BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144430.7 + phase: 0 /pseudo
         (491 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g01810 unknown protein                                              33  0.47
At5g05840 putative protein                                             30  2.3
At2g41520 Unknown protein                                              29  5.2
At5g57930 unknown protein                                              28  8.8

>At3g01810 unknown protein
          Length = 921

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 26/95 (27%), Positives = 40/95 (41%), Gaps = 20/95 (21%)

Query: 3   TNGFGSNILILDG-KNWERWSALMRSLFGAQDVSD--------------LVQVLKNLLQI 47
           T+ FGS   + +   NW RW   +  LFG  D  D                 +LK L  +
Sbjct: 708 TSSFGSGAQLKNSIGNWSRW---LTDLFGIDDEDDDSSDENSYVEKSFKTFNLLKALSDL 764

Query: 48  PLMCREQLTNKARRKIVKLCSTFNKMLIINILRRF 82
            ++ ++ L N + RK  ++C  F   LI  +L  F
Sbjct: 765 MMLPKDMLLNSSVRK--EVCPMFGAPLIKRVLNNF 797


>At5g05840 putative protein
          Length = 439

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 79  LRRFQNQLDPKK-HGIFWRIIIMGEKR*NKSSC 110
           LRRF   LDPK    +F R + MGEK+ N   C
Sbjct: 224 LRRFLQGLDPKSTANLFARSVCMGEKKINDEDC 256


>At2g41520 Unknown protein
          Length = 1108

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 2   NTNGFGSNI--LILDGKNWERWSALMRSLFGAQDVSDLVQVLKNLLQIPLMCREQLTNKA 59
           N NG GS    LI+    W RW+ + +S F   ++   + +L+ L Q+   C E    + 
Sbjct: 765 NVNGLGSTYHSLIV----W-RWNKISKSHFYLGNLEKALDILEKLQQVEYTCNEN-QEEC 818

Query: 60  RRKIVKLCSTFNKML 74
           R     L +T +++L
Sbjct: 819 RESPASLVATISELL 833


>At5g57930 unknown protein
          Length = 440

 Score = 28.5 bits (62), Expect = 8.8
 Identities = 14/47 (29%), Positives = 24/47 (50%)

Query: 270 SAIIVKNLAILLMNVGSRKIRRLKKPILLMKVTLMQCC*WLLHVKIG 316
           + ++VK+L  L   V + +IR +     LMKV  +  C W   + +G
Sbjct: 126 NGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVG 172


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.371    0.167    0.604 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,166,648
Number of Sequences: 26719
Number of extensions: 274705
Number of successful extensions: 2092
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2091
Number of HSP's gapped (non-prelim): 4
length of query: 491
length of database: 11,318,596
effective HSP length: 103
effective length of query: 388
effective length of database: 8,566,539
effective search space: 3323817132
effective search space used: 3323817132
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 62 (28.5 bits)