BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144481.12 - phase: 0 /pseudo
(72 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60440 putative MADS box protein 103 2e-23
At1g65360 91 1e-19
At1g01530 hypothetical protein 90 2e-19
At2g24840 putative MADS-box protein 90 2e-19
At4g36590 putative MADS-box protein 87 2e-18
At2g34440 MADS-box protein (AGL29) 71 1e-13
At3g66656 SRF-type transcription factor 69 6e-13
At2g45660 MADS-box protein (AGL20) 67 2e-12
At1g72350 putative SRF-type transcription factor 65 5e-12
At2g45650 MADS-box protein (AGL6) 63 2e-11
At1g17310 transcription factor, putative 63 2e-11
At4g22950 putative MADS Box / AGL protein 62 7e-11
At3g54340 floral homeotic protein APETALA3 (AP3) 60 2e-10
At4g37940 MADS-box protein AGL17 -like protein 59 3e-10
At4g09960 MADS-box protein AGL11 59 3e-10
At3g57390 MADS transcription factor-like protein 59 3e-10
At5g51870 MADS box transcription factor-like 58 8e-10
At1g22130 hypothetical protein 57 2e-09
At4g18960 floral homeotic protein agamous 57 2e-09
At4g11880 MADS-box protein AGL14 56 3e-09
>At5g60440 putative MADS box protein
Length = 299
Score = 103 bits (257), Expect = 2e-23
Identities = 47/62 (75%), Positives = 56/62 (89%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
M NESNLQVTFSK +GLFKKASELCTLCGA +A++VFSP KVFSFGHPNVD+VIDR++
Sbjct: 16 MKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFI 75
Query: 61 SS 62
++
Sbjct: 76 NN 77
>At1g65360
Length = 226
Score = 90.9 bits (224), Expect = 1e-19
Identities = 43/59 (72%), Positives = 49/59 (82%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
M+ ESNLQVTFSK GLFKKASE CTLC A IA+IVFSP+ KVFSFGHPNVD ++D +
Sbjct: 16 MTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHF 74
>At1g01530 hypothetical protein
Length = 247
Score = 90.1 bits (222), Expect = 2e-19
Identities = 43/60 (71%), Positives = 50/60 (82%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
M+NESNLQVTFSK +GLFKK SELCTLC A IA+IVFSPS K +SFGHPNV+ ++D L
Sbjct: 16 MTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSL 75
>At2g24840 putative MADS-box protein
Length = 210
Score = 89.7 bits (221), Expect = 2e-19
Identities = 42/61 (68%), Positives = 52/61 (84%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ ES+ QVTFSK GLFKKASELCTLCGA I +IVFSP++K FSFGHP+V++V+DRY+
Sbjct: 18 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYV 77
Query: 61 S 61
S
Sbjct: 78 S 78
>At4g36590 putative MADS-box protein
Length = 248
Score = 86.7 bits (213), Expect = 2e-18
Identities = 44/59 (74%), Positives = 47/59 (79%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
M NESNLQVTFSK GLFKKASELCTL GA I LIVFSP KVFSFGHP+V +I R+
Sbjct: 16 MENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPSVQELIHRF 74
>At2g34440 MADS-box protein (AGL29)
Length = 172
Score = 70.9 bits (172), Expect = 1e-13
Identities = 32/53 (60%), Positives = 41/53 (76%)
Query: 8 QVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
QVTFSK GLFKKASEL TLC A + ++VFSP K FS+G PN+D+V +R++
Sbjct: 18 QVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNLDSVAERFM 70
>At3g66656 SRF-type transcription factor
Length = 178
Score = 68.6 bits (166), Expect = 6e-13
Identities = 31/52 (59%), Positives = 38/52 (72%)
Query: 8 QVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
QVTFSK GLFKKASEL TLC A + ++VFSP K +SFG PN D + +R+
Sbjct: 18 QVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKPNFDVIAERF 69
>At2g45660 MADS-box protein (AGL20)
Length = 214
Score = 66.6 bits (161), Expect = 2e-12
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N ++ QVTFSK NGL KKA EL LC A ++LI+FSP K++ F N+ IDRYL
Sbjct: 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYL 70
Query: 61 SSTTSK 66
T +
Sbjct: 71 RHTKDR 76
>At1g72350 putative SRF-type transcription factor
Length = 224
Score = 65.5 bits (158), Expect = 5e-12
Identities = 32/57 (56%), Positives = 44/57 (77%), Gaps = 2/57 (3%)
Query: 4 ESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
E+ QVTFSK +GLFKKA+EL LCGA I +I FS ++++SFG NV+++ID+YL
Sbjct: 55 ETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDRIYSFG--NVNSLIDKYL 109
>At2g45650 MADS-box protein (AGL6)
Length = 252
Score = 63.2 bits (152), Expect = 2e-11
Identities = 30/59 (50%), Positives = 40/59 (66%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N+ N QVTFSK NGL KKA EL LC A +ALI+FS K++ FG +++ I+RY
Sbjct: 11 IENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERY 69
>At1g17310 transcription factor, putative
Length = 217
Score = 63.2 bits (152), Expect = 2e-11
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ E+ QVTFSK GLFKK++EL L GA IA+I FS ++++ FGH VD +ID+YL
Sbjct: 57 IEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRFGH--VDALIDKYL 114
Query: 61 SSTTSKQWPYA 71
+ K Y+
Sbjct: 115 RKSPVKLEGYS 125
>At4g22950 putative MADS Box / AGL protein
Length = 219
Score = 61.6 bits (148), Expect = 7e-11
Identities = 28/59 (47%), Positives = 39/59 (65%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N ++ QVTFSK NGL KKA EL LC A +AL++FSP K++ F ++ I+RY
Sbjct: 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERY 69
>At3g54340 floral homeotic protein APETALA3 (AP3)
Length = 232
Score = 60.5 bits (145), Expect = 2e-10
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDT--VIDR 58
+ N++N QVT+SK NGLFKKA EL LC A +++I+FS S K+ + PN T ++D
Sbjct: 11 IENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDL 70
Query: 59 YLSSTTSKQW 68
Y + + W
Sbjct: 71 YQTISDVDVW 80
>At4g37940 MADS-box protein AGL17 -like protein
Length = 228
Score = 59.3 bits (142), Expect = 3e-10
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ + ++ QVTFSK GL KKA EL LC A + LI+FS + K++ F ++ +VIDRY
Sbjct: 11 IDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYN 70
Query: 61 SSTTSKQ 67
S +Q
Sbjct: 71 KSKIEQQ 77
>At4g09960 MADS-box protein AGL11
Length = 230
Score = 59.3 bits (142), Expect = 3e-10
Identities = 28/59 (47%), Positives = 39/59 (65%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + N+ + I+RY
Sbjct: 11 IENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERY 69
>At3g57390 MADS transcription factor-like protein
Length = 256
Score = 59.3 bits (142), Expect = 3e-10
Identities = 29/67 (43%), Positives = 43/67 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N ++ QVTFSK NGL KKA EL LC A +ALI+FS + K++ F ++ ++ RY
Sbjct: 11 IENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSVCMEQILSRYG 70
Query: 61 SSTTSKQ 67
+T S +
Sbjct: 71 YTTASTE 77
>At5g51870 MADS box transcription factor-like
Length = 207
Score = 58.2 bits (139), Expect = 8e-10
Identities = 28/59 (47%), Positives = 39/59 (65%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N ++ QVTFSK +GLFKKA EL LC A +A IVFS S ++ + ++ +IDRY
Sbjct: 11 IENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLHEYSSSQMEKIIDRY 69
>At1g22130 hypothetical protein
Length = 335
Score = 57.0 bits (136), Expect = 2e-09
Identities = 30/62 (48%), Positives = 41/62 (65%), Gaps = 1/62 (1%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF-GHPNVDTVIDRY 59
+ N +N QVTFSK NGL KKA EL LC IALI+FSPS+++ F G ++ V R+
Sbjct: 11 IENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFSGKTRIEDVFSRF 70
Query: 60 LS 61
++
Sbjct: 71 IN 72
>At4g18960 floral homeotic protein agamous
Length = 284
Score = 56.6 bits (135), Expect = 2e-09
Identities = 28/59 (47%), Positives = 38/59 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + +V I+RY
Sbjct: 59 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERY 117
>At4g11880 MADS-box protein AGL14
Length = 221
Score = 56.2 bits (134), Expect = 3e-09
Identities = 28/60 (46%), Positives = 39/60 (64%), Gaps = 1/60 (1%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF-GHPNVDTVIDRY 59
+ N ++ QVTFSK NGL KKA EL LC A +ALI+FSP K++ F ++ ++RY
Sbjct: 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERY 70
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,559,135
Number of Sequences: 26719
Number of extensions: 48818
Number of successful extensions: 203
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 106
length of query: 72
length of database: 11,318,596
effective HSP length: 48
effective length of query: 24
effective length of database: 10,036,084
effective search space: 240866016
effective search space used: 240866016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC144481.12