BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144345.16 + phase: 0 /pseudo/partial
         (221 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g64100 hypothetical protein                                         28  2.9
At2g25490 putative glucose regulated repressor protein                 27  6.5
At5g05660 putative protein                                             27  8.5

>At1g64100 hypothetical protein
          Length = 806

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%)

Query: 62  RKPSGMELLCLRKLNLLQVRRRGMVMDTTRRKKLKWGWCQLEQVN 106
           R   GM+LL        ++ RRG+V +TT    L  G+C+++ +N
Sbjct: 447 RVDEGMQLL-------REISRRGLVANTTTYNTLIHGFCEVDNLN 484


>At2g25490 putative glucose regulated repressor protein
          Length = 628

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 12/67 (17%)

Query: 164 RFNNNNKISKLGLLSLRYRCYMLSCFQLYS------------REGIVQLDRASLHLIRCL 211
           R +N+ K+S LGL S+   C  L    L++             EG  QL++  L+    +
Sbjct: 157 RGSNSAKVSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTI 216

Query: 212 QGSGLIS 218
              GL++
Sbjct: 217 TDKGLVA 223


>At5g05660 putative protein
          Length = 820

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 15/42 (35%), Positives = 19/42 (44%), Gaps = 2/42 (4%)

Query: 117 LKCLRH--THICRILSIRSSHRFIISTLCRRASLKCPSMRLP 156
           L C  H  ++ C  L IRSS     S  C +  L+C   R P
Sbjct: 511 LPCGNHYCSYFCHALDIRSSSLDKRSESCEKCDLRCQKERTP 552


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.343    0.149    0.500 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,495,916
Number of Sequences: 26719
Number of extensions: 162537
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 3
length of query: 221
length of database: 11,318,596
effective HSP length: 95
effective length of query: 126
effective length of database: 8,780,291
effective search space: 1106316666
effective search space used: 1106316666
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 58 (26.9 bits)