BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144515.9 + phase: 0
(207 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10670 pseudogene 43 1e-04
At2g06160 putative Athila retroelement ORF1 protein 40 0.001
At1g20390 hypothetical protein 39 0.001
At4g08050 39 0.003
At4g03770 hypothetical protein 38 0.003
At3g32890 Athila ORF 1, putative 38 0.004
At1g38440 hypothetical protein 38 0.004
At4g07640 putative athila transposon protein 37 0.010
At2g07480 F9A16.15 35 0.021
At1g37180 hypothetical protein 35 0.021
At3g31520 hypothetical protein 34 0.062
At3g30655 hypothetical protein, 3' partial 34 0.062
At2g43150 putative extensin 34 0.062
At4g07360 33 0.11
At2g06310 putative Athila retroelement ORF1 protein 33 0.14
At1g41690 hypothetical protein 33 0.14
At4g04110 putative RPP1-like disease resistance protein 32 0.18
At3g32000 unknown protein 32 0.18
At1g20970 hypothetical protein 32 0.18
At4g07620 putative athila transposon protein 32 0.31
>At2g10670 pseudogene
Length = 929
Score = 43.1 bits (100), Expect = 1e-04
Identities = 56/240 (23%), Positives = 90/240 (37%), Gaps = 60/240 (25%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAA 66
W +L K+ + T+D+ AF + + N+R R + + K+ ESF E +R++G
Sbjct: 134 WEKTLPKNSITTWDDCKMAFLAKFFSNSRTARLRNEISGFTLKQNESFCEAWERFKGYQ- 192
Query: 67 RITPALDEEEMTQTFLKTLKKDYVE--RMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEK 124
T + L TL + + RM++ +N G L++ + +G + E
Sbjct: 193 --TKCPHHGFSQASLLNTLYRGVLPKIRMLLDTASN-------GNFLKKDIEEGWELVEN 243
Query: 125 -AESSVNASKRYGNG----------HHKK----------------------KETEVGMVS 151
A+S N ++ YG HH++ E E V
Sbjct: 244 LAQSGGNYNEDYGRSIYTSSNTDDKHHREMKALNDKLDKIIQMQQKHVHFISEDEPFQVQ 303
Query: 152 AGAGQSMATVA---------PINAAQMPPSYPYVPYSQHPFFPP------FYHQYPLPPG 196
G A + P AA P+ P+VPY+Q F P Y Q PPG
Sbjct: 304 EGENDQCAEIRYVHNQGPSLPSAAAAAEPTKPFVPYNQSLGFVPKQQFQGGYQQQQPPPG 363
>At2g06160 putative Athila retroelement ORF1 protein
Length = 750
Score = 39.7 bits (91), Expect = 0.001
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAA 66
W +L ++ + T+D+ AF + + N+R R + +QK+ ESF E +R++G
Sbjct: 102 WEKTLPQNSITTWDDCKKAFFAKFFSNSRTARLRNEISGFTQKQNESFCEAWERFKGYQT 161
Query: 67 RIT-PALDEEEMTQTFLKTLKKDYVERMIIAAPNNF-SEMVTMGTRLEE--AVRDGIIVF 122
+ P + + T + + + A+ NF ++ V G L E A DG
Sbjct: 162 KCPHPGFKQASLLSTLYRGVLPKLRMLLDTASNGNFLNKDVEKGWELVENLAQSDG-NYN 220
Query: 123 EKAESSVNASKRYGNGHHKK 142
E + S++ S + HH++
Sbjct: 221 ENYDKSISTSSESDDKHHRE 240
>At1g20390 hypothetical protein
Length = 1791
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/125 (20%), Positives = 54/125 (43%)
Query: 4 AAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
A W++ L + + +F +L ++F HY + + L S+SQ +ES R + R++
Sbjct: 220 AHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKL 279
Query: 64 AAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFE 123
IT + + + + + + AP+ + + +R E + +I+
Sbjct: 280 VVTNITVPDEAAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELEEEKLILAR 339
Query: 124 KAESS 128
K S+
Sbjct: 340 KHNST 344
>At4g08050
Length = 1428
Score = 38.5 bits (88), Expect = 0.003
Identities = 21/57 (36%), Positives = 30/57 (51%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
W +LS D + T+D+ AF S + N R R + SQK ESF E +R++G
Sbjct: 102 WEKNLSHDSITTWDDYKKAFLSKFFSNARTARLRNEIYGFSQKTGESFCEAWERFKG 158
>At4g03770 hypothetical protein
Length = 464
Score = 38.1 bits (87), Expect = 0.003
Identities = 27/94 (28%), Positives = 41/94 (42%), Gaps = 5/94 (5%)
Query: 4 AAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
A W+T L + V +F EL+ F Y + L SLSQ+ E R++ ++R
Sbjct: 282 ALNWFTRLKGNSVDSFQELSTLFLKQYSVLIDPSTSDADLWSLSQQPNEPLRDFLAKFRS 341
Query: 64 AAARITPALDEEEMTQTFLKTLKKDYVERMIIAA 97
A++ D L TLKK R ++A
Sbjct: 342 TLAKVEGIND-----LAALSTLKKALCLRARLSA 370
>At3g32890 Athila ORF 1, putative
Length = 755
Score = 37.7 bits (86), Expect = 0.004
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
W +L D + T+D+ AF S + N R R + SQK ESF E +R++G
Sbjct: 55 WEKNLPHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTRESFCEAWERFKG 111
>At1g38440 hypothetical protein
Length = 263
Score = 37.7 bits (86), Expect = 0.004
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
W +L D + T+D+ AF S + N R R + SQK ESF E +R++G
Sbjct: 55 WEKNLPHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTSESFCEAWERFKG 111
>At4g07640 putative athila transposon protein
Length = 866
Score = 36.6 bits (83), Expect = 0.010
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
W +L D + T+D+ AF S + N R R + SQK ESF E +R++G
Sbjct: 102 WEKNLPHDSIITWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGESFCEAWERFKG 158
>At2g07480 F9A16.15
Length = 1012
Score = 35.4 bits (80), Expect = 0.021
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAA 66
W +L + T+D+ AF + + N+R R + +QK ESF E +R++G
Sbjct: 97 WEKTLPVKSIDTWDDCKKAFLAKFFSNSRKARLRSEISGFNQKNSESFSEAWERFKGYTT 156
Query: 67 RITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEK-A 125
+ P + + L+ L K RM++ +N G L + V +G + E A
Sbjct: 157 Q-CPHHESLPPQYSILRCLPK---IRMLLDTASN-------GNILNKDVAEGWELVENLA 205
Query: 126 ESSVNASKRYGNGHHKKKETE 146
+S N ++ Y + ++E
Sbjct: 206 QSHRNYNEDYDRTNRGSSDSE 226
>At1g37180 hypothetical protein
Length = 661
Score = 35.4 bits (80), Expect = 0.021
Identities = 16/54 (29%), Positives = 26/54 (47%)
Query: 4 AAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREY 57
A W+T L + + F +L+ AF YG+ + L +LSQ ++ R Y
Sbjct: 362 ALTWFTQLEEGSIDNFKQLSTAFIKQYGYFIKSDITEAHLWNLSQSADDPLRTY 415
>At3g31520 hypothetical protein
Length = 528
Score = 33.9 bits (76), Expect = 0.062
Identities = 17/62 (27%), Positives = 30/62 (47%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAA 66
W++ L + + +F EL+ F Y L + L SLSQ+ E R++ + R A
Sbjct: 293 WFSRLEGNSMDSFQELSTLFLKQYSVLIDLGTSDADLWSLSQQPNEPLRDFLAKLRSTLA 352
Query: 67 RI 68
++
Sbjct: 353 KV 354
>At3g30655 hypothetical protein, 3' partial
Length = 660
Score = 33.9 bits (76), Expect = 0.062
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
W +L ++ + +D+ AF + + N+R R + +QK+ ESF E +R++G
Sbjct: 102 WEKTLPQNSITAWDDCKKAFLAKFFSNSRTARLRNEISGFTQKQNESFGEAWERFKG 158
>At2g43150 putative extensin
Length = 212
Score = 33.9 bits (76), Expect = 0.062
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 140 HKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYV----PYSQHPFFPPFYHQYPLPP 195
H K + V M++ G +MAT P + PP Y Y P P PP+ ++ P PP
Sbjct: 8 HAKAQWVVAMLALLVGSAMAT-EPYYYSSPPPPYEYKSPPPPVKSPP--PPYEYKSPPPP 64
Query: 196 GQNSLFPFYF 205
++ P+Y+
Sbjct: 65 VKSPPPPYYY 74
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 5/39 (12%)
Query: 170 PPSY---PYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y P P P PP+Y+ P PP ++ P+Y+
Sbjct: 118 PPYYYHSPPPPVKSPP--PPYYYHSPPPPVKSPPPPYYY 154
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 5/39 (12%)
Query: 170 PPSY---PYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y P P P PP+Y+ P PP ++ P+Y+
Sbjct: 102 PPYYYHSPPPPVKSPP--PPYYYHSPPPPVKSPPPPYYY 138
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 5/39 (12%)
Query: 170 PPSY---PYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y P P P PP+Y+ P PP ++ P+Y+
Sbjct: 134 PPYYYHSPPPPVKSPP--PPYYYHSPPPPVKSPPPPYYY 170
>At4g07360
Length = 675
Score = 33.1 bits (74), Expect = 0.11
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR---- 62
W +L D + T+D+ AF S + N R R + SQK ES E +R++
Sbjct: 44 WEKNLLHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGESLCEAWERFKDGNY 103
Query: 63 --GAAARITPALDEEEMTQTFLKTLKKDYVERMIIA 96
+ D ++ + +KTL D ++R++++
Sbjct: 104 NEDCDRTVKGTADSDDKHRKEIKTL-NDKLDRILLS 138
>At2g06310 putative Athila retroelement ORF1 protein
Length = 733
Score = 32.7 bits (73), Expect = 0.14
Identities = 26/94 (27%), Positives = 38/94 (39%), Gaps = 7/94 (7%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAA 66
W +L D + T+D+ AF S + N R R + QK ESF E +R++
Sbjct: 102 WEKNLPHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFLQKAGESFCEAWERFKDGNY 161
Query: 67 RITPALDEEEMTQTFLKTLKKDYVERMIIAAPNN 100
E+ +T T D R I A N+
Sbjct: 162 -------NEDCDRTVRSTADSDDKHRKEIKALND 188
>At1g41690 hypothetical protein
Length = 371
Score = 32.7 bits (73), Expect = 0.14
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 7 WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAA 66
W +L + + T+D+ AF + + +R R + +QK+ ESF E +R++G
Sbjct: 102 WEKTLPQGSITTWDDCKKAFLAKFFSYSRTARLRNEISGFTQKQSESFCEAWERFKGYQ- 160
Query: 67 RITPALDEEEMTQTFLKTLKKDYVE--RMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEK 124
T + L TL + + RM++ +N G L++ V +G + EK
Sbjct: 161 --TKCPHHGFKQASLLSTLYRGVLPKIRMLLDTASN-------GNFLKKDVEEGWELVEK 211
Query: 125 -AESSVNASKRY 135
A+S N ++ Y
Sbjct: 212 FAQSDGNYNEDY 223
>At4g04110 putative RPP1-like disease resistance protein
Length = 239
Score = 32.3 bits (72), Expect = 0.18
Identities = 24/86 (27%), Positives = 38/86 (43%), Gaps = 7/86 (8%)
Query: 47 SQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIA-APNNFSEMV 105
S+K S Q W + P+ E++ QTFL KD ++IIA N
Sbjct: 27 SKKSHSSLHYGLQFW---VLYVFPSFSVEDIRQTFLSHFLKDLDRKLIIAFKDNEIERSQ 83
Query: 106 TMGTRLEEAVRD---GIIVFEKAESS 128
++ L+ +RD I++F K +S
Sbjct: 84 SLNPDLKRPIRDSRIAIVIFSKNYAS 109
>At3g32000 unknown protein
Length = 839
Score = 32.3 bits (72), Expect = 0.18
Identities = 20/61 (32%), Positives = 29/61 (46%)
Query: 2 EDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRW 61
+ A W +L D + T D+ AF S + N R R + SQK ESF E +R+
Sbjct: 97 DKALIWEMNLPHDSITTRDDCKKAFLSKFFSNDRTARLRNEISGFSQKIGESFCEAWERF 156
Query: 62 R 62
+
Sbjct: 157 K 157
>At1g20970 hypothetical protein
Length = 1498
Score = 32.3 bits (72), Expect = 0.18
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 33 NTRLKPNRE--FLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKD 88
+T L N E F+R + Q K+ RE G + ALDE+E T+ LK L+K+
Sbjct: 922 HTTLSLNEEKGFMREIKQLKQ--LREQISSSMGTKDEVKQALDEKEKTEERLKVLRKE 977
>At4g07620 putative athila transposon protein
Length = 683
Score = 31.6 bits (70), Expect = 0.31
Identities = 41/196 (20%), Positives = 72/196 (35%), Gaps = 23/196 (11%)
Query: 14 DDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALD 73
D ++++D+ F + + N R R + +QK E+F + W + T
Sbjct: 88 DFINSWDDCKKVFLAKFFSNVRTARLRNEISGFNQKNNETF---CEAWERFKSYTTQCPH 144
Query: 74 EEEMTQTFLKTLKKDYVE--RMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS--- 128
+ L TL + + RM++ P+N G L + V +G + E S
Sbjct: 145 HGFKKASLLSTLYRGALPKIRMLLDTPSN-------GNFLNKDVEEGWELVENLAQSDGC 197
Query: 129 ----VNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQ---- 180
+ S R G K+ ++ ++ + + Q S P+V Y+Q
Sbjct: 198 YNEDYDRSVRGTGGSEDKQSKDIKALNEKSTNVANPQDKVYPPQQNQSKPFVQYNQGYVP 257
Query: 181 HPFFPPFYHQYPLPPG 196
F Y Q PPG
Sbjct: 258 KQQFNGGYQQQNSPPG 273
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.317 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,754,300
Number of Sequences: 26719
Number of extensions: 195009
Number of successful extensions: 904
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 115
length of query: 207
length of database: 11,318,596
effective HSP length: 95
effective length of query: 112
effective length of database: 8,780,291
effective search space: 983392592
effective search space used: 983392592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144515.9