BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144513.4 - phase: 0 /pseudo
         (1015 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g27970 unknown protein                                              30  5.3
At1g28220 purine permease, putative                                    30  9.1

>At4g27970 unknown protein
          Length = 519

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 28/94 (29%), Positives = 42/94 (43%), Gaps = 10/94 (10%)

Query: 645 VTFMVSKLLLMPPALLTFFMQMAIFSFVRLTLMRPLLYPTFF--LNTKLFLARKL----- 697
           V + +S LLL+  ++   F  +  F  VR     P+    FF  L + LFLA  +     
Sbjct: 182 VLWWISLLLLLAVSITYLFKTILFFEAVRREFRHPIRVNFFFAPLISILFLALGIPHSII 241

Query: 698 -ILISQIWSLAQIPVLVL--KIYSELISLSTSRI 728
             L S +W     P+L L  KIY + +S    R+
Sbjct: 242 SHLPSTLWYFLMAPILFLEMKIYGQWMSGGQRRL 275


>At1g28220 purine permease, putative
          Length = 351

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 27/119 (22%), Positives = 47/119 (38%), Gaps = 7/119 (5%)

Query: 622 FLLIYSFYVLKCYLV*FRKVGIRVTFMVSKLLLMPPALLTFFMQMAIFSFVRLTLMRPLL 681
           + L+  F ++ C L     V +   F+      +P     F +  A+F  V   +   ++
Sbjct: 201 YTLVLEFQLILCLLASI--VSVIGMFIAGDFKALPKEAREFKLGEALFYVV--AVFSAII 256

Query: 682 YPTFFLNTKLFLARKLILISQIWSLAQIP---VLVLKIYSELISLSTSRIIFLSIWGFL 737
           +  FFL     +     L+S I     +P   VL +  Y E         + LS+WGF+
Sbjct: 257 WQGFFLGAIGLIFSTSSLVSGIMISVLLPITEVLAVIFYHEKFQAEKGLSLALSLWGFV 315


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.368    0.167    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,455,618
Number of Sequences: 26719
Number of extensions: 656745
Number of successful extensions: 3431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3431
Number of HSP's gapped (non-prelim): 2
length of query: 1015
length of database: 11,318,596
effective HSP length: 109
effective length of query: 906
effective length of database: 8,406,225
effective search space: 7616039850
effective search space used: 7616039850
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 65 (29.6 bits)