G G +G VG G
Sbjct: 102 GVDGGFGKGVDGGAGKGVDGGAGKGFDGGVGKGVDGGAGKGFDGGVGKG 150
>At1g04660 unknown protein
Length = 212
Score = 27.3 bits (59), Expect = 1.5
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSL-GIEGIVGNGG 54
G V G+ G G + G GG+ + G +G G G GG S+ G+ G+ G GG
Sbjct: 76 GGVAGVGG-LGMPLIGGLGGIGKYGGIG---GAAGIGGFHSIGGVGGLGGVGG 124
Score = 25.4 bits (54), Expect = 5.6
Identities = 22/54 (40%), Positives = 25/54 (45%), Gaps = 2/54 (3%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLG--SGGIVSLGIEGIVGNGG 54
GK GI G G GG+ G VG VG LG GG+ LG G +G G
Sbjct: 96 GKYGGIGGAAGIGGFHSIGGVGGLGGVGGGVGGLGGVGGGVGGLGGVGGLGGAG 149
>At5g35070 putative protein
Length = 356
Score = 26.9 bits (58), Expect = 1.9
Identities = 15/43 (34%), Positives = 16/43 (36%)
Query: 12 FGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
FG VT G G G GG+V GIVG G
Sbjct: 303 FGRAVTRVTSGAAIGAAAGTATGAAAGGGVVGRAGGGIVGRAG 345
>At4g02450 unknown protein
Length = 241
Score = 26.9 bits (58), Expect = 1.9
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G + G+EG S++ G GGM G +G G G GG+ +G G+ G GG
Sbjct: 148 GGMGGMEGMDFSKLMGGMGGM---GGMGGLEGLGGMGGMGGMG--GMGGMGG 194
>At2g36250 chloroplast division protein AtFtsZ2-1 (AtFtsZ2-1)
Length = 478
Score = 26.9 bits (58), Expect = 1.9
Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Query: 2 EGKVVGIEGRFGSE---VTAGNGGMLRDGIVGIFVGRLGSGGIVSLGI 46
E K V E +GS+ VTAG GG G + G + GI+++GI
Sbjct: 193 ESKEVIEEALYGSDMVFVTAGMGGGTGTGAAPVIAGIAKAMGILTVGI 240
>At5g40490 ribonucleoprotein -like
Length = 423
Score = 26.6 bits (57), Expect = 2.5
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
GI G G AG GG G G +G +G GG G G GG F
Sbjct: 353 GIGGYGGGMGGAGGGGYRGGG--GYDMGGVGGGGAGGYGAGGGGNGGGSF 400
>At2g28390 unknown protein
Length = 173
Score = 26.6 bits (57), Expect = 2.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 13 GSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIV 50
G+E NGG+LR+G+ G SGG V L E V
Sbjct: 72 GNEGGVSNGGLLREGVAGT------SGGEVLLRAENPV 103
>At1g05135 unknown protein
Length = 384
Score = 26.6 bits (57), Expect = 2.5
Identities = 20/50 (40%), Positives = 23/50 (46%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
GI G G G GG + G G G G+GG GI G G+GG F
Sbjct: 69 GIGGGGGQGGGFGAGGGVGGGAGGGLGGGGGAGGGGGGGIGGGSGHGGGF 118
Score = 26.2 bits (56), Expect = 3.3
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
GI G G G GG + G G G G+GG G+ G G+GG F
Sbjct: 107 GIGGGSGHGGGFGAGGGVGGGAGGGIGGGGGAGGGGGGGVGGGSGHGGGF 156
Score = 25.8 bits (55), Expect = 4.3
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
G G G G GG + G+ G G G GG G+ G G+GG F
Sbjct: 260 GANGGSGHGSGFGAGGGVGGGVGGGAGGGGGGGGGGGGGVGGGSGHGGGF 309
Score = 25.4 bits (54), Expect = 5.6
Identities = 19/48 (39%), Positives = 20/48 (41%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G G AG GG G G G+GG V G GI G GG
Sbjct: 127 GAGGGIGGGGGAGGGGGGGVGGGSGHGGGFGAGGGVGGGAGGIGGGGG 174
Score = 24.6 bits (52), Expect = 9.6
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGR---LGSGGIVSLGIEGIVGNGG 54
G V G G G AG GG G VG G G+GG + G G VG GG
Sbjct: 160 GGVGGGAGGIGGGGGAGGGG---GGGVGGGSGHGSGFGAGGGIGGGAGGGVGGGG 211
>At5g49350 unknown protein
Length = 302
Score = 25.8 bits (55), Expect = 4.3
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 2 EGKVVGIEGR-FGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGI-VGNGG 54
EG +G G FG T GG G G+ G G GG LG G VG GG
Sbjct: 41 EGGGIGGGGTGFGGGGTGVGGGGTGFGGGGLGAGGSGGGGAGGLGSGGTGVGGGG 95
Score = 25.0 bits (53), Expect = 7.4
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G G G GG+ G G G LGSGG +G G +G GG
Sbjct: 55 GGTGVGGGGTGFGGGGLGAGGSGGGGAGGLGSGG-TGVGGGGGLGAGG 101
>At4g30580 unknown protein
Length = 356
Score = 25.8 bits (55), Expect = 4.3
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 9 EGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
+GR GS + G+ + + +G+G I+ G EGI+ +G
Sbjct: 280 DGRLGSFKKGAFTVAAKTGVAVVPITLMGTGKIMPTGSEGILNHG 324
>At3g22140 hypothetical protein
Length = 1237
Score = 25.8 bits (55), Expect = 4.3
Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 5/47 (10%)
Query: 13 GSEVTAG--NGGMLRDGI--VGIFVGRLGSGGIVSLGIE-GIVGNGG 54
G T G NGG+ G VG+ +G + +GG+ + G E G V GG
Sbjct: 873 GGFATGGIANGGVATGGFTGVGVVIGGVAAGGVATGGFEIGGVEIGG 919
>At3g22130 hypothetical protein
Length = 166
Score = 25.8 bits (55), Expect = 4.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
VG+ G V G G+ G+ G +G GG+ + G+ VG G
Sbjct: 5 VGVGGVMTGGVGVGGVTTGGVGVGGVMTGGVGVGGVTTGGVGVGVGGG 52
>At1g31290 hypothetical protein
Length = 1194
Score = 25.4 bits (54), Expect = 5.6
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIF------VGRLGSGGIVSLGIEGIVGNGGR 55
VG GR G G GG+ G VG+ VG +G GG+ +G +G VG+ GR
Sbjct: 172 VGDVGRDGVG-DVGQGGVGDVGQVGVGDVGQGGVGDVGQGGVGDVGRDG-VGDVGR 225
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.152 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,410,621
Number of Sequences: 26719
Number of extensions: 56141
Number of successful extensions: 198
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 77
length of query: 56
length of database: 11,318,596
effective HSP length: 32
effective length of query: 24
effective length of database: 10,463,588
effective search space: 251126112
effective search space used: 251126112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC144517.14