BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144484.10 - phase: 0 
         (589 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g51280 DEAD-box protein abstrakt                                  1025  0.0
At4g33370 putative protein                                            884  0.0
At1g55150 unknown protein                                             304  1e-82
At2g47330 putative ATP-dependent RNA helicase                         300  1e-81
At5g63120 ATP-dependent RNA helicase-like protein                     300  1e-81
At1g20920 putative RNA helicase                                       294  1e-79
At2g33730 putative U5 small nuclear ribonucleoprotein, an RNA he...   293  1e-79
At3g58570 ATP-dependent RNA helicase-like protein                     288  4e-78
At3g58510 ATP-dependent RNA helicase-like protein                     288  6e-78
At2g42520 putative ATP-dependent RNA helicase                         288  8e-78
At3g01540 AT3g01540/F4P13_9                                           276  2e-74
At3g06480 putative RNA helicase                                       271  1e-72
At5g14610 DRH1 DEAD box protein - like                                254  9e-68
At1g31970 unknown protein                                             253  2e-67
At1g28180 hypothetical protein                                        228  9e-60
At1g77050                                                             224  1e-58
At5g60990 replication protein A1 - like                               214  8e-56
At1g16280 putative ATP-dependent RNA helicase                         214  1e-55
At3g09720 RNA helicase like protein                                   209  3e-54
At3g22330 DEAD-Box RNA helicase like protein                          207  2e-53

>At5g51280 DEAD-box protein abstrakt
          Length = 591

 Score = 1025 bits (2649), Expect = 0.0
 Identities = 512/589 (86%), Positives = 547/589 (91%), Gaps = 2/589 (0%)

Query: 1   MEEEDDYEEYIPVAKRRAMEAQKILQRKGKATAAIQEDDSEKLKVVETKPSLLVKASQLK 60
           MEE D Y EY+ VA+RRA+ AQKILQRKGKA+   +E D EKL   E KPSLLV+A+QLK
Sbjct: 5   MEEADSYIEYVSVAERRAIAAQKILQRKGKASELEEEADKEKL--AEAKPSLLVQATQLK 62

Query: 61  KDQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSK 120
           +D PE+S TEQI+ QEKEM+E+LSDKKTLMSVRELAKGITYTEPL TGWKPPLHIR+MS 
Sbjct: 63  RDVPEVSATEQIILQEKEMMEHLSDKKTLMSVRELAKGITYTEPLLTGWKPPLHIRKMSS 122

Query: 121 KDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILS 180
           K  DLI+KQWHIIVNG++IPPPIKNFKDM+FP P+L  LK KGIVQPTPIQVQGLPVIL+
Sbjct: 123 KQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILA 182

Query: 181 GRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVI 240
           GRDMIGIAFTGSGKTLVFVLPMIM+A+QEE+MMPI  GEGP GLI+CPSRELARQTYEV+
Sbjct: 183 GRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVV 242

Query: 241 EEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDN 300
           E+F+ PL EAGYP LR LLCIGGIDMRSQLE+VK+GVHIVVATPGRLKDMLAKKKM+LD 
Sbjct: 243 EQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDA 302

Query: 301 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVN 360
           CRYLTLDEADRLVDLGFEDDIREVFDHFK+QRQTLLFSATMPTKIQ FARSALVKP+ VN
Sbjct: 303 CRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVN 362

Query: 361 VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGV 420
           VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT PPVLIFCENKADVDDIHEYLLLKGV
Sbjct: 363 VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGV 422

Query: 421 EAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 480
           EAVAIHGGKDQE+REYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV
Sbjct: 423 EAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 482

Query: 481 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEEIT 540
           HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL DPME+ E I 
Sbjct: 483 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIA 542

Query: 541 GISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRGEI 589
             SGVKGCAYCGGLGHRIRDCPKLEHQKSVAI+N+RKDYFGSGGYRGEI
Sbjct: 543 NASGVKGCAYCGGLGHRIRDCPKLEHQKSVAISNSRKDYFGSGGYRGEI 591


>At4g33370 putative protein
          Length = 542

 Score =  884 bits (2285), Expect = 0.0
 Identities = 444/589 (75%), Positives = 487/589 (82%), Gaps = 47/589 (7%)

Query: 1   MEEEDDYEEYIPVAKRRAMEAQKILQRKGKATAAIQEDDSEKLKVVETKPSLLVKASQLK 60
           ME +D Y EY+PV +R A   +K+++  GK                              
Sbjct: 1   MEVDDGYVEYVPVEERLAQMKRKVVEEPGKG----------------------------- 31

Query: 61  KDQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSK 120
                             M+E+LSDKK LMSV ELA+GITYTEPL T WKPPLH+R+MS 
Sbjct: 32  ------------------MMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMST 73

Query: 121 KDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILS 180
           K  DLI+KQWHI VNGE+IPPPIKNF DM+FP P+L+MLK KGI+ PTPIQVQGLPV+LS
Sbjct: 74  KQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLS 133

Query: 181 GRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVI 240
           GRDMIGIAFTGSGKTLVFVLPMI++A+QEEIMMPI  GEGP  L+ICPSRELA+QTY+V+
Sbjct: 134 GRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVV 193

Query: 241 EEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDN 300
           E+F+  L E GYP LR LLCIGG+DMRSQL++VKKGVHIVVATPGRLKD+LAKKKM+LD 
Sbjct: 194 EQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDA 253

Query: 301 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVN 360
           CR LTLDEADRLVDLGFEDDIR VFDHFK+QRQTLLFSATMP KIQ FA SALVKP+ VN
Sbjct: 254 CRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVN 313

Query: 361 VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGV 420
           VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT PPVLIFCENKADVDDIHEYLLLKGV
Sbjct: 314 VGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGV 373

Query: 421 EAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 480
           EAVAIHGGKDQE+R+YAIS FKAGKKDVLVATDVASKGLDFPDIQHVINYDMP EIENYV
Sbjct: 374 EAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYV 433

Query: 481 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEEIT 540
           HRIGRTGRCGKTGIATTFINKNQSE TLLDLKHLLQEAKQRIPPVLAEL  PME+ E I 
Sbjct: 434 HRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIA 493

Query: 541 GISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRGEI 589
             SGVKGCAYCGGLGHRI  CPK EHQKSVAI+++RKD+FGS GYRGE+
Sbjct: 494 NASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV 542


>At1g55150 unknown protein
          Length = 501

 Score =  304 bits (778), Expect = 1e-82
 Identities = 163/418 (38%), Positives = 251/418 (59%), Gaps = 13/418 (3%)

Query: 115 IRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQG 174
           +  M+  + +  +K   I V G++IP P+K+F+D+ FPD +L+ +K  G  +PTPIQ QG
Sbjct: 70  VAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQG 129

Query: 175 LPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELAR 234
            P+ + GRD+IGIA TGSGKTL ++LP I+    + ++     G+GP  L++ P+RELA 
Sbjct: 130 WPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPML---AHGDGPIVLVLAPTRELAV 186

Query: 235 QTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKK 294
           Q  +   +F          +++     GG+    Q+  ++KGV IV+ATPGRL DM+   
Sbjct: 187 QIQQEASKF------GSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESN 240

Query: 295 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 354
             NL    YL LDEADR++D+GF+  IR++  H +  RQTL +SAT P +++  ++  L 
Sbjct: 241 NTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLY 300

Query: 355 KPIIVNVGRAGA-ANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDI 411
            P  V +G +   AN  + Q V+ + +  K   L++ L+       +L+F + K   D I
Sbjct: 301 NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQI 360

Query: 412 HEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 471
              L + G  A++IHG K Q ER++ +S F++GK  ++ ATDVA++GLD  D+++VINYD
Sbjct: 361 TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD 420

Query: 472 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 529
            P  +E+YVHRIGRTGR G  G A TF     +     +L ++LQEA Q++ P LA +
Sbjct: 421 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFA-KELTNILQEAGQKVSPELASM 477


>At2g47330 putative ATP-dependent RNA helicase
          Length = 760

 Score =  300 bits (769), Expect = 1e-81
 Identities = 187/468 (39%), Positives = 264/468 (55%), Gaps = 17/468 (3%)

Query: 85  DKKTLMSVRELAKGITYTEPLPTGWKPPLH-IRRMSKKDCDLIQKQWHIIVNGEEIPPPI 143
           DK+ +  +  L       EP+   +   L  I  M++++    +++  I V+G ++  P+
Sbjct: 168 DKRKIEPITALDHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPV 227

Query: 144 KNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMI 203
           K F+D  F   I+  +K +   +PT IQ Q LP++LSGRD+IGIA TGSGKT  FVLPMI
Sbjct: 228 KTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 287

Query: 204 MMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGG 263
           +  M +  +      EGP G+I  P+RELA Q +   ++F    K  G   LR     GG
Sbjct: 288 VHIMDQPELQR---DEGPIGVICAPTRELAHQIFLEAKKFS---KAYG---LRVSAVYGG 338

Query: 264 IDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 323
           +    Q + +K G  IVVATPGRL DML  K + +    YL LDEADR+ DLGFE  +R 
Sbjct: 339 MSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRS 398

Query: 324 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEA- 382
           +    +  RQTLLFSATMP K++  AR  L  PI V VG  G AN D+ Q V  +  +A 
Sbjct: 399 IVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAE 458

Query: 383 KIVYLLECL--QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISS 440
           K+ +LLE L        VL+F   KA VD+I   L L   +  A+HG KDQ  R   +  
Sbjct: 459 KLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQK 518

Query: 441 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG-KTGIATTFI 499
           FK+G   VL+ATDVA++GLD   ++ V+NYD+  +++ +VHRIGRTGR G + G+A T +
Sbjct: 519 FKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLV 578

Query: 500 NKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEEITGISGVKG 547
            + ++     +L + L  A Q +PP L +L   M+D    +   G KG
Sbjct: 579 TQREARFA-GELVNSLVAAGQNVPPELTDLA--MKDGRFKSKRDGRKG 623


>At5g63120 ATP-dependent RNA helicase-like protein
          Length = 591

 Score =  300 bits (768), Expect = 1e-81
 Identities = 172/419 (41%), Positives = 248/419 (59%), Gaps = 13/419 (3%)

Query: 115 IRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQG 174
           ++ M+++D  + + +  I V G ++P P+K F+D  FPD IL+ +   G  +PTPIQ QG
Sbjct: 136 VQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQG 195

Query: 175 LPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELAR 234
            P+ L GRD+IGIA TGSGKTL ++LP ++    +     +   +GP  LI+ P+RELA 
Sbjct: 196 WPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP---RLGQDDGPIVLILAPTRELAV 252

Query: 235 QTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKK 294
           Q  E   +F L    +G   +R     GG     Q+  +++GV IV+ATPGRL DML  +
Sbjct: 253 QIQEESRKFGL---RSG---VRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQ 306

Query: 295 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALV 354
             NL    YL LDEADR++D+GFE  IR++    +  RQTLL+SAT P +++  AR  L 
Sbjct: 307 HTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLR 366

Query: 355 KPIIVNVGRAGA-ANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENKADVDDI 411
            P    +G     AN  + Q +E V    K   LL  L++      +LIF E K   D +
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQV 426

Query: 412 HEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 471
              L + G  A+AIHG K Q ER+  ++ FK+G+  ++ ATDVA++GLD  DI+ V+NYD
Sbjct: 427 TRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYD 486

Query: 472 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELV 530
            P  +E+Y+HRIGRTGR G  G+A TF   + ++    +L  +LQEA Q +PP L+ LV
Sbjct: 487 FPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFA-RELVKILQEAGQVVPPTLSALV 544


>At1g20920 putative RNA helicase
          Length = 1166

 Score =  294 bits (752), Expect = 1e-79
 Identities = 170/470 (36%), Positives = 267/470 (56%), Gaps = 19/470 (4%)

Query: 115 IRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQG 174
           I RM++++ +  +K+  + V+G+++P PIK +        IL  +K     +P PIQ Q 
Sbjct: 500 ISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQA 559

Query: 175 LPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELAR 234
           LP+I+SGRD IG+A TGSGKTL FVLPM+     +    P+  G+GP GL++ P+REL +
Sbjct: 560 LPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP---PVEAGDGPIGLVMAPTRELVQ 616

Query: 235 QTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKK 294
           Q +  I +F  PL       +R +   GG  +  Q+  +K+G  IVV TPGR+ D+L   
Sbjct: 617 QIHSDIRKFSKPLG------IRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 670

Query: 295 KMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARS 351
              + N R   +L +DEADR+ D+GFE  I  +  + + +RQT+LFSAT P +++  AR 
Sbjct: 671 SGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARK 730

Query: 352 ALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVD 409
            L KP+ + VG     N D+ Q VE   +  + + LLE L +      +L+F +++   D
Sbjct: 731 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCD 790

Query: 410 DIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 469
            ++  ++      +++HGGKDQ +RE  IS FK    ++L+AT VA++GLD  +++ V+N
Sbjct: 791 ALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVN 850

Query: 470 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 529
           +D P   E+YVHR+GRTGR G+ G A TFI+++ ++    DL   L+ ++Q +P  L  L
Sbjct: 851 FDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA-PDLVKALELSEQPVPDDLKAL 909

Query: 530 VDPMEDNEEITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDY 579
            D      +  GI    G  Y GG G +  +  + E  +  A     K+Y
Sbjct: 910 ADGFMVKVK-QGIEQAHGTGY-GGSGFKFNE--EEEEVRKAAKKAQAKEY 955


>At2g33730 putative U5 small nuclear ribonucleoprotein, an RNA
           helicase
          Length = 733

 Score =  293 bits (751), Expect = 1e-79
 Identities = 178/522 (34%), Positives = 274/522 (52%), Gaps = 39/522 (7%)

Query: 37  EDDSEKLKVVETKP--SLLVKASQLKKDQPEISVTEQIVQQEKEMIENLSDKKTLMS--- 91
           ED S  + V+   P  + L+     +         +Q  + EKEM + +  K  ++    
Sbjct: 194 EDTSRDMNVLYQNPHEAQLLFGRGFRAGMDRREQKKQAAKHEKEMRDEIRKKDGIVEKPE 253

Query: 92  ------VRELAKGI--TYTEPLPTGWKPPLHIRRMSKKDCDLIQKQWHIIVNGEEIPPPI 143
                 VRE A     ++   +   W     +  M+++D  + ++ ++I   G  IP P+
Sbjct: 254 EAAAQRVREEAADTYDSFDMRVDRHWSDK-RLEEMTERDWRIFREDFNISYKGSRIPRPM 312

Query: 144 KNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMI 203
           +++++ +    +LK ++  G  +P+PIQ+  +P+ L  RD+IGIA TGSGKT  FVLPM+
Sbjct: 313 RSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 372

Query: 204 MMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGG 263
               +   M      EGP+ +++ P+RELA+Q  E   +F      A Y   R    +GG
Sbjct: 373 AYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF------AHYLGFRVTSIVGG 426

Query: 264 IDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDI-- 321
             +  Q   + +G  IV+ATPGRL D L ++   L+ C Y+ LDEADR++D+GFE  +  
Sbjct: 427 QSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAG 486

Query: 322 ---------------REVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGA 366
                           E  D  K  R T +FSATMP  ++  AR  L  P++V +G AG 
Sbjct: 487 VLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGK 546

Query: 367 ANLDVIQEVEYVKQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAI 425
               + Q V  +K+  K   L + L +      ++F   K + D I + L   G     +
Sbjct: 547 TTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTL 606

Query: 426 HGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGR 485
           HGGK QE+RE ++  F+A + +VLVATDV  +G+D PD+ HVINYDMP  IE Y HRIGR
Sbjct: 607 HGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGR 666

Query: 486 TGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 527
           TGR GK+G+AT+F+  + +E    DLK +L ++   +PP LA
Sbjct: 667 TGRAGKSGVATSFLTLHDTE-VFYDLKQMLVQSNSAVPPELA 707


>At3g58570 ATP-dependent RNA helicase-like protein
          Length = 646

 Score =  288 bits (738), Expect = 4e-78
 Identities = 171/472 (36%), Positives = 260/472 (54%), Gaps = 34/472 (7%)

Query: 132 IIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTG 191
           I  +G+ +PPP+  F ++   + +   ++    V+PTP+Q   +P++ +GRD++  A TG
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193

Query: 192 SGKTLVFVLPMIMMAMQEE-IMMPI-VPGEGPFGLIICPSRELARQTYEVIEEFLLPLKE 249
           SGKT  F  P+I   M+++ I  P  V G  P  +I+ P+RELA Q ++   +F     +
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSY---Q 250

Query: 250 AGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 309
            G   ++ ++  GG  +  Q+  +++GV I+VATPGRL D+L + +++L   R+L LDEA
Sbjct: 251 TG---VKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEA 307

Query: 310 DRLVDLGFEDDIREVFDHFKAQ----RQTLLFSATMPTKIQNFARSALVKPIIVNVGRAG 365
           DR++D+GFE  IR++           RQT+LFSAT P +IQ  A   L   I + VGR G
Sbjct: 308 DRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVG 367

Query: 366 AANLDVIQEVEYVKQEAKIVYLLECL--------QKTPPPVLIFCENKADVDDIHEYLLL 417
           ++   ++Q VE+V    K  +L++ L        Q      L+F E K   D +  +L +
Sbjct: 368 SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCI 427

Query: 418 KGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 477
            G  A  IHG + Q+ERE A+ SFK G+  +LVATDVA++GLD P + HV+N+D+P +I+
Sbjct: 428 NGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 487

Query: 478 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNE 537
           +YVHRIGRTGR G +G+AT F N N + T    L  L+QEA Q +P  L           
Sbjct: 488 DYVHRIGRTGRAGNSGLATAFFNDNNT-TMAKPLAELMQEANQEVPDWLTRYASR----- 541

Query: 538 EITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRGEI 589
                 G K     G  G R         ++S +      DY+G GG  G +
Sbjct: 542 --ASFGGGKNRRSGGRFGGRD------FRRESFSRGGGGADYYGGGGGYGGV 585


>At3g58510 ATP-dependent RNA helicase-like protein
          Length = 612

 Score =  288 bits (737), Expect = 6e-78
 Identities = 166/465 (35%), Positives = 258/465 (54%), Gaps = 26/465 (5%)

Query: 135 NGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGK 194
           +G ++PPP+  F D+   D +   ++    V+PTP+Q   +P++L+ RD++  A TGSGK
Sbjct: 142 SGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201

Query: 195 TLVFVLPMIMMAMQEEIMMPIVPGEG--PFGLIICPSRELARQTYEVIEEFLLPLKEAGY 252
           T  F  P+I   M+++ +          PF +I+ P+RELA Q ++  ++F     + G 
Sbjct: 202 TAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY---QTG- 257

Query: 253 PELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL 312
             ++ ++  GG  +  QL  +++G  I+VATPGRL D+L + ++++   R+L LDEADR+
Sbjct: 258 --VKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRM 315

Query: 313 VDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAAN 368
           +D+GFE  IR++ +      +  RQT+LFSAT P++IQ  A   +   I + VGR G++ 
Sbjct: 316 LDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSST 375

Query: 369 LDVIQEVEYVKQEAKIVYLLECL------QKTPPPVLIFCENKADVDDIHEYLLLKGVEA 422
             + Q VE+V++  K  +L++ L      Q      L+F E K   D +  +L +    A
Sbjct: 376 DLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPA 435

Query: 423 VAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHR 482
            +IHG + Q+ERE A+ SFK G+  +LVATDVA++GLD P + HV+N+D+P +I++YVHR
Sbjct: 436 TSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 495

Query: 483 IGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEEITGI 542
           IGRTGR GK+GIAT F N+N ++     L  L+QEA Q +P  L                
Sbjct: 496 IGRTGRAGKSGIATAFFNENNAQLA-RSLAELMQEANQEVPEWLTRYASRASFGGGKKRS 554

Query: 543 SGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRG 587
            G  G       G   R                  DY+G GGY G
Sbjct: 555 GGRFG-------GRDFRREGSYSRGGGGGGGGGGSDYYGGGGYGG 592


>At2g42520 putative ATP-dependent RNA helicase
          Length = 633

 Score =  288 bits (736), Expect = 8e-78
 Identities = 166/470 (35%), Positives = 262/470 (55%), Gaps = 35/470 (7%)

Query: 132 IIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTG 191
           I  +G+ +PPP+  F ++   + +   ++    V+PTP+Q   +P++L GRD++  A TG
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206

Query: 192 SGKTLVFVLPMIMMAMQEEIMMPIVPGEG--PFGLIICPSRELARQTYEVIEEFLLPLKE 249
           SGKT  F  P+I   M+++ +          P  +I+ P+RELA Q ++  ++F     +
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSY---Q 263

Query: 250 AGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 309
            G   ++ ++  GG  +  QL  +++GV I+VATPGRL D+L + ++++   R+L LDEA
Sbjct: 264 TG---VKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEA 320

Query: 310 DRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAG 365
           DR++D+GFE  IR++ +      +  RQTLLFSAT P +IQ  A   L   I + VGR G
Sbjct: 321 DRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG 380

Query: 366 AANLDVIQEVEYVKQEAKIVYLLECL--------QKTPPPVLIFCENKADVDDIHEYLLL 417
           ++   ++Q VE+V    K  +L++ L        Q      L+F E K   D +  +L +
Sbjct: 381 SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCI 440

Query: 418 KGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 477
            G  A +IHG + Q+ERE A+ +FK+G+  +LVATDVA++GLD P + HV+N+D+P +I+
Sbjct: 441 NGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 500

Query: 478 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNE 537
           +YVHRIGRTGR GK+G+AT F N   + +    L  L+QEA Q +P  L           
Sbjct: 501 DYVHRIGRTGRAGKSGLATAFFNDGNT-SLARPLAELMQEANQEVPEWLTRYASR----- 554

Query: 538 EITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRG 587
             +   G K     G  G R       + ++  +  + R  Y G GG  G
Sbjct: 555 --SSFGGGKNRRSGGRFGGR-------DFRREGSFGSGRGGYGGGGGGYG 595


>At3g01540 AT3g01540/F4P13_9
          Length = 619

 Score =  276 bits (706), Expect = 2e-74
 Identities = 162/409 (39%), Positives = 236/409 (57%), Gaps = 22/409 (5%)

Query: 128 KQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGI 187
           ++  I V+G ++PPP+ +F+   FP  +L+ + + G   PTPIQ Q  P+ + GRD++ I
Sbjct: 142 RRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAI 201

Query: 188 AFTGSGKTLVFVLP--MIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLL 245
           A TGSGKTL +++P  + +  ++ +  M      GP  L++ P+RELA Q  E   +F  
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM------GPTILVLSPTRELATQIQEEAVKF-- 253

Query: 246 PLKEAGYPELRPLLCI-GGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYL 304
                G        C+ GG     QL  +++G  IVVATPGRL D+L  ++++L    YL
Sbjct: 254 -----GRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYL 308

Query: 305 TLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRA 364
            LDEADR++D+GFE  IR++      +RQTL+++AT P  ++  A   LV P  VN+G  
Sbjct: 309 VLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNV 368

Query: 365 G--AANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENKADVDDIHEYLLLKGV 420
               AN  + Q +E V    K   L + L+   P   V+IFC  K   D +   L  +  
Sbjct: 369 DELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLT-RQF 427

Query: 421 EAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 480
            A AIHG K Q ER+  ++ F++G+  VLVATDVA++GLD  DI+ V+NYD P  +E+YV
Sbjct: 428 GAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYV 487

Query: 481 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 529
           HRIGRTGR G TG A TF   +Q      DL  +L+ A QR+PP + E+
Sbjct: 488 HRIGRTGRAGATGQAFTFFG-DQDSKHASDLIKILEGANQRVPPQIREM 535


>At3g06480 putative RNA helicase
          Length = 1088

 Score =  271 bits (692), Expect = 1e-72
 Identities = 164/411 (39%), Positives = 233/411 (55%), Gaps = 18/411 (4%)

Query: 124 DLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRD 183
           ++ +KQ  +   GE IP P   F+    P  IL+ L + G   PTPIQ Q  P+ L  RD
Sbjct: 415 EIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRD 474

Query: 184 MIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEF 243
           ++ IA TGSGKTL +++P  ++              GP  LI+ P+RELA Q  +    F
Sbjct: 475 IVAIAKTGSGKTLGYLIPAFILLRH----CRNDSRNGPTVLILAPTRELATQIQDEALRF 530

Query: 244 LLPLKEAGYPELRPLLCI-GGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCR 302
                  G        C+ GG     QL+ +++G  IVVATPGRL D+L  K ++     
Sbjct: 531 -------GRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVS 583

Query: 303 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVG 362
            L LDEADR++D+GFE  IR++ +    +RQTL+++AT P +++  A   LV P+ VN+G
Sbjct: 584 LLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIG 643

Query: 363 RAG--AANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENKADVDDIHEYLLLK 418
           R    AAN  + Q VE V Q  K   L + L  Q+    V+IFC  K   D +   +  +
Sbjct: 644 RVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVG-R 702

Query: 419 GVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIEN 478
              AV IHG K Q ER++ ++ F++GK  VL+ATDVA++GLD  DI+ VINYD P  +E+
Sbjct: 703 HFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVED 762

Query: 479 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 529
           YVHRIGRTGR G TG+A TF  + Q      DL  +L+ A Q++PP + ++
Sbjct: 763 YVHRIGRTGRAGATGVAFTFFTE-QDWKYAPDLIKVLEGANQQVPPQVRDI 812


>At5g14610 DRH1 DEAD box protein - like
          Length = 713

 Score =  254 bits (649), Expect = 9e-68
 Identities = 152/395 (38%), Positives = 223/395 (55%), Gaps = 20/395 (5%)

Query: 141 PPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVL 200
           PP   F          +M+ + G   P+PIQ Q  P+ +  RD++ IA TGSGKTL +++
Sbjct: 226 PPAAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLI 285

Query: 201 P--MIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPL 258
           P  M +  +  +  M      GP  L++ P+RELA Q        +  LK     ++   
Sbjct: 286 PGFMHLQRIHNDSRM------GPTILVLSPTRELATQIQ------VEALKFGKSSKISCA 333

Query: 259 LCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE 318
              GG     QL+ +++GV IVVATPGRL D+L  K+++L    YL LDEADR++D+GFE
Sbjct: 334 CLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFE 393

Query: 319 DDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAG--AANLDVIQEVE 376
             IR++ +    +RQTL+++AT P +++  A   LV P  VN+G      AN  + Q +E
Sbjct: 394 PQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIE 453

Query: 377 YVKQEAKIVYLLECLQKTPP--PVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEER 434
            +    K   L + L+   P   ++IFC  K   D +   L  +   A AIHG K Q ER
Sbjct: 454 VLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLT-RTFGAAAIHGDKSQAER 512

Query: 435 EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI 494
           +  ++ F++G+  VLVATDVA++GLD  DI+ V+NYD P  +E+YVHRIGRTGR G TG+
Sbjct: 513 DDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGL 572

Query: 495 ATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 529
           A TF   +Q      DL  +L+ A Q++PP + E+
Sbjct: 573 AYTFFG-DQDAKHASDLIKILEGANQKVPPQVREM 606


>At1g31970 unknown protein
          Length = 537

 Score =  253 bits (647), Expect = 2e-67
 Identities = 160/415 (38%), Positives = 241/415 (57%), Gaps = 36/415 (8%)

Query: 128 KQWHIIVNGEEIPPP----IKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRD 183
           +Q  ++V G+ +       +K F +   P+ +L   KT    +P+PIQ    P +L GRD
Sbjct: 96  EQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRD 153

Query: 184 MIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEG-----PFGLIICPSRELARQTYE 238
           +IGIA TGSGKTL F +P IM  +++   +    G G     P  L++ P+RELA Q  +
Sbjct: 154 LIGIAKTGSGKTLAFGIPAIMHVLKKNKKI----GGGSKKVNPTCLVLSPTRELAVQISD 209

Query: 239 VIEEFLLPLKEAGYP-ELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMN 297
           V       L+EAG P  L+ +   GG     Q+  ++ GV IV+ TPGRL+D++    + 
Sbjct: 210 V-------LREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLR 262

Query: 298 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL-VKP 356
           L +  ++ LDEADR++D+GFE+ +R +  +    RQ ++FSAT P  +   A+  +   P
Sbjct: 263 LSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNP 322

Query: 357 IIVNVGRAG-AANLDVIQEVEYVKQEAK---IVYLLECLQKTPPP-VLIFCENKADVDDI 411
           I V +G    AAN DV+Q +E + + A+   ++ LLE   K+    VL+F   K + + +
Sbjct: 323 IKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERL 382

Query: 412 HEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD 471
             +L  +G +AV+IHG K Q ER  ++S FK G   +LVATDVA++GLD PD++ VINY 
Sbjct: 383 ERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYT 442

Query: 472 MPAEIENYVHRIGRTGRCGKTGIATTF---INKNQSETTLLDLKHLLQEAKQRIP 523
            P   E+YVHRIGRTGR GK G+A TF   +NK  +     +L ++L+EA Q +P
Sbjct: 443 FPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAG----ELVNVLREAGQVVP 493


>At1g28180 hypothetical protein
          Length = 622

 Score =  228 bits (580), Expect = 9e-60
 Identities = 145/433 (33%), Positives = 217/433 (49%), Gaps = 55/433 (12%)

Query: 115 IRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQG 174
           +  M+++D  + ++ ++I   G +IP P++N+++                          
Sbjct: 206 LEEMNERDWRIFKEDFNISYRGSKIPHPMRNWEET------------------------- 240

Query: 175 LPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELAR 234
           +P+ L  RD+IGI+ TGSGKT  FVLPM+    +   M      EGP+ L++ P+RELA 
Sbjct: 241 IPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALVMVPTRELAH 300

Query: 235 QTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKK 294
           Q  E   +F      + Y   + +   G   +  Q   + +G  IV+ATPGRL D L ++
Sbjct: 301 QIEEETVKF------SRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCLERR 354

Query: 295 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-----------------KAQRQTLLF 337
            + L+ C YL LDEADR++D+ FE  + EV D                   K  R T +F
Sbjct: 355 YVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRTTYMF 414

Query: 338 SATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT--P 395
           SATM   ++  AR  L  P++V +G        + Q+V   K+  K   L + +      
Sbjct: 415 SATMLLSVERLARKFLRNPVVVTIGETTKF---ITQQVIMTKESDKFSRLKKLIDDLGDD 471

Query: 396 PPVLIFCENKADVDDIHEYLLLKG-VEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDV 454
              ++F   +  VD I + L   G      +H GK QE+R+Y++  FK  + +VLV TDV
Sbjct: 472 KTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDV 531

Query: 455 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 514
             +GLD  D+  VINYDMP  ++ Y HRIGRTGR GKTG+ATTF+   + +     LK  
Sbjct: 532 LGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTL-EDKDVFYGLKQK 590

Query: 515 LQEAKQRIPPVLA 527
           L E    +PP LA
Sbjct: 591 LNECNSLVPPELA 603


>At1g77050 
          Length = 513

 Score =  224 bits (570), Expect = 1e-58
 Identities = 134/394 (34%), Positives = 213/394 (54%), Gaps = 18/394 (4%)

Query: 146 FKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMM 205
           F+ +     +   +K KG   PTPIQ + +P+ILSG D++ +A TGSGKT  F++PM+  
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 206 AMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGID 265
             Q       VP  G   LI+ P+R+LA QT +  +E         + +LR  L +GG  
Sbjct: 90  LKQH------VPQGGVRALILSPTRDLAEQTLKFTKEL------GKFTDLRVSLLVGGDS 137

Query: 266 MRSQLEIVKKGVHIVVATPGRLKDMLAK-KKMNLDNCRYLTLDEADRLVDLGFEDDIREV 324
           M  Q E + KG  +++ATPGRL  +L++   M L    Y+  DEAD L  +GF + + ++
Sbjct: 138 MEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQI 197

Query: 325 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAK- 383
                  RQTLLFSAT+P+ +  FA++ L +P +V +      + D+      V+ E K 
Sbjct: 198 LTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKY 257

Query: 384 --IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 441
             ++YL+     +    LIF   K  V+ ++    L+ +E    +G  DQ+ R+  +S F
Sbjct: 258 SALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRF 317

Query: 442 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 501
           +A K  +L+ TD+A++G+D P + +VIN+D P   + +VHR+GR  R G+TG A +F+  
Sbjct: 318 RARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTP 377

Query: 502 NQSETTLLDLKHLLQEAKQRIPPVLAELVDPMED 535
            +    +LDL HL      R  P   E++  ME+
Sbjct: 378 -EDMPYMLDL-HLFLSKPVRPAPTEDEVLKNMEE 409


>At5g60990 replication protein A1 - like
          Length = 456

 Score =  214 bits (546), Expect = 8e-56
 Identities = 133/415 (32%), Positives = 217/415 (52%), Gaps = 13/415 (3%)

Query: 137 EEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTL 196
           EE    +K F ++   + ++K  +  G   P+ IQ + LP  L G+D+IG+A TGSGKT 
Sbjct: 2   EEENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTG 61

Query: 197 VFVLPMIMMAMQEEIMMPIVPGEGP----FGLIICPSRELARQTYEVIEEFLLPLKEAGY 252
            F +P++   ++         G  P    F  ++ P+RELA Q  E  E     +     
Sbjct: 62  AFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADIS---- 117

Query: 253 PELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADR 311
             LR  + +GGID   Q   + K  H++VATPGRL D ++  K  +L + +YL LDEADR
Sbjct: 118 --LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADR 175

Query: 312 LVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDV 371
           L++  FE  + ++ +    +R+T LFSATM  K++   R+ L  P+ +      +    +
Sbjct: 176 LLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTL 235

Query: 372 IQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENKADVDDIHEYLLLKGVEAVAIHGGKD 430
            Q+  +V  + K  YL+  L + P    +IF         +   L   G  A+ I G   
Sbjct: 236 KQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMT 295

Query: 431 QEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG 490
           Q +R  A++ FKAG+ ++LV TDVAS+GLD P +  VINYD+P   ++Y+HR+GRT R G
Sbjct: 296 QSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAG 355

Query: 491 KTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEEITGISGV 545
           ++G+  + +N+ + E   + ++ L+ +     P    E++  +E   E   +S +
Sbjct: 356 RSGVGISLVNQYELE-WYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAM 409


>At1g16280 putative ATP-dependent RNA helicase
          Length = 491

 Score =  214 bits (545), Expect = 1e-55
 Identities = 144/436 (33%), Positives = 233/436 (53%), Gaps = 36/436 (8%)

Query: 145 NFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIM 204
           NF+ +   +  ++  K  G+ +PTP+Q   +P IL+GRD++G+A TGSGKT  F LP++ 
Sbjct: 59  NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118

Query: 205 MAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYP-ELRPLLCIGG 263
              ++          G F L++ P+RELA   +++ E+F    K  G    LR  + +GG
Sbjct: 119 RLAEDPY--------GVFALVVTPTRELA---FQLAEQF----KALGSCLNLRCSVIVGG 163

Query: 264 IDMRSQLEIVKKGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDD 320
           +DM +Q   +    HIV+ TPGR+K +L             ++L LDEADR++D+GF+D+
Sbjct: 164 MDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDE 223

Query: 321 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVI-QEVEYVK 379
           +R +F      RQTLLFSATM + +Q     +  K         G   +D + Q+  +  
Sbjct: 224 LRTIFQCLPKSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYE-GLKTVDTLTQQFIFED 282

Query: 380 QEAKIVYLLECLQKTPPP----VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEERE 435
           ++AK +YL+  L +         +IF         +   L    VE +A+H    Q  R 
Sbjct: 283 KDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRL 342

Query: 436 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA 495
            A+S FK+GK  +L+ATDVAS+GLD P +  VINYD+P +  +YVHR+GRT R G+ G+A
Sbjct: 343 SALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLA 402

Query: 496 TTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEEITGISGVKGCAYC---- 551
            + I    +ET +  +  + +E  +++ P   +++    D+ E+T +S  K  A      
Sbjct: 403 VSII----TETDVKLIHKIEEEVGKKMEPYNKKVI---TDSLEVTKVSKAKRVAMMKMLD 455

Query: 552 GGLGHRIRDCPKLEHQ 567
            G   +++D  KL+ +
Sbjct: 456 NGFEDKVKDRRKLKRK 471


>At3g09720 RNA helicase like protein
          Length = 541

 Score =  209 bits (532), Expect = 3e-54
 Identities = 140/430 (32%), Positives = 224/430 (51%), Gaps = 32/430 (7%)

Query: 111 PPLHIRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRF----PDPILKMLKTKGIVQ 166
           P   + R  ++D  L +KQ+ I V+G  IPPP+K+F ++         IL+ L   G  +
Sbjct: 105 PKKELNRQMERDA-LSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKE 163

Query: 167 PTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLII 226
           PTPIQ Q +P++LSGR+    A TGSGKT  F+ PM++   +          +G   +I+
Sbjct: 164 PTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPST-------DGIRAVIL 216

Query: 227 CPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGR 286
            P+RELA QT    ++ +           +PL+           +  K    ++++TP R
Sbjct: 217 SPARELAAQTAREGKKLIKGSNFHIRLMTKPLV--------KTADFSKLWCDVLISTPMR 268

Query: 287 LKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQT-----LLFSATM 341
           LK  +  KK++L    YL LDE+D+L    FE  + +  D              LFSAT+
Sbjct: 269 LKRAIKAKKIDLSKVEYLVLDESDKL----FEQSLLKQIDCVVKACSNPSIIRSLFSATL 324

Query: 342 PTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYV-KQEAKIVYLLECLQKT-PPPVL 399
           P  ++  ARS +   + V +GR   A+  V Q++ +   +E K++ L +   ++  PPVL
Sbjct: 325 PDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVL 384

Query: 400 IFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 459
           IF ++K    ++++ L  + + A  IH      ERE A+  F+AG+K VL+ATDV ++G+
Sbjct: 385 IFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGM 444

Query: 460 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAK 519
           DF  I  VINYD P     Y+HRIGR+GR G++G A TF  + Q    L ++ + +  + 
Sbjct: 445 DFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTE-QDVPFLRNIANTMMSSG 503

Query: 520 QRIPPVLAEL 529
             +P  +  L
Sbjct: 504 CEVPSWIMSL 513


>At3g22330 DEAD-Box RNA helicase like protein
          Length = 616

 Score =  207 bits (526), Expect = 2e-53
 Identities = 132/407 (32%), Positives = 211/407 (51%), Gaps = 20/407 (4%)

Query: 155 ILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMP 214
           I+K L +KGI +  PIQ   L   + GRDMIG A TG+GKTL F +P+I   ++      
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174

Query: 215 IVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVK 274
              G  P  L++ P+RELARQ  +   E          P L  +   GG  +  Q+  + 
Sbjct: 175 --RGRNPLCLVLAPTRELARQVEKEFRE--------SAPSLDTICLYGGTPIGQQMRQLD 224

Query: 275 KGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQT 334
            GV + V TPGR+ D++ +  +NL   +++ LDEAD+++ +GF +D+  + +    +RQ+
Sbjct: 225 YGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQS 284

Query: 335 LLFSATMPTKIQNFARSALVKPIIVN-VGRAGAANLDVIQEVEYVKQE---AKIVYLLEC 390
           ++FSATMP+ I++  +  L  P+ V+ VG +     D I     +      A I+  L  
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344

Query: 391 LQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLV 450
                   ++F + K D D +  Y L +  +  A+HG   Q +RE  ++ F+ G  ++LV
Sbjct: 345 EHAKGGKCIVFTQTKRDADRL-SYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILV 403

Query: 451 ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 510
           ATDVA++GLD P++  +I+Y++P   E +VHR GRTGR GK G A    +++QS      
Sbjct: 404 ATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRA---- 459

Query: 511 LKHLLQEAKQRIPPVLAELVDPMEDNEEITGISGVKGCAYCGGLGHR 557
           +K + +E   R    L  +           GI    G ++ GG+  R
Sbjct: 460 VKIIEREVGSRFTE-LPSIAVERGSASMFEGIGSRSGGSFGGGMRDR 505


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,350,688
Number of Sequences: 26719
Number of extensions: 599380
Number of successful extensions: 2225
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 182
length of query: 589
length of database: 11,318,596
effective HSP length: 105
effective length of query: 484
effective length of database: 8,513,101
effective search space: 4120340884
effective search space used: 4120340884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)