BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144477.8 + phase: 0 /pseudo
(879 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47910 reverse transcriptase, putative 268 1e-71
At4g09710 RNA-directed DNA polymerase -like protein 261 9e-70
At4g10830 putative protein 261 1e-69
At2g01840 putative non-LTR retroelement reverse transcriptase 261 1e-69
At2g11240 pseudogene 255 7e-68
At2g45230 putative non-LTR retroelement reverse transcriptase 252 6e-67
At2g17610 putative non-LTR retroelement reverse transcriptase 252 7e-67
At3g45550 putative protein 251 1e-66
At2g31520 putative non-LTR retroelement reverse transcriptase 250 3e-66
At2g25550 putative non-LTR retroelement reverse transcriptase 250 3e-66
At2g05200 putative non-LTR retroelement reverse transcriptase 249 4e-66
At2g17910 putative non-LTR retroelement reverse transcriptase 246 5e-65
At1g24640 hypothetical protein 244 2e-64
At2g41580 putative non-LTR retroelement reverse transcriptase 231 1e-60
At2g16680 putative non-LTR retroelement reverse transcriptase 230 3e-60
At3g32110 non-LTR reverse transcriptase, putative 209 5e-54
At2g31080 putative non-LTR retroelement reverse transcriptase 204 2e-52
At4g15590 reverse transcriptase like protein 197 2e-50
At2g15540 putative non-LTR retroelement reverse transcriptase 168 1e-41
At2g05980 putative non-LTR retroelement reverse transcriptase 157 2e-38
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 268 bits (685), Expect = 1e-71
Identities = 133/299 (44%), Positives = 184/299 (61%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E+ H +++ K A+K D+SK YD ++W+++ ++ KM F
Sbjct: 323 AFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGF 382
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
++W+ WIM C+ TV Y VL+NG IIP RGLRQGDPLSPYLFI+C E L A +RK
Sbjct: 383 CEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKA 442
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E + I G+K+ +P +SHLLFADD F + N +Q + IL YE GQ +N K
Sbjct: 443 ERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSK 502
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V ++ +I ILG+ + G G YLGLP +G SK FSF++DR+ +IN
Sbjct: 503 SSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRING 562
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS+K LSK G+EV+IK V ++P Y MS F P ++ ++ + FWW S G SRG+
Sbjct: 563 WSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWS-SNGDSRGM 620
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 261 bits (668), Expect = 9e-70
Identities = 126/289 (43%), Positives = 180/289 (61%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR+I DN + EI+H+++ K A+K D+SK YD I W++L+ V+ ++ F
Sbjct: 480 AFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGF 539
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
D+W++W+M CV TV+Y L+NG ++P RGLRQGDPLSPYLFI+C E LS L RK
Sbjct: 540 HDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKA 599
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ +G + G+++ +P ++HLLFADD F +TN + IL YE A GQ++NL K
Sbjct: 600 QEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAK 659
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I S + + L + G GKYLGLP GR K+ FS I DRI ++ +
Sbjct: 660 SAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHS 719
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
WS + LS AG+++L+K VL S+P+Y M F P SLC +I+ ++ FWW
Sbjct: 720 WSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWW 768
>At4g10830 putative protein
Length = 1294
Score = 261 bits (667), Expect = 1e-69
Identities = 125/289 (43%), Positives = 184/289 (63%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR + DN M A E++H +K++ + + A+K D+SK YD ++W++L M F
Sbjct: 901 AFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGF 960
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
S+ W+KWIM V++VNY VLVNG I P RG+RQGDPLSPYLFI+C + L+ L++
Sbjct: 961 SETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNR 1020
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
A G+I G++I N P ++HL FADD F ++NV ++ + YE GQ +N+ K
Sbjct: 1021 VAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSK 1080
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V T N + +ILG+Q G GKYLGLP GR K+ F++I +R+ K+ +
Sbjct: 1081 SMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSS 1140
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
WS+K LS AG+E+++K V S+P Y MS F P+++ EIE ++ +FWW
Sbjct: 1141 WSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWW 1189
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 261 bits (667), Expect = 1e-69
Identities = 127/302 (42%), Positives = 187/302 (61%), Gaps = 3/302 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV G++I DN + A E++H +KS+ + + G A+K DISK YD ++W++L VM ++ F
Sbjct: 901 AFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGF 960
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ +WVKWIM CV +V+Y VL+NG +I P RG+RQGDPLSPYLF+ C E LS ++RK
Sbjct: 961 APRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKA 1020
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E +I+G+KI + ISHLLFADD F R + ++ I YE A GQ +N K
Sbjct: 1021 EVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAK 1080
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I + + T + +LG+ V G GKYLGLP +GR K F +I ++ ++
Sbjct: 1081 SSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEG 1140
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGLT 358
W+ LS AG+E++IK + ++P Y M+ F P +C+EI ++ +FWWG ++ G
Sbjct: 1141 WAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWGK---ENEGDL 1197
Query: 359 GF 360
GF
Sbjct: 1198 GF 1199
>At2g11240 pseudogene
Length = 1044
Score = 255 bits (652), Expect = 7e-68
Identities = 130/297 (43%), Positives = 177/297 (58%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV R+ DN + E +HY+KS K+ A+K ++SK YD I+W +++ VM +M F
Sbjct: 365 AFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGF 424
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
W+ WI+ C+ TV+Y L+NG + P RGLRQGDPLSP+LFIIC E LS L RK
Sbjct: 425 HQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKA 484
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G + G+++ P ++HLLFADD F R+++ IL YE A GQ +N K
Sbjct: 485 QLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSK 544
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I SR + ILG+Q+V G GKYLGLP M GR K+ F+ I DRI ++
Sbjct: 545 SAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLS 604
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
WSS+ LS AG+ ++K VL S+PTY MS F VSLC I+ + FWW S + +
Sbjct: 605 WSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADKKK 661
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 252 bits (644), Expect = 6e-67
Identities = 128/299 (42%), Positives = 182/299 (60%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E++H + S K + A+K DISK YD ++W +L M + F
Sbjct: 539 AFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGF 598
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+D W++ IM CV++V Y VL+NG +IIP RGLRQGDPLSPYLF+IC E L +++
Sbjct: 599 ADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSA 658
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E + +I G+K+ AP ISHLLFADD + + N + ++ I+ Y A GQ VN K
Sbjct: 659 EQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLK 718
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I+ +++ + LG++ G G YLGLP SK +T S++KDR+ KK+
Sbjct: 719 SSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLG 778
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
W S LS G+E+L+K V ++PTY MS F P ++C +IE +M FWW + + RGL
Sbjct: 779 WQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNK-KEGRGL 836
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 252 bits (643), Expect = 7e-67
Identities = 121/285 (42%), Positives = 181/285 (63%), Gaps = 1/285 (0%)
Query: 66 ILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRFSDQWVKW 125
I DN + A E+IH + +K K + A KLDI+K +D I+W ++ +M +M FS++W W
Sbjct: 2 ITDNILIAHELIHSLHTK-KLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNW 60
Query: 126 IMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKDEARGEIN 185
IM C+ T Y +L+NG + +IIP RG+RQGDP+SPYL+++C EGLSAL++ +++
Sbjct: 61 IMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLH 120
Query: 186 GVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQKSEIFCSR 245
G K N P ISHLLFA D +F + +++ + +L YE+A GQAVN QKS I +
Sbjct: 121 GFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGK 180
Query: 246 NVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINLWSSKSLS 305
+ ++ +LG+ G G+YLGLP +GR+K + FSFI + +K++ W +K LS
Sbjct: 181 GLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLS 240
Query: 306 KAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHS 350
AG+EVLIK ++ +IPTY MS F P+ L +I M FWW ++
Sbjct: 241 PAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNT 285
>At3g45550 putative protein
Length = 851
Score = 251 bits (642), Expect = 1e-66
Identities = 127/299 (42%), Positives = 179/299 (59%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR I DN M A EI+H +K + + K A+K D+SK YD ++W +L M F
Sbjct: 160 AFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 219
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
D+W+ WIM V++V+Y VL+NG I P RG+RQGDPLSPYLFI+C + LS L++
Sbjct: 220 CDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVK 279
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G+I GV+I N AP I+HL FADD F + NV ++ + YE GQ +N+QK
Sbjct: 280 ASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQK 339
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + + ++L + G GKYLGLP GR KK F++I DR+ ++
Sbjct: 340 SLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTAS 399
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS+K LS AG+E+L+K V ++P Y MS F P + EIE ++ +FWW RG+
Sbjct: 400 WSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWW-EKASNKRGI 457
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 250 bits (638), Expect = 3e-66
Identities = 125/299 (41%), Positives = 180/299 (59%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR I DN M A E++H +K + + K A+K D+SK YD ++W +L M F
Sbjct: 695 AFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 754
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
++W+ WIM V++V+Y VL+NG I P RG+RQGDPLSPYLFI+C + LS L+
Sbjct: 755 CNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGR 814
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G++ GV+I N AP I+HL FADD F + NV ++ + YE GQ +N+QK
Sbjct: 815 ASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQK 874
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + + + IL + G GKYLGLP GR KK F +I DR+ K+ +
Sbjct: 875 SMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTST 934
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS++ LS AG+E+++K V ++P Y MS F P + EIE ++ +FWW + Q RG+
Sbjct: 935 WSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGI 992
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 250 bits (638), Expect = 3e-66
Identities = 125/299 (41%), Positives = 180/299 (59%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR I DN M A E++H +K + + K A+K D+SK YD ++W +L M F
Sbjct: 921 AFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 980
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
++W+ WIM V++V+Y VL+NG I P RG+RQGDPLSPYLFI+C + LS L+
Sbjct: 981 CNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGR 1040
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G++ GV+I N AP I+HL FADD F + NV ++ + YE GQ +N+QK
Sbjct: 1041 ASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQK 1100
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + + + IL + G GKYLGLP GR KK F +I DR+ K+ +
Sbjct: 1101 SMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTST 1160
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS++ LS AG+E+++K V ++P Y MS F P + EIE ++ +FWW + Q RG+
Sbjct: 1161 WSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGI 1218
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 249 bits (637), Expect = 4e-66
Identities = 118/289 (40%), Positives = 182/289 (62%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + E++H++++ K A+K D+SK YD ++W +L+ V+ + F
Sbjct: 434 AFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGF 493
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
W+ W++ CV +V+Y L+NG +++P RGLRQGDPLSP LFI+C E LS L +
Sbjct: 494 HSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRA 553
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ ++ GV++ N P ++HLLFADD F +++ + +K+ ILS Y +A GQ++N K
Sbjct: 554 QRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHK 613
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S + S +V + IL ++ GTGKYLGLP GR K+ F I D+I +K +
Sbjct: 614 SSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHS 673
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
W+S+ LS+AG++V++K VL S+P Y MS F P +LC +I+ ++ FWW
Sbjct: 674 WASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWW 722
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 246 bits (627), Expect = 5e-65
Identities = 118/289 (40%), Positives = 178/289 (60%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV R I DN + A E+IH +++ + K A K D+SK YD ++W +L +MT + F
Sbjct: 517 AFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGF 576
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+++W+ WIM CV +V+Y VL+NG IIP RG+RQGDPLSP LF++C E L ++ K
Sbjct: 577 NNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKA 636
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E G+I G++ + ++HLLFADD L + + ++ LS Y + GQ +NL K
Sbjct: 637 EQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNK 696
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I +NV + + I S G+ + GTGKYLGLP + SK+ F FIK+++ ++
Sbjct: 697 SAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTG 756
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
W +K+LS+ G+EVL+K + ++P Y MS F P +LC ++ +M FWW
Sbjct: 757 WYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWW 805
>At1g24640 hypothetical protein
Length = 1270
Score = 244 bits (623), Expect = 2e-64
Identities = 119/289 (41%), Positives = 175/289 (60%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFVS R I DN + A E++H +K + A+K D+SK YD ++WSYLR ++ + F
Sbjct: 502 AFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGF 561
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+WV WIM+CV +V Y VL+N II RGLRQGDPLSP+LF++C EGL+ L+ K
Sbjct: 562 HLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKA 621
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G + G++ N P++ HLLFADD + + +Q+ ++ IL Y A GQ +NL K
Sbjct: 622 QWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNK 681
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + I + LG+ G G YLGLP SK ++KDR+ +K+++
Sbjct: 682 SSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDV 741
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
W ++ LS+ G+EVL+K V ++P + MS F P++ C+ +E M SFWW
Sbjct: 742 WFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWW 790
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 231 bits (590), Expect = 1e-60
Identities = 109/289 (37%), Positives = 173/289 (59%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV+ R + DN + A EI+H +++ K K K D+SK YD ++W +L+G++ + F
Sbjct: 268 AFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGF 327
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ W+ W+M CV +V+Y VL+NG I P RGLRQGDPLSP+LF++C E L ++ +
Sbjct: 328 NSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQA 387
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E G+I+G++ P ++HLLFADD L + + + +++ LS Y GQ +N +K
Sbjct: 388 EKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEK 447
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V I + G+Q GTGKYLGLP SK+ F FIK+++ +++
Sbjct: 448 SAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSG 507
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
W +K+LS+ G+++L+K + + P Y M+ F +LC ++ +M FWW
Sbjct: 508 WYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWW 556
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 230 bits (586), Expect = 3e-60
Identities = 108/289 (37%), Positives = 171/289 (58%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF + R I DN + A EI+H +++ K K K D+SK YD ++WS+L+ ++ + F
Sbjct: 491 AFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGF 550
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+D+W+ WIM CV +V Y VL+NG I P RG+RQGDP+SP+LF++C E L ++++
Sbjct: 551 NDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQA 610
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E +++G++ + P ++HLLF DD L R +M LS Y GQ +N++K
Sbjct: 611 ENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEK 670
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V I + G+ + GTGKYLGLP + SK+ F +IK+++ ++
Sbjct: 671 SSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSG 730
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
W K+LS+ G+E+L+K + ++P Y M+ F P LC ++ +M FWW
Sbjct: 731 WYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWW 779
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 209 bits (532), Expect = 5e-54
Identities = 114/290 (39%), Positives = 161/290 (55%), Gaps = 1/290 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
+F+ GR DN + E++H M+ K KG KG LKLD+ K YD I W L +
Sbjct: 1079 SFIPGRLSTDNIVVVQEVVHSMRRK-KGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGL 1137
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
WV+WIM CVE + +L NG+ P RGLRQGDPLSPYLF++C+E L L+
Sbjct: 1138 PGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESS 1197
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
A + +KI + P +SH+ FADD LF ++DQ +R +L + A GQ V+L+K
Sbjct: 1198 IAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEK 1257
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S+I+ S+NVL + I+ G++ GKYLG+P + R K TF + R ++
Sbjct: 1258 SKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAG 1317
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWG 348
W + LS AGR L K VL SI + MS P S D ++++ +F WG
Sbjct: 1318 WKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWG 1367
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 204 bits (518), Expect = 2e-52
Identities = 112/290 (38%), Positives = 159/290 (54%), Gaps = 1/290 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
+F+ GR +DN + E +H M+ K KG+KG LKLD+ K YD + W +L+ +
Sbjct: 403 SFIPGRLSIDNIVLVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGL 461
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
S+ W IM V + VL NG+ +P RGLRQGDPLSPYLF++C+E L L+
Sbjct: 462 SEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEAS 521
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ E + + +SH+ FADD LF +V Q +R +L + A GQ V+L+K
Sbjct: 522 VGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEK 581
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S+IF S NV + I+ G+ GKYLG+P + R K TF + +R+ ++
Sbjct: 582 SKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAG 641
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWG 348
W +SLS AGR L K VL SIP + MS PVS D ++R +F WG
Sbjct: 642 WKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWG 691
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 197 bits (502), Expect = 2e-50
Identities = 109/290 (37%), Positives = 155/290 (52%), Gaps = 18/290 (6%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
+F+ GR DN + E +H M+ K KG+KG LKLD+ K YD I W +L +
Sbjct: 355 SFIPGRLSFDNIVVVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGL 413
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
S+ W+K IM CV +L NG+ P RGLRQGDP+SPYLF++C+E L +
Sbjct: 414 SEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETA 473
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
RG+ + I P +SH+ FADD LF +V Q V+L+K
Sbjct: 474 VGRGDWKSISISQGGPKVSHVCFADDLILFAEASV-----------------AQKVSLEK 516
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S+IF S NV + I + G+ GKYLG+P + R K TF + +R+ +++
Sbjct: 517 SKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSG 576
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWG 348
W S+SLS AGR L K VL SIP + MS P SL ++++++ +F WG
Sbjct: 577 WKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWG 626
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 168 bits (426), Expect = 1e-41
Identities = 85/203 (41%), Positives = 122/203 (59%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV+ R I DN + A E H +++ KK A+K D+SK YD ++WS+LR +M KM F
Sbjct: 486 AFVAERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGF 545
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ +WV WI+ C+ +V+Y +L+NG I P RG+RQGDP+SP+LFI+C E L A ++
Sbjct: 546 AQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDA 605
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E G I G++I +P SHLLFADD F + + Q ++ IL Y A GQ +N K
Sbjct: 606 EWHGRIQGLQISRASPSTSHLLFADDSLFFCKADPLQGKEIIDILRLYGEASGQQLNPDK 665
Query: 239 SEIFCSRNVLTTVHNNIASILGV 261
S + V ++ N I LG+
Sbjct: 666 SSVMFGHEVDNSIRNTIKVSLGI 688
>At2g05980 putative non-LTR retroelement reverse transcriptase
Length = 1352
Score = 157 bits (397), Expect = 2e-38
Identities = 97/293 (33%), Positives = 156/293 (53%), Gaps = 12/293 (4%)
Query: 59 AFVSGRSILDNTMDAIEIIH-YMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMR 117
AF+ R +++N + A E++ Y K + + ALK+DISK +D + W +L V+ +
Sbjct: 711 AFIKDRLMMENLLLASELVKDYHKESISSRS---ALKIDISKAFDFVQWPFLINVLKAIH 767
Query: 118 FSDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRK 177
+ ++ WI +C+ T ++ V VNG++ RGLRQG LSPYL++IC+ LS ++ K
Sbjct: 768 LPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDK 827
Query: 178 DEARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQ 237
+I+ C N ++HL FADD +F AI + ++L+
Sbjct: 828 AAVEKKISYHPRCRNMN-LTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLE 886
Query: 238 KSEIF---CSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWK 294
KS IF S N T++ LG V KYLGLP + R +S + + ++I
Sbjct: 887 KSTIFMAGISPNAKTSILQQFPFELGTLPV----KYLGLPLLTKRMTQSDYLPLVEKIRA 942
Query: 295 KINLWSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
+I W+++ LS AGR LIK VL SI +++S+F P + EIE++ ++F W
Sbjct: 943 RITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLW 995
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.354 0.159 0.546
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,504,411
Number of Sequences: 26719
Number of extensions: 620506
Number of successful extensions: 3014
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2866
Number of HSP's gapped (non-prelim): 85
length of query: 879
length of database: 11,318,596
effective HSP length: 108
effective length of query: 771
effective length of database: 8,432,944
effective search space: 6501799824
effective search space used: 6501799824
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144477.8