Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144406.4 - phase: 1 /pseudo
         (322 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Atmg00090 -mitochondrial genome- ribosomal protein S3 (RPS3)          477  e-135
At4g36690 splicing factor like protein                                 35  0.072
At3g23900 unknown protein                                              33  0.16
At4g32850 poly(A) polymerase like protein                              31  0.79
At1g07120 hypothetical protein                                         30  2.3
At1g23600 putative OBP32pep protein                                    29  3.0
At1g59650 unknown protein                                              29  3.9
At5g19480 putative protein                                             28  5.1
At5g12230 unknown protein                                              28  5.1
At4g17210 putative protein                                             28  5.1
At3g57520 imbibition protein homolog                                   28  5.1
At1g67035 putative protein                                             28  5.1

>Atmg00090 -mitochondrial genome- ribosomal protein S3 (RPS3)
          Length = 556

 Score =  477 bits (1228), Expect = e-135
 Identities = 241/286 (84%), Positives = 254/286 (88%), Gaps = 8/286 (2%)

Query: 24  SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
           S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRPRRLK
Sbjct: 24  SEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLK 83

Query: 84  RRDKSRPGKEKGRWW-AFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQ 142
           RR+K+RPGKEKGRWW  FGK GPI CLHSS+  +EERNEVRGR A KRVESIRLDDR+KQ
Sbjct: 84  RREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQ 143

Query: 143 NEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRK 200
           NEIR WPKKKQRYGYHDR PSIKKNLSKSLR+SGA  HPKYAG VNDIAFLIEN DSF+K
Sbjct: 144 NEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDSFKK 203

Query: 201 TKFFKLFF---PRSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFV 257
           TK FKLFF    RSDGPT +L  RTLPAVRPSLN+ VMQYFF  KNQ++FDPVVVLNHFV
Sbjct: 204 TKLFKLFFQNKSRSDGPTSYL--RTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFV 261

Query: 258 APGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAK 303
           APG AEPSTMG  NAQGRSL KRIRSRIAFFVESSTSEKKCLAEAK
Sbjct: 262 APGAAEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEKKCLAEAK 307


>At4g36690 splicing factor like protein
          Length = 573

 Score = 34.7 bits (78), Expect = 0.072
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 77  RRPRRLKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRL 136
           R  R  + RD SR   E+G     G         S ++  + R + RG R  +R  S   
Sbjct: 96  RHHRSSRHRDHSR---ERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRSK 152

Query: 137 DDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGAHP 179
           D  E++   R   K KQR    D +P     L+    V+G  P
Sbjct: 153 DRSERRTRSRSPSKSKQRVSGFDMAPPASAMLAAGAAVTGQVP 195


>At3g23900 unknown protein
          Length = 989

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 23/99 (23%)

Query: 80  RRLKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDR 139
           RR + R KS  GK                  S NK+   R++   RR+G+R  S   + +
Sbjct: 787 RRRRSRSKSVEGKR-----------------SYNKETRSRDKKSKRRSGRRSRSPSSEGK 829

Query: 140 EKQNEIRIWP----KKKQRYGYHDRSPSI-KKNLSKSLR 173
           + + +IR  P    +KK R+  H RS SI KKN S+  R
Sbjct: 830 QGR-DIRSSPGYSDEKKSRHKRHSRSRSIEKKNSSRDKR 867



 Score = 32.0 bits (71), Expect = 0.46
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 113 NKKDEERN--EVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSK 170
           NK DE+RN    R R   K VE  R  ++E ++  +   K K+R G   RSPS +    +
Sbjct: 776 NKLDEDRNTGSRRRRSRSKSVEGKRSYNKETRSRDK---KSKRRSGRRSRSPSSEGKQGR 832

Query: 171 SLRVS 175
            +R S
Sbjct: 833 DIRSS 837


>At4g32850 poly(A) polymerase like protein
          Length = 741

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 25/101 (24%), Positives = 42/101 (40%), Gaps = 6/101 (5%)

Query: 34  QDVNLRSYFGSIRPPARLTFGFRLGRCILI-HFPKRTFIHFFLP---RRPRRLKRRDKSR 89
           Q  ++R      R    +   ++ G  + + H  +R    F  P   RRPR+   R ++ 
Sbjct: 452 QQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQ--SRHQNL 509

Query: 90  PGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKR 130
           PG + G   +    G +   H+  K D E  +VR  +  KR
Sbjct: 510 PGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKR 550


>At1g07120 hypothetical protein
          Length = 392

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 112 SNKKDEERNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRY------GYHDRSPSIK 165
           ++K ++E +E+R   A  R +   L   E + +  +W K +  Y      G + ++P   
Sbjct: 25  NDKLEKENHELRQEVARLRAQVSNLKSHENERKSMLWKKLQSSYDGSNTDGSNLKAPESV 84

Query: 166 KNLSKSLRVSGAHPK 180
           K+ +K   V   +PK
Sbjct: 85  KSNTKGQEVRNPNPK 99


>At1g23600 putative OBP32pep protein
          Length = 270

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 11/59 (18%), Positives = 31/59 (51%)

Query: 114 KKDEERNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKSL 172
           K + +R+E     +   +++   +D E+  ++ +W   ++++ ++D  P +K  + K L
Sbjct: 20  KGESKRSENVKSNSNTDMDTNNTEDDEEIKQLNLWSDAEKKHPWYDPPPKVKVTMKKGL 78


>At1g59650 unknown protein
          Length = 492

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 33/123 (26%), Positives = 47/123 (37%), Gaps = 8/123 (6%)

Query: 197 SFRKTKFFKLFFPRSDG-PTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNH 255
           S RK    KL F   +G PTG LF  T+   RP     V    FC   +  FD   +   
Sbjct: 185 STRKKAAVKLSFKWREGHPTGPLFSTTMQLQRPMAGSQVP---FCPLEKKMFDSWSI--- 238

Query: 256 FVAPGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKVAIPSVVCKPP 315
            + PG     +      + + L     +   F V+   S++K    A+ V +P V   P 
Sbjct: 239 -IEPGSFRVRSKTYFRDKKKELAPNYAAYNPFGVDVFLSQRKVNHIAQYVELPVVTTTPT 297

Query: 316 LHP 318
             P
Sbjct: 298 KLP 300


>At5g19480 putative protein
          Length = 207

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 110 HSSNKKDEERNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDR 160
           H  +K  +E++    +   K  + I+  D++K  +     KKK++ G+HD+
Sbjct: 130 HRKHKDKKEKDREHKKHKHKHKDRIKDKDKDKDRD-----KKKEKSGHHDK 175


>At5g12230 unknown protein
          Length = 221

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 16/62 (25%), Positives = 29/62 (45%), Gaps = 3/62 (4%)

Query: 115 KDEERNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRV 174
           KD ++++ R  +  K     R  D++K  +     +KK + G+HD     KK+  K  + 
Sbjct: 133 KDRDKDKDREHKKHKHKHKDRSKDKDKDKDR---DRKKDKNGHHDSGDHSKKHHDKKRKH 189

Query: 175 SG 176
            G
Sbjct: 190 DG 191


>At4g17210 putative protein
          Length = 527

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 27/124 (21%), Positives = 50/124 (39%), Gaps = 22/124 (17%)

Query: 77  RRPRRLKRRDKSRPGKEKGRWW-AFGKVGPIGCLHSSNKKDEER-----NEVRGRRA--- 127
           R  R LK ++K R   E+G W  A  KV  I       +K+ E      +E+R   A   
Sbjct: 329 RENRELKGKEKERQEAEEGEWVEASRKVDEIMREAEKTRKEAEEMRMNVDELRREAAAKH 388

Query: 128 -------------GKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRV 174
                        G+ VE  +  ++    ++++  +KK+   + +    I+ +L +   +
Sbjct: 389 MVMGEAVKQLEIVGRAVEKAKTAEKRAVEDMKVLTEKKESLTHDEPDKKIRISLKEYEEL 448

Query: 175 SGAH 178
            G H
Sbjct: 449 RGKH 452


>At3g57520 imbibition protein homolog
          Length = 773

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 22/85 (25%), Positives = 36/85 (41%), Gaps = 5/85 (5%)

Query: 66  PKRTFIHFFLPRRPRR-LKRRDKSRPGKEKGRWWAFGK----VGPIGCLHSSNKKDEERN 120
           P  + +   LP RP R     D +R G    + W   K    VG   C  +   K+ ++N
Sbjct: 524 PDGSVLRAKLPGRPTRDCLFADPARDGISLLKIWNMNKFTGIVGVFNCQGAGWCKETKKN 583

Query: 121 EVRGRRAGKRVESIRLDDREKQNEI 145
           ++     G    SIR DD +  +++
Sbjct: 584 QIHDTSPGTLTGSIRADDADLISQV 608


>At1g67035 putative protein
          Length = 229

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/35 (34%), Positives = 20/35 (56%)

Query: 141 KQNEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVS 175
           ++ EIR+ P+KK R+G++        + S SL  S
Sbjct: 76  REEEIRVLPEKKTRFGFNPNQRKTSSSSSSSLAQS 110


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,788,350
Number of Sequences: 26719
Number of extensions: 339592
Number of successful extensions: 887
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 13
length of query: 322
length of database: 11,318,596
effective HSP length: 99
effective length of query: 223
effective length of database: 8,673,415
effective search space: 1934171545
effective search space used: 1934171545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)


Medicago: description of AC144406.4