BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144516.7 - phase: 0
(261 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32400 unknown protein 354 3e-98
At4g28770 unknown protein 115 3e-26
At2g20230 unknown protein 112 3e-25
At2g20740 hypothetical protein 59 2e-09
At2g34580 hypothetical protein 33 0.15
At1g52020 30 1.3
At2g42320 unknown protein 28 6.5
At5g28820 putative protein 27 8.5
At5g06110 cell division related protein-like 27 8.5
At1g49350 unknown protein 27 8.5
>At1g32400 unknown protein
Length = 280
Score = 354 bits (908), Expect = 3e-98
Identities = 176/288 (61%), Positives = 211/288 (73%), Gaps = 36/288 (12%)
Query: 2 VCCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDS 61
+ CRG ECLLKLLNF+L V GL ++GYGIYL V + + +D+ S T D++ +GD
Sbjct: 1 MACRGCLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDN-----SVTFDLT--NGDQ 53
Query: 62 ALIQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCI------------ 109
+ + FGRP+LMAVSLS NIFD LPKAWFIYLFIG+G LFV+SC GC+
Sbjct: 54 SYVSFGRPILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSC 113
Query: 110 ----------------AFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVI 153
AF+FFD SW++E+P+D+TG+FD IY FLRENW IVRWVALG V+
Sbjct: 114 YSLLLILLILVELGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVV 173
Query: 154 FEALLFLLALIVRAVNRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRP 213
FEALLFLLAL+VRA N PA+YDSDDE + PRQQ+RQP + NRQA P +G+PVA T DQRP
Sbjct: 174 FEALLFLLALMVRAANTPAEYDSDDEYLAPRQQIRQPFI-NRQAAPVTGVPVAPTLDQRP 232
Query: 214 NRNDAWSTRMREKYGLDTSEFTYNPSESQRFQQANSQPTEEKSRCTIM 261
+R+D WS RMREKYGLDTSEFTYNPSES RFQQ +QP EEK RCTIM
Sbjct: 233 SRSDPWSARMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEKGRCTIM 280
>At4g28770 unknown protein
Length = 281
Score = 115 bits (287), Expect = 3e-26
Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 69/291 (23%)
Query: 3 CCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSA 62
CC + +LK+LNF+ G++I+ Y I++L + D P P SP S S
Sbjct: 5 CCHVSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDSSYS- 63
Query: 63 LIQFGRPMLMAVSLSDNIFDK------------------------LPKAWFIYLFIGVGA 98
F ++ S+SD++ + LP WFIY F+ +G
Sbjct: 64 ---FSNSIIEINSVSDSLKNPIDFVSGIVLGSGGGDSGFNLRSLDLPAPWFIYCFMAIGI 120
Query: 99 VLFVVSCFGCIA----------------------------FLFFDKSWKEEIPTDKTGDF 130
++ +V+ G IA F+ D+ W++++P D TG+
Sbjct: 121 LVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEKDLPYDPTGEL 180
Query: 131 DMIYGFLRENWDIVRWVALGIVIFEALLFLLALIVRAVNRP--ADYDSDDELINPRQQVR 188
+ + F+ EN DI +WV + +V + L LLAL++RA+ P ++ D +D+ NP + R
Sbjct: 181 NSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDDEDDFENPMSRAR 240
Query: 189 QPLLNNRQAGPPSGLPVAGTTDQRPNRNDAWSTRMREKYGLDTSEFTYNPS 239
LL P A T + D W +R+REKYGL S+ ++ PS
Sbjct: 241 DNLLG----------PQANQTSSGSSNIDNWRSRIREKYGLINSQ-SHTPS 280
>At2g20230 unknown protein
Length = 270
Score = 112 bits (279), Expect = 3e-25
Identities = 81/276 (29%), Positives = 128/276 (46%), Gaps = 63/276 (22%)
Query: 3 CCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSA 62
CC + LK+LNF+ G++I+ Y I++L +++ D P P S SG
Sbjct: 5 CCHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPP-----PSASSSSGTEI 59
Query: 63 LIQFGRPM------LMAVSLSDNIFDK--------LPKAWFIYLFIGVGAVLFVVSCFGC 108
P+ + ++ L N D LP WFIY F+ VG ++ +V+ G
Sbjct: 60 ATSVSEPLKNPIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGF 119
Query: 109 IA----------------------------FLFFDKSWKEEIPTDKTGDFDMIYGFLREN 140
IA ++ D+ W++++P D TG+ + F+ EN
Sbjct: 120 IAAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEEN 179
Query: 141 WDIVRWVALGIVIFEALLFLLALIVRA-VNRP---ADYDSDDELINPRQQVRQPLLNNRQ 196
DI +WV + +V + L LLA+++RA V+ P D + DDE NPR + PLL
Sbjct: 180 IDICKWVGIAVVAVQLLSLLLAMVLRAMVSTPKPELDEEEDDE--NPRSRTWDPLL---- 233
Query: 197 AGPPSGLPVAGTTDQRPNRNDAWSTRMREKYGLDTS 232
GP AG+ ++ + WS+R+REKYGL+ S
Sbjct: 234 -GPQGNQAPAGS-----SKIENWSSRIREKYGLNQS 263
>At2g20740 hypothetical protein
Length = 123
Score = 59.3 bits (142), Expect = 2e-09
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 107 GCIAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIFEALLFLLALIVR 166
G +A +F ++ WK++ P D +G F F+ N+ I +W+ L IV + L L+A++++
Sbjct: 5 GVVADIFLNRDWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLK 64
Query: 167 AV--NRPADYDSDDE----LINPRQQVRQP 190
A+ + YDSDDE + Q RQP
Sbjct: 65 ALGPHPHRHYDSDDEYNVSTVALLQDARQP 94
>At2g34580 hypothetical protein
Length = 312
Score = 33.1 bits (74), Expect = 0.15
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 143 IVRWVALGIVIFEALLFLLALIVRAVNRPADYDSDDELINPRQQVRQPLLNNRQAGPPSG 202
I+ W+ + + L I R++N DYD DD+ ++ VR PL+ N PP
Sbjct: 15 ILGWITIELACKPCLESGREAIDRSLN--PDYDPDDQDVDSSSDVRAPLIPNH---PPDN 69
Query: 203 LPVAGTTDQRPNRNDAWSTRM----REKYGLDTSEFTYN 237
TT + +++ S M K LD EFT N
Sbjct: 70 SDPDPTTAIKVENSNSLSLAMALSSAFKERLDQMEFTRN 108
>At1g52020
Length = 1330
Score = 30.0 bits (66), Expect = 1.3
Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 2/46 (4%)
Query: 129 DFDMIYGFLRENWDIVRWVALGIVIFEALLFLLALIVRAVNRPADY 174
D D++Y + NW WVALGI + E L+ + ++ P +Y
Sbjct: 1049 DVDVVYAPM--NWKSEHWVALGINLNERLITVYDALISHTLEPFEY 1092
>At2g42320 unknown protein
Length = 669
Score = 27.7 bits (60), Expect = 6.5
Identities = 18/79 (22%), Positives = 35/79 (43%), Gaps = 7/79 (8%)
Query: 183 PRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPNRNDAWSTRMREKYGLDTSEFTYNPSESQ 242
P V P+L+++ P+G G+ Q N WS + E +G+ N +S
Sbjct: 443 PTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNAIGNWSRCLTEMFGM-------NSDDSS 495
Query: 243 RFQQANSQPTEEKSRCTIM 261
++ NS+ +S+ ++
Sbjct: 496 AKEKRNSEDDHVESKAFVL 514
>At5g28820 putative protein
Length = 172
Score = 27.3 bits (59), Expect = 8.5
Identities = 23/88 (26%), Positives = 37/88 (41%), Gaps = 7/88 (7%)
Query: 8 WECLLKLLNFIL---TVTGLAIVGYGIYLLVAFAKASDDDKP-DISPTPDISPVSGDS-- 61
W+ LK L I TG +VG G ++V ++ DDD P D+S + + G
Sbjct: 37 WDDYLKDLRMIFGLNVATGQNVVGLGDSIVVDASQVGDDDGPHDLSHVQILDDMGGSHDV 96
Query: 62 -ALIQFGRPMLMAVSLSDNIFDKLPKAW 88
+ ++ R M + + DK W
Sbjct: 97 FSSLEKRRAESMQEAEEKEVEDKANNVW 124
>At5g06110 cell division related protein-like
Length = 663
Score = 27.3 bits (59), Expect = 8.5
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 10/139 (7%)
Query: 115 DKSW-KEEIPTDKTGDFDMIYGFLRENWDIV-RWVALGIVIFEALLFLLALIVRAVNRPA 172
+K W KEEI + G G + W+++ ++ G + E L ++++ +
Sbjct: 474 EKPWSKEEIDMLRKGTTKFPKG-TSQRWEVISEYIGTGRSVEEILKATKTVLLQKPDSAK 532
Query: 173 DYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPNRNDAWSTRMREKYGLDTS 232
+DS E P + PL + G P +P D N++ T E+ G T
Sbjct: 533 AFDSFLENRKPAASINSPLSTREELGEPI-IPTKAHED-----NNSTKTETAEQNG-KTK 585
Query: 233 EFTYNPSESQRFQQANSQP 251
E + S+ + S P
Sbjct: 586 ENNNSNGNSEPAAASGSDP 604
>At1g49350 unknown protein
Length = 378
Score = 27.3 bits (59), Expect = 8.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 35 VAFAKASDDDKPDISPTPDISPVSGDSALIQFGRPMLM 72
+A AKA+ + ++ P + +SGD+ L+ G MLM
Sbjct: 335 IASAKAAVESDDNVPPEFKLDLISGDAELVYNGAKMLM 372
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,455,076
Number of Sequences: 26719
Number of extensions: 286877
Number of successful extensions: 882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 11
length of query: 261
length of database: 11,318,596
effective HSP length: 97
effective length of query: 164
effective length of database: 8,726,853
effective search space: 1431203892
effective search space used: 1431203892
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Medicago: description of AC144516.7