BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144406.8 + phase: 0 /pseudo
(106 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ndhA -chloroplast genome- NADH dehydrogenase ND1 48 9e-07
At5g47260 NBS/LRR disease resistance protein 27 1.7
At5g20990 MOLYBDOPTERIN BIOSYNTHESIS CNX1 PROTEIN 27 2.2
At5g63590 flavonol synthase 26 2.9
At2g37790 putative alcohol dehydrogenase 26 2.9
At5g08640 flavonol synthase (FLS) (sp|Q96330) 25 4.9
At1g55860 ubiquitin-protein ligase 1, putative 25 4.9
At5g20850 RAD51 homolog (AtRAD51) 25 8.4
At2g37770 putative aldo/keto reductase 25 8.4
>ndhA -chloroplast genome- NADH dehydrogenase ND1
Length = 360
Score = 47.8 bits (112), Expect = 9e-07
Identities = 21/34 (61%), Positives = 25/34 (72%)
Query: 17 VMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
++F IS LAE R PFDLPEAE E +AGY EY+
Sbjct: 216 IIFLISSLAECERLPFDLPEAEEELIAGYQTEYS 249
>At5g47260 NBS/LRR disease resistance protein
Length = 885
Score = 26.9 bits (58), Expect = 1.7
Identities = 17/42 (40%), Positives = 21/42 (49%), Gaps = 6/42 (14%)
Query: 7 WSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVE 48
W+ +P FPVL I R E R PF+ +ES G VE
Sbjct: 797 WTPLP-FPVLEYLVIRRCPELRRLPFN-----SESTIGNQVE 832
>At5g20990 MOLYBDOPTERIN BIOSYNTHESIS CNX1 PROTEIN
Length = 670
Score = 26.6 bits (57), Expect = 2.2
Identities = 25/68 (36%), Positives = 33/68 (47%), Gaps = 5/68 (7%)
Query: 14 PVLVMFFISR---LAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRG 70
PV+V + + LAE RAP LP A GY V A D P++ E+ G+ G
Sbjct: 35 PVIVSLYEALGKVLAEDIRAPDPLPPYPASVKDGYAV-VASDGPGEYPVITESRA-GNDG 92
Query: 71 LILTETRG 78
L +T T G
Sbjct: 93 LGVTVTPG 100
>At5g63590 flavonol synthase
Length = 308
Score = 26.2 bits (56), Expect = 2.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 21 ISRLAETNRAPFDLPEAEAESVA---------GYNVEYARD 52
I RL + F+LPE E E+VA GY +Y +D
Sbjct: 53 ILRLLQVGMEFFELPETEKEAVAKPEDSLDIEGYRTKYQKD 93
>At2g37790 putative alcohol dehydrogenase
Length = 350
Score = 26.2 bits (56), Expect = 2.9
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 18 MFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSR-GLILTET 76
MF S+L T P ++PEA ++ ++Y +++ P+ + G + IL
Sbjct: 76 MFITSKLWCTYHDPQEVPEALNRTLQDLQLDYVDLYLIHWPVSLKKGSTGFKPENILPTD 135
Query: 77 RGACWGTLHSSFETNECRVGG 97
+ W + S F++ + R G
Sbjct: 136 IPSTWKAMESLFDSGKARAIG 156
>At5g08640 flavonol synthase (FLS) (sp|Q96330)
Length = 336
Score = 25.4 bits (54), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 21 ISRLAETNRAPFDLPEAEAESVA 43
I RL + R F+LP +E ESVA
Sbjct: 82 IRRLQDVGRKFFELPSSEKESVA 104
>At1g55860 ubiquitin-protein ligase 1, putative
Length = 3891
Score = 25.4 bits (54), Expect = 4.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 53 AILNSPLLAEANVPGSRGLILTETRGACWGTLH 85
A L SPLLAEA + R + + R + +G+ H
Sbjct: 2920 AALPSPLLAEAQMLRDRAMSHYQARSSVFGSSH 2952
>At5g20850 RAD51 homolog (AtRAD51)
Length = 342
Score = 24.6 bits (52), Expect = 8.4
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 26 ETNRAPFDLPEAEAESVAGYNVEYARDA 53
ET PF + + +A +A +V+ RDA
Sbjct: 20 ETQHGPFPVEQLQAAGIASVDVKKLRDA 47
>At2g37770 putative aldo/keto reductase
Length = 315
Score = 24.6 bits (52), Expect = 8.4
Identities = 19/84 (22%), Positives = 39/84 (45%), Gaps = 7/84 (8%)
Query: 18 MFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGL----IL 73
+F S+L T+ P D+PEA ++ +EY +++ P + GS G+ +L
Sbjct: 76 LFITSKLWCTDHDPQDVPEALNRTLKDLQLEYVDLYLIHWPARIK---KGSVGIKPENLL 132
Query: 74 TETRGACWGTLHSSFETNECRVGG 97
+ W + + +++ + R G
Sbjct: 133 PVDIPSTWKAMEALYDSGKARAIG 156
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,245,268
Number of Sequences: 26719
Number of extensions: 76333
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 9
length of query: 106
length of database: 11,318,596
effective HSP length: 82
effective length of query: 24
effective length of database: 9,127,638
effective search space: 219063312
effective search space used: 219063312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC144406.8