Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144345.11 - phase: 0 
         (339 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g59970 predicted GPI-anchored protein                              134  9e-32
At1g70170 predicted GPI-anchored protein                              128  4e-30
At1g24140 metalloproteinase like protein, predicted GPI-anchor        119  2e-27
At4g16640 proteinase-like protein, predicted GPI-anchored protei...   112  2e-25
At2g45040 metalloproteinase like protein ,predicted GPI-anchored...   111  6e-25
At1g75940 ATA27                                                        35  0.059
At3g60120 beta-glucosidase-like protein                                33  0.22
At4g24580 putative protein                                             32  0.38
At4g23080 putative protein                                             32  0.50
At5g24550 beta-glucosidase                                             31  1.1
At5g24540 beta-glucosidase                                             30  1.4
At3g60140 beta-glucosidase                                             30  2.5
At2g44470 beta-glucosidase like protein                                30  2.5
At1g61980 unknown protein                                              29  3.2
At1g35420 unknown protein                                              29  3.2
At2g44460 putative beta-glucosidase                                    29  4.2
At1g22280 protein phosphatase type 2C like protein                     29  4.2
At4g10220 putative protein                                             28  5.5
At1g52400 beta-glucosidase, putative                                   28  7.2
At5g45140 DNA-directed RNA polymerase subunit                          28  9.3

>At1g59970 predicted GPI-anchored protein
          Length = 360

 Score =  134 bits (336), Expect = 9e-32
 Identities = 111/329 (33%), Positives = 156/329 (46%), Gaps = 75/329 (22%)

Query: 3   IQGLSQIKKHLSTFGYFR---QFLLKFDDVLDEETISAIKTYQQFFNLQVTGNLNTETLQ 59
           I GLS++K++   FGY          FDDVL     SAI TYQ+ FNL+VTG L++ TL+
Sbjct: 57  INGLSKLKQYFRRFGYITTTGNCTDDFDDVLQ----SAINTYQKNFNLKVTGKLDSSTLR 112

Query: 60  KISLPRCGIPDMRYEYGFDVGSDVSFPKGNKWFPKGTKKLTYGFLPGKKFSLLRCGIPDM 119
           +I  PRCG PD+           VS   G K   + T+K  Y F PGK            
Sbjct: 113 QIVKPRCGNPDLI--------DGVSEMNGGKIL-RTTEK--YSFFPGKP----------- 150

Query: 120 RYEYGFDVGSDVSFPKGNKWFPKGTKKLTYGFLPGKKFSLDMIEGFRNAFTRWSQTTRVL 179
                             +W PK  + LTY F P    + ++   F  AFTRW++ T  L
Sbjct: 151 ------------------RW-PKRKRDLTYAFAPQNNLTDEVKRVFSRAFTRWAEVTP-L 190

Query: 180 NFSETTSYDDADIKIGFYHIYNNDIVDDVVVGDSFISRNLDSNVKSGMIRLERSKFW--- 236
           NF+ + S   ADI IGF+   + +  D      +  +    S+  +GM+ L+  + W   
Sbjct: 191 NFTRSESILRADIVIGFF---SGEHGDGEPFDGAMGTLAHASSPPTGMLHLDGDEDWLIS 247

Query: 237 -------VSPTTTYFKKWELQEFDLETVVMHQIGHLLGLDHSSDKESIMYPLIDPLQEKK 289
                  + P TT          DLE+V +H+IGHLLGL HSS +++IM+P I    ++K
Sbjct: 248 NGEISRRILPVTTVV--------DLESVAVHEIGHLLGLGHSSVEDAIMFPAISG-GDRK 298

Query: 290 VQITDSDNQAIQQLYTNTAKANPNSDHSG 318
           V++   D + IQ LY      NPN D  G
Sbjct: 299 VELAKDDIEGIQHLY----GGNPNGDGGG 323


>At1g70170 predicted GPI-anchored protein
          Length = 378

 Score =  128 bits (322), Expect = 4e-30
 Identities = 105/313 (33%), Positives = 149/313 (47%), Gaps = 42/313 (13%)

Query: 3   IQGLSQIKKHLSTFGYFRQ-FLLKFDDVLDEETISAIKTYQQFFNLQVTGNLNTETLQKI 61
           + GL +IKK+   FGY  + F   F D  D+   +A++ YQ  FNL VTG L+  T+Q I
Sbjct: 56  VDGLYRIKKYFQRFGYIPETFSGNFTDDFDDILKAAVELYQTNFNLNVTGELDALTIQHI 115

Query: 62  SLPRCGIPDMRYEYGFDVGSDVSFPKGNKWFPKGTKKLTYGFLPGKKFSLLRCGIPDMRY 121
            +PRCG PD+        G+ +      K F     +     +  K+++L          
Sbjct: 116 VIPRCGNPDVVN------GTSLMHGGRRKTFEVNFSRTHLHAV--KRYTL---------- 157

Query: 122 EYGFDVGSDVSFPKGNKWFPKGTKKLTYGFLPGKKFSLDMIEGFRNAFTRWSQTTRVLNF 181
                      FP   +W P+  + LTY F P    + ++   F  AF RWS  T  LNF
Sbjct: 158 -----------FPGEPRW-PRNRRDLTYAFDPKNPLTEEVKSVFSRAFGRWSDVT-ALNF 204

Query: 182 SETTSYDDADIKIGFYHIYNNDIVD-DVVVGDSFISRNLDSNVKSGMIRLERSKFWVSPT 240
           + + S+  +DI IGFY   + D    D V+G    +     +  SG   L+  + WV   
Sbjct: 205 TLSESFSTSDITIGFYTGDHGDGEPFDGVLGTLAHA----FSPPSGKFHLDADENWVVSG 260

Query: 241 TTYFKKWELQEFDLETVVMHQIGHLLGLDHSSDKESIMYPLIDPLQEKKVQITDSDNQAI 300
                       DLE+V +H+IGHLLGL HSS +ESIMYP I    ++KV +T+ D + I
Sbjct: 261 DLDSFLSVTAAVDLESVAVHEIGHLLGLGHSSVEESIMYPTI-TTGKRKVDLTNDDVEGI 319

Query: 301 QQLYTNTAKANPN 313
           Q LY     ANPN
Sbjct: 320 QYLY----GANPN 328


>At1g24140 metalloproteinase like protein, predicted GPI-anchor
          Length = 384

 Score =  119 bits (299), Expect = 2e-27
 Identities = 102/324 (31%), Positives = 147/324 (44%), Gaps = 51/324 (15%)

Query: 2   KIQGLSQIKKHLSTFGYFRQFLLK--FDDVLDEETISAIKTYQQFFNLQVTGNLNTETLQ 59
           K  GL  +K++   FGY  +  L   F D  D+   +A++ YQ+ F L VTG L+  TL+
Sbjct: 57  KYDGLYMLKQYFQHFGYITETNLSGNFTDDFDDILKNAVEMYQRNFQLNVTGVLDELTLK 116

Query: 60  KISLPRCGIPDMRYEYGFDVGSDVSFPKGNKWFPKGTKKLTYGFLP-GKKFSLLRCGIPD 118
            + +PRCG PD+                G      G K     F   G++F  ++     
Sbjct: 117 HVVIPRCGNPDV--------------VNGTSTMHSGRKTFEVSFAGRGQRFHAVK----- 157

Query: 119 MRYEYGFDVGSDVSFPKGNKWFPKGTKKLTYGFLPGKKFSLDMIEGFRNAFTRWSQTTRV 178
               Y F       FP   +W P+  + LTY F P    + ++   F  AFTRW + T  
Sbjct: 158 ---HYSF-------FPGEPRW-PRNRRDLTYAFDPRNALTEEVKSVFSRAFTRWEEVTP- 205

Query: 179 LNFSETTSYDDADIKIGFYHIYNNDIVDDVVVGDSFIS--RNLDS--NVKSGMIRLERSK 234
           L F+    +  +DI IGFY   + D       G+ F    R L    +  +G   L+  +
Sbjct: 206 LTFTRVERFSTSDISIGFYSGEHGD-------GEPFDGPMRTLAHAFSPPTGHFHLDGEE 258

Query: 235 FWVSPTTTYFKKWELQE-FDLETVVMHQIGHLLGLDHSSDKESIMYPLIDPLQEKKVQIT 293
            W+           + E  DLE+V +H+IGHLLGL HSS + SIMYP I     +KV +T
Sbjct: 259 NWIVSGEGGDGFISVSEAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTI-RTGRRKVDLT 317

Query: 294 DSDNQAIQQLYTNTAKANPNSDHS 317
             D + +Q LY     ANPN + S
Sbjct: 318 TDDVEGVQYLY----GANPNFNGS 337


>At4g16640 proteinase-like protein, predicted GPI-anchored protein
           (by homology)
          Length = 364

 Score =  112 bits (281), Expect = 2e-25
 Identities = 99/320 (30%), Positives = 138/320 (42%), Gaps = 66/320 (20%)

Query: 3   IQGLSQIKKHLSTFGYFRQFLLKFDDVLDEETISAIKTYQQFFNLQVTGNLNTETLQKIS 62
           + G+S++K++L  FGY       F DV D    SAI  YQ+   L +TG L+T T+  +S
Sbjct: 67  VSGVSELKRYLHRFGYVNDGSEIFSDVFDGPLESAISLYQENLGLPITGRLDTSTVTLMS 126

Query: 63  LPRCGIPDMRYEYGFDVGSDVSFPKGNKWFPKGTKKLTYGFLPGKKFSLLRCGIPDMRYE 122
           LPRCG+ D       D             F   T   TY    GK               
Sbjct: 127 LPRCGVSDTHMTINND-------------FLHTTAHYTY--FNGK--------------- 156

Query: 123 YGFDVGSDVSFPKGNKWFPKGTKKLTYGFLPGKKF----SLDMIEGFRNAFTRWSQTTRV 178
                      PK N+        LTY      K     S D+   FR AF++WS    V
Sbjct: 157 -----------PKWNR------DTLTYAISKTHKLDYLTSEDVKTVFRRAFSQWSSVIPV 199

Query: 179 LNFSETTSYDDADIKIGFYHIYNND-IVDDVVVGD---SFISRNLDSNVKSGMIRLERSK 234
            +F E   +  AD+KIGFY   + D +  D V+G    +F   N       G + L+ ++
Sbjct: 200 -SFEEVDDFTTADLKIGFYAGDHGDGLPFDGVLGTLAHAFAPEN-------GRLHLDAAE 251

Query: 235 FWVSPTTTYFKKWELQEFDLETVVMHQIGHLLGLDHSSDKESIMYPLIDPLQEKKVQITD 294
            W+       K       DLE+V  H+IGHLLGL HSS + ++MYP + P + KKV +T 
Sbjct: 252 TWIVDDD--LKGSSEVAVDLESVATHEIGHLLGLGHSSQESAVMYPSLRP-RTKKVDLTV 308

Query: 295 SDNQAIQQLYTNTAKANPNS 314
            D   + +LY    K   +S
Sbjct: 309 DDVAGVLKLYGPNPKLRLDS 328


>At2g45040 metalloproteinase like protein ,predicted GPI-anchored
           protein (by homology)
          Length = 342

 Score =  111 bits (277), Expect = 6e-25
 Identities = 102/316 (32%), Positives = 144/316 (45%), Gaps = 73/316 (23%)

Query: 6   LSQIKKHLSTFGYFRQFLLKFDDVLDEETISAIKTYQQFFNLQVTGNLNTETLQKISLPR 65
           + +IK+HL  +GY  Q   + DDV  E+   A+  YQ+   L +TG  +++TL +I LPR
Sbjct: 50  IPEIKRHLQQYGYLPQNK-ESDDVSFEQ---ALVRYQKNLGLPITGKPDSDTLSQILLPR 105

Query: 66  CGIPDMRYEYGFDVGSDVSFPKGNKWFPKGTKKLTYGFLPGKKFSLLRCGIPDMRYEYGF 125
           CG PD           DV         PK     T  F  GKK+                
Sbjct: 106 CGFPD-----------DVE--------PK-----TAPFHTGKKY---------------- 125

Query: 126 DVGSDVSFPKGNKWFPKGTKKLTYGF----LPGKKFSLDMIEGFRNAFTRWSQTTRVLNF 181
                V FP   +W      KLTY F    L       D+   FR AF +W+    V +F
Sbjct: 126 -----VYFPGRPRWTRDVPLKLTYAFSQENLTPYLAPTDIRRVFRRAFGKWASVIPV-SF 179

Query: 182 SETTSYDDADIKIGFYHIYNND--IVDDV--VVGDSFISRNLDSNVKSGMIRLERSKFWV 237
            ET  Y  ADIKIGF++  + D    D V  V+  +F   N       G + L++++ W 
Sbjct: 180 IETEDYVIADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPEN-------GRLHLDKAETWA 232

Query: 238 SPTTTYFKKWELQEFDLETVVMHQIGHLLGLDHSSDKESIMYPLIDPLQEKKVQITDSDN 297
                + ++      DLE+V +H+IGH+LGL HSS K++ MYP + P + KKV +   D 
Sbjct: 233 ---VDFDEEKSSVAVDLESVAVHEIGHVLGLGHSSVKDAAMYPTLKP-RSKKVNLNMDDV 288

Query: 298 QAIQQLYTNTAKANPN 313
             +Q LY      NPN
Sbjct: 289 VGVQSLY----GTNPN 300


>At1g75940 ATA27
          Length = 535

 Score = 35.0 bits (79), Expect = 0.059
 Identities = 25/80 (31%), Positives = 36/80 (44%), Gaps = 15/80 (18%)

Query: 129 SDVSFPKGNKWFPKGTKKLTYGFLPGKKFSLDMIEGFRNAFTR----WSQTTRVLNFSET 184
           +D+ F + N  FPKG       F+ G   +   +EG  N   R    W   T+   F   
Sbjct: 33  TDIHFTRAN--FPKG-------FIFGTATAAFQVEGAVNEGCRGPSMWDVYTK--KFPHK 81

Query: 185 TSYDDADIKIGFYHIYNNDI 204
            +Y +AD+ + FYH Y  DI
Sbjct: 82  CNYHNADVAVDFYHRYKEDI 101


>At3g60120 beta-glucosidase-like protein
          Length = 534

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 23/64 (35%), Positives = 27/64 (41%), Gaps = 2/64 (3%)

Query: 143 GTKKLTYGFLPGKKFSLDMIEGFRNAFTRWSQT--TRVLNFSETTSYDDADIKIGFYHIY 200
           G      GFL G   S    EG RN   R      T V  + E   Y +AD  I FY+ Y
Sbjct: 9   GRSDFPEGFLFGTASSAYQYEGARNEAPRGESVWDTFVRKYPERNCYSNADQAIEFYNHY 68

Query: 201 NNDI 204
            +DI
Sbjct: 69  KDDI 72


>At4g24580 putative protein
          Length = 790

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 43/189 (22%), Positives = 77/189 (39%), Gaps = 25/189 (13%)

Query: 126 DVGSDVSFPKGNKWFPKGTKKLTYGFLPGKKFSLDMIEGFRNAFTRWSQTTRVLNFSETT 185
           DV SD   P      P G+K+  +G  PGKK                + +   ++FS   
Sbjct: 481 DVASDTQKPSKLSDAPGGSKR-HWGRTPGKK----------------NLSMESIDFSVEV 523

Query: 186 SYDDADI-KIGFYHIYNNDIVDDVVVGDSFISRNLDSNVKSGMIR-------LERSKFWV 237
             D+ADI ++    +     + + V  ++ +  +L+   K+   R       L++    V
Sbjct: 524 DEDNADIERLESTKLELQSRITEEVKSNAVLQASLERRKKALYGRRQALEQDLKKDLQEV 583

Query: 238 SPTTTYFKKWELQEFDLETVVMHQIGHLLGLDHSSDKESIMYPLIDPLQEKKVQITDSDN 297
           +       K E +  DLE  + H  G   G  HS+ KES   P  +   ++K + T++ +
Sbjct: 584 AQAEADIAKLEHKVDDLENRLGHHDGKASGSTHSASKESRKLPEHNAKMKEKQKDTEAAS 643

Query: 298 QAIQQLYTN 306
             I +  T+
Sbjct: 644 THISERSTS 652


>At4g23080 putative protein
          Length = 244

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 32/113 (28%), Positives = 42/113 (36%), Gaps = 24/113 (21%)

Query: 88  GNKWFPKGTKKL--TYGFLPGKKFSLLRCGIPDMRYEYGFDVGS--DVSFPKGNKWFPKG 143
           GN W   GT  L    G  P K+F            E+G +V S    S P GN  +PKG
Sbjct: 127 GNWWLLMGTGILWEKIGVWPAKRFKESF----GTEIEWGGEVHSPSSPSPPMGNSHYPKG 182

Query: 144 TKKLTYGFLPGKKFSLDMIEGFRNAFTRWSQTTRVLNFSETTS-YDDADIKIG 195
           T +L               + +    T W +     NF + T  Y D   K+G
Sbjct: 183 TPRL---------------DSYVRLITTWDENYNADNFVKNTERYSDGCYKVG 220


>At5g24550 beta-glucosidase
          Length = 531

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 172 WSQTTRVLNFSETTSYDDADIKIGFYHIYNNDI 204
           W   T    F E T+ D+ D+ + FYH Y +DI
Sbjct: 66  WDNFTHA--FPERTNMDNGDVAVDFYHRYKDDI 96


>At5g24540 beta-glucosidase
          Length = 534

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 172 WSQTTRVLNFSETTSYDDADIKIGFYHIYNNDI 204
           W   T    F E T+ D+ D+ + FYH Y  DI
Sbjct: 66  WDNFTHA--FPERTNMDNGDVAVDFYHRYKEDI 96


>At3g60140 beta-glucosidase
          Length = 577

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 179 LNFSETTSYDDADIKIGFYHIYNNDI 204
           L + E T   +AD+ I FYH Y +DI
Sbjct: 65  LTYPERTKMHNADVAIDFYHRYKDDI 90


>At2g44470 beta-glucosidase like protein
          Length = 451

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 11/24 (45%), Positives = 16/24 (65%)

Query: 181 FSETTSYDDADIKIGFYHIYNNDI 204
           F E T+  +AD+ + FYH Y +DI
Sbjct: 70  FPERTNMQNADVAVDFYHRYKDDI 93


>At1g61980 unknown protein
          Length = 418

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 215 ISRNLDSNVKSGMIRLERSKFWVSPTTTYFKKWELQEFDLETVVMHQIGHLLGLDHSSDK 274
           + R  D N++  +   +R  F V    T FK+W       E  +++ I   LGL  S D+
Sbjct: 249 VQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPNFLTHSEKKILNTIETFLGLGFSRDE 308

Query: 275 ESIM 278
            S++
Sbjct: 309 FSVL 312


>At1g35420 unknown protein
          Length = 310

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 23/102 (22%), Positives = 45/102 (43%), Gaps = 5/102 (4%)

Query: 154 GKKFSLDMIEGFRNAFTRWSQTTRVLNFSETTSYDDADIKIGFYHIYNND---IVDDVVV 210
           G + S+D +EG+     + +  T +L  S+   + D+  +   Y +  N    +V D+  
Sbjct: 87  GTEVSVDGVEGYLLTAVKNNNGTGLLLLSDVFGFQDSATRDFAYRVACNGYNVLVPDLFR 146

Query: 211 GDSFISRNLDSNVKSGMIRLERSKFWVSPTTTYFKKWELQEF 252
           GD +      S  +      + ++  +   TT F KW ++EF
Sbjct: 147 GDPWSKNRPKSEYEEWRRGHDPNR--IRQDTTTFTKWMVEEF 186


>At2g44460 putative beta-glucosidase
          Length = 577

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (61%)

Query: 181 FSETTSYDDADIKIGFYHIYNNDI 204
           F E T   +AD+ + FYH Y +DI
Sbjct: 70  FPERTRMQNADVAVDFYHRYKDDI 93


>At1g22280 protein phosphatase type 2C like protein
          Length = 281

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 9/58 (15%)

Query: 191 DIKIGFYHIYNNDIVDDVVVGDSFISRNLDSNVKSGMIRLERSKFWVSPTTTYFKKWE 248
           D ++G + IY+  + D V    +++ + L SN+      L+  +FWV P  +  K +E
Sbjct: 60  DHELGLFAIYDGHMGDSV---PAYLQKRLFSNI------LKEGEFWVDPRRSIAKAYE 108


>At4g10220 putative protein
          Length = 246

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 88  GNKWFPKGTKKLTYGFLPGKKFSLLRCGIPDMRYEYGFDV--GSDVSFPKGNKWFPKGTK 145
           GN W   GT     GF P  +F            E+G +V   S  + P GN  +PKG+ 
Sbjct: 133 GNWWLLMGTSWEEVGFWPSSRFK----ESSGTMVEWGGEVYSPSPPNPPMGNSHYPKGSP 188

Query: 146 KL 147
           K+
Sbjct: 189 KV 190


>At1g52400 beta-glucosidase, putative
          Length = 528

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 6/59 (10%)

Query: 150 GFLPGKKFSLDMIEGFRNAFTR----WSQTTRVLNFSETTSYDDADIKIGFYHIYNNDI 204
           GF+ G   +   +EG  N   R    W   T+   F       +AD+ + FYH Y  DI
Sbjct: 47  GFIWGTATAAFQVEGAVNEGCRGPSMWDTFTK--KFPHRCENHNADVAVDFYHRYKEDI 103


>At5g45140 DNA-directed RNA polymerase subunit
          Length = 1194

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 20/77 (25%), Positives = 37/77 (47%), Gaps = 6/77 (7%)

Query: 1   MKIQGLSQIKKHLSTFGYFRQFLLKFDDVLDEETISAI--KTYQQFFNLQV--TGNLNTE 56
           +K++GL  +K+HL +F YF    +      +    S +    Y +F  ++V     +N  
Sbjct: 61  LKVRGL--VKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGEPSIINVN 118

Query: 57  TLQKISLPRCGIPDMRY 73
           T++ I+   C + DM Y
Sbjct: 119 TVENINPHMCRLADMTY 135


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,009,381
Number of Sequences: 26719
Number of extensions: 362880
Number of successful extensions: 819
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 31
length of query: 339
length of database: 11,318,596
effective HSP length: 100
effective length of query: 239
effective length of database: 8,646,696
effective search space: 2066560344
effective search space used: 2066560344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)


Medicago: description of AC144345.11