BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144515.17 - phase: 0 /pseudo
         (58 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g56510 hypothetical protein                                         26  3.3
At1g47870 E2F transcription factor like protein                        25  7.3

>At1g56510 hypothetical protein
          Length = 1007

 Score = 26.2 bits (56), Expect = 3.3
 Identities = 14/37 (37%), Positives = 23/37 (61%), Gaps = 3/37 (8%)

Query: 9   LNVRPILSNLGEVDLVHRNHTRPRR---YQLLQIMCV 42
           LNVR  L NL    L+H +H + +R   ++LL++M +
Sbjct: 457 LNVRLGLKNLANRYLIHIDHDQKKRVVVHRLLRVMAI 493


>At1g47870 E2F transcription factor like protein
          Length = 396

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 16 SNLGEVDLVHRNHTRPRRYQLLQIMCVLDP 45
          SN GE   +  +H  P R++LLQ +   DP
Sbjct: 5  SNSGEDPTLSYHHRSPFRFELLQSISSSDP 34


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.334    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,269,327
Number of Sequences: 26719
Number of extensions: 36568
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 2
length of query: 58
length of database: 11,318,596
effective HSP length: 34
effective length of query: 24
effective length of database: 10,410,150
effective search space: 249843600
effective search space used: 249843600
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.6 bits)