BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC143341.10 + phase: 0 
         (633 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g03270 helicase like protein                                      1022  0.0
At5g35970 DNA helicase-like                                           347  1e-95
At5g47010 UPF1                                                        216  4e-56
At1g08840 hypothetical protein,5' partial                             186  4e-47
At4g15570 SEN1 like protein                                           169  4e-42
At1g05460 unknown protein                                             150  2e-36
At1g16800 hypothetical protein                                        141  1e-33
At5g37030 SEN1-like protein                                           135  5e-32
At2g19120 putative DNA2-NAM7 helicase family protein                  134  1e-31
At1g65780 hypothetical protein                                        134  1e-31
At4g30100 putative protein                                            131  1e-30
At5g52090 putative protein                                            124  1e-28
At5g37150 sen1-like protein                                           124  2e-28
At5g37140 sen1-like protein                                           120  2e-27
At4g05540                                                             118  1e-26
At5g37160 sen1-like protein                                           110  2e-24
At1g65810 hypothetical protein                                        109  4e-24
At2g38770 unknown protein                                              74  2e-13
At1g48650 hypothetical protein                                         41  0.002
At1g06670 DEIH-box RNA/DNA helicase                                    37  0.034

>At2g03270 helicase like protein
          Length = 639

 Score = 1022 bits (2643), Expect = 0.0
 Identities = 519/628 (82%), Positives = 575/628 (90%), Gaps = 1/628 (0%)

Query: 6   SFMILLFFFHQDAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIELQST 65
           S M  L    ++AEIS S+ +GASRN++TAQK+G+TILNLKCVDVQTGLMGKSLIE QS 
Sbjct: 12  STMAPLIDMEKEAEISMSLTSGASRNIETAQKKGTTILNLKCVDVQTGLMGKSLIEFQSN 71

Query: 66  KADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLR 125
           K DVLPAHKFG HDVVVLKLNK+DLGS  L QGVVYRLKDSSITV FD++PE+GLN+ LR
Sbjct: 72  KGDVLPAHKFGNHDVVVLKLNKSDLGSSPLAQGVVYRLKDSSITVVFDEVPEEGLNTSLR 131

Query: 126 LEKVANEVTYHRMKDALIQLSKGVHKGPASDLIPVLFGERQPTVSKKDVV-FTSINKNLD 184
           LEK+ANEVTY RMKD LIQLSKGV +GPASDL+PVLFGERQP+VSKKDV  FT  NKNLD
Sbjct: 132 LEKLANEVTYRRMKDTLIQLSKGVLRGPASDLVPVLFGERQPSVSKKDVKSFTPFNKNLD 191

Query: 185 YSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVE 244
            SQKDAI+KALSSK+VFLLHGPPGTGKTTTVVEI+LQEVKRGSKILACAASNIAVDNIVE
Sbjct: 192 QSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKILACAASNIAVDNIVE 251

Query: 245 RLVPHRVKLVRIGHPARLLPQVVDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEK 304
           RLVPH+VKLVR+GHPARLLPQV+DSALDAQVL+GDNSGLANDIRKEMK LNGKLLK K+K
Sbjct: 252 RLVPHKVKLVRVGHPARLLPQVLDSALDAQVLKGDNSGLANDIRKEMKALNGKLLKAKDK 311

Query: 305 NTRREIQKELRTLSREERKRQQLAVTDVIKTSDVILTTLIGASSKKLGNTSFDLVIIDEA 364
           NTRR IQKELRTL +EERKRQQLAV+DVIK +DVILTTL GA ++KL N +FDLVIIDE 
Sbjct: 312 NTRRLIQKELRTLGKEERKRQQLAVSDVIKNADVILTTLTGALTRKLDNRTFDLVIIDEG 371

Query: 365 AQALEVACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSM 424
           AQALEVACWI LLKG+RCILAGDHLQLPPTIQS EAE+KGLGRTLFERLA+LYGDE+ SM
Sbjct: 372 AQALEVACWIALLKGSRCILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYGDEIKSM 431

Query: 425 LTVQYRMHQLIMDWSSKELYNSKVKAHACVASHMLYDLEGVKKTSSTEPTLLLIDTAGCD 484
           LTVQYRMH+LIM+WSSKELY++K+ AH+ VASHML+DLE V K+SSTE TLLL+DTAGCD
Sbjct: 432 LTVQYRMHELIMNWSSKELYDNKITAHSSVASHMLFDLENVTKSSSTEATLLLVDTAGCD 491

Query: 485 MEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSL 544
           MEEKKDEE+ST NEGE+EVAMAHAKRL++SGV PSDIGIITPYAAQV+LL++L+ KE  L
Sbjct: 492 MEEKKDEEESTYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKL 551

Query: 545 KDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTET 604
           KD+EISTVDGFQGREKEAIIISMVRSNSKKEVGFL D+RRMNVAVTR+RRQCCIVCDTET
Sbjct: 552 KDMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCDTET 611

Query: 605 VSSDGFLKRLIEYFEEHGEYQSASEYQN 632
           VSSD FLKR+IEYFEEHGEY SASEY N
Sbjct: 612 VSSDAFLKRMIEYFEEHGEYLSASEYTN 639


>At5g35970 DNA helicase-like
          Length = 750

 Score =  347 bits (890), Expect = 1e-95
 Identities = 227/636 (35%), Positives = 350/636 (54%), Gaps = 43/636 (6%)

Query: 30  RNLDTAQKRGSTILNLKCVDVQTGLMGKSLIELQSTKADVLPAHKFGTHDVVVLKL-NKA 88
           R+ D  Q+   TI NL  V   TGL G  L+  +      LP       D+V +++ +  
Sbjct: 100 RHGDAPQELCDTICNLYAVSTSTGLGGMHLVLFKVGGNHRLPPTTLSPGDMVCIRVCDSR 159

Query: 89  DLGSPALGQGVVYRLKDS--SITVAFDDIPEDGLNSPL--------RLEKVANEVTYHRM 138
             G+ A  QG V+ L +   SI VA +    D   S L        R+  +A+ +TY R 
Sbjct: 160 GAGATACTQGFVHNLGEDGCSIGVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERN 219

Query: 139 KDALIQLSKG--VHKGPASDLIPVLFGERQPTV----------SKKDVVFTSINKNLDYS 186
            +AL+ L K     K P+  ++  LFG+ +             S+ ++    ++K  D S
Sbjct: 220 CEALMLLQKNGLQKKNPSISVVATLFGDGEDITWLEQNDYVDWSEAELSDEPVSKLFDSS 279

Query: 187 QKDAISKALSSKN-VFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 245
           Q+ AI+  ++ K  V ++ GPPGTGKT  + E+I   V++G ++L  A +N AVDN+VE+
Sbjct: 280 QRRAIALGVNKKRPVMIVQGPPGTGKTGMLKEVITLAVQQGERVLVTAPTNAAVDNMVEK 339

Query: 246 LVPHRVKLVRIGHPARLLPQVVDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKN 305
           L+   + +VR+G+PAR+   V   +L   V    NS LA+  R E++     L K   + 
Sbjct: 340 LLHLGLNIVRVGNPARISSAVASKSLGEIV----NSKLAS-FRAELERKKSDLRKDLRQC 394

Query: 306 TRRE-----IQKELRTLSREERKRQQLAVTDVIKTSDVILTTLIGASSKKLGNT-SFDLV 359
            R +     I++ L+ L +  +K+++  V +++  + V+  T IGA+   +    +FDLV
Sbjct: 395 LRDDVLAAGIRQLLKQLGKTLKKKEKETVKEILSNAQVVFATNIGAADPLIRRLETFDLV 454

Query: 360 IIDEAAQALEVACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGD 419
           +IDEA Q++E +CWIP+L+G RCIL+GD  QL P + S +A + GLG +L ER A L+  
Sbjct: 455 VIDEAGQSIEPSCWIPILQGKRCILSGDPCQLAPVVLSRKALEGGLGVSLLERAASLHDG 514

Query: 420 EVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVASHMLYDLEGVKKTSSTEPTLLLID 479
            + + LT QYRM+ +I  W+SKE+Y   +K+   VASH+L D   VK T  T+  L+L+D
Sbjct: 515 VLATKLTTQYRMNDVIAGWASKEMYGGWLKSAPSVASHLLIDSPFVKATWITQCPLVLLD 574

Query: 480 T--------AGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQV 531
           T         GC+         S  NEGE+++ + H   L+ +GV P  I + +PY AQV
Sbjct: 575 TRMPYGSLSVGCEERLDPAGTGSLYNEGEADIVVNHVISLIYAGVSPMAIAVQSPYVAQV 634

Query: 532 VLLKMLKNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTR 591
            LL+   +       +E++T+D FQGRE +A+IISMVRSN+   VGFL D RRMNVA+TR
Sbjct: 635 QLLRERLDDFPVADGVEVATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRMNVAITR 694

Query: 592 ARRQCCIVCDTETVSSDGFLKRLIEYFEEHGEYQSA 627
           AR+   +VCD+ T+  + FL RL+ +    G  + A
Sbjct: 695 ARKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 730


>At5g47010 UPF1
          Length = 1254

 Score =  216 bits (549), Expect = 4e-56
 Identities = 147/446 (32%), Positives = 232/446 (51%), Gaps = 26/446 (5%)

Query: 183 LDYSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVDN 241
           L+ SQ +A+ K++  K + L+ GPPGTGKT T   I+    K+G  ++L CA SN+AVD 
Sbjct: 489 LNASQVNAV-KSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 547

Query: 242 IVERLVPHRVKLVRIGHPARLLPQVVDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKT 301
           + E++    +K+VR+   +R   + V S ++   L      L    + E+  L  + LK 
Sbjct: 548 LAEKISATGLKVVRLCAKSR---EAVSSPVEYLTLHYQVRHLDTSEKSELHKL--QQLKD 602

Query: 302 KEKNTRREIQKELRTLSREERKRQQLAVTDVIKTSDVILTTLIGASSKKLGNTSFDLVII 361
           ++       +K+ + L R   +       ++ +++DVI  T +GA+  +L N  F  V+I
Sbjct: 603 EQGELSSSDEKKYKNLKRATER-------EITQSADVICCTCVGAADLRLSNFRFRQVLI 655

Query: 362 DEAAQALEVACWIPLLKGTR-CILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDE 420
           DE+ QA E  C IPL+ G +  +L GDH QL P I   +A + GL ++LFERL  L    
Sbjct: 656 DESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLGIKP 715

Query: 421 VTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVASHMLYDLEGVKKTSSTEPTLLLIDT 480
           +   L VQYRMH  + ++ S   Y   ++    +       ++      +  P    +  
Sbjct: 716 IR--LQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPN-RPMFFYVQL 772

Query: 481 AGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNK 540
                EE      S LN  E+          ++SGV+PS IG+ITPY  Q   +     +
Sbjct: 773 G---QEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMAR 829

Query: 541 ENSL-----KDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQ 595
             SL     K+IE+++VD FQGREK+ II+S VRSN  + +GFL+D RR+NVA+TRAR  
Sbjct: 830 NGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYG 889

Query: 596 CCIVCDTETVSSDGFLKRLIEYFEEH 621
             I+ + + +S       L+ +++EH
Sbjct: 890 IVILGNPKVLSKQPLWNGLLTHYKEH 915


>At1g08840 hypothetical protein,5' partial
          Length = 874

 Score =  186 bits (471), Expect = 4e-47
 Identities = 149/479 (31%), Positives = 231/479 (48%), Gaps = 71/479 (14%)

Query: 156 DLIPVLFGERQPTVSKKDVVFTSINKNLDYSQKDAISKALSSKNVFLLHGPPGTGKTTTV 215
           DL P  F           + +    K+L+  Q+ AI K L++K+  L+ G PGTGKT+T+
Sbjct: 439 DLEPPRFDNGSILSQDPAISYIWSEKSLNNDQRQAILKILTAKDYALILGMPGTGKTSTM 498

Query: 216 VEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQVVDSALDAQV 275
           V  +   + RGS IL  + +N AVDN++ +L    ++ +RIG    +  +V +S   A  
Sbjct: 499 VHAVKALLIRGSSILLASYTNSAVDNLLIKLKAQGIEFLRIGRDEAVHEEVRESCFSAM- 557

Query: 276 LRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKT 335
               N     DI+K++                                       D +K 
Sbjct: 558 ----NMCSVEDIKKKL---------------------------------------DQVK- 573

Query: 336 SDVILTTLIGASSKKLGNTSFDLVIIDEAAQALEVACWIPLLKGTRCILAGDHLQLPPTI 395
             V+ +T +G +S  L N  FD+ IIDEA Q        PLL  +  +L GDH QLPP +
Sbjct: 574 --VVASTCLGINSPLLVNRRFDVCIIDEAGQIALPVSIGPLLFASTFVLVGDHYQLPPLV 631

Query: 396 QSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVA 455
           QS EA + G+G +LF RL+E +  +  S+L  QYRM + IM+ S+  +Y  ++    C  
Sbjct: 632 QSTEARENGMGISLFRRLSEAH-PQAISVLQNQYRMCRGIMELSNALIYGDRL----CCG 686

Query: 456 SHMLYDLEGVKKTSST---------EP--TLLLIDTAGCDMEEKKDEEDSTLNEGESEVA 504
           S  + D   V  TSS+         EP  T++ ++T      E +D +++  N  E+ + 
Sbjct: 687 SAEVADATLVLSTSSSTSPWLKKVLEPTRTVVFVNTDMLRAFEARD-QNAINNPVEASII 745

Query: 505 MAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDIEISTVDGFQGREKEAII 564
               + LV +GV   DIGIITPY +Q  L++           +EI T+D +QGR+K+ I+
Sbjct: 746 AEIVEELVNNGVDSKDIGIITPYNSQASLIQ----HAIPTTPVEIHTIDKYQGRDKDCIL 801

Query: 565 ISMVRSNSK---KEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDGFLKRLIEYFEE 620
           +S VRS  K        L D  R+NVA+TRA+++  +V    T+S    L  L+   +E
Sbjct: 802 VSFVRSREKPRSSASSLLGDWHRINVALTRAKKKLIMVGSQRTLSRVPLLMLLLNKVKE 860


>At4g15570 SEN1 like protein
          Length = 818

 Score =  169 bits (428), Expect = 4e-42
 Identities = 166/528 (31%), Positives = 239/528 (44%), Gaps = 96/528 (18%)

Query: 180 NKNLDYSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEII----------------LQEV 223
           N+NL+ SQK+AI   LS K+  L+ GPPGTGKT T++ I+                  EV
Sbjct: 255 NENLNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSILGAIMHATPARVQSKGTDHEV 314

Query: 224 KRGSKILACAASN--------IAVDNIVERLVPH--------------RVKLVRIGHPAR 261
           KRG ++      N        I   N  + ++P               + ++V      R
Sbjct: 315 KRGIQMTIQEKYNHWGRASPWILGVNPRDAIMPEDGDDGFFPTSGNELKPEVVNASRKYR 374

Query: 262 LLPQVV---DSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLS 318
           L   V    +SALD  VLR  +SGL ++     +    K+++   K         L  L 
Sbjct: 375 LRVLVCAPSNSALDEIVLRLLSSGLRDE---NAQTYTPKIVRIGLKAHHSVASVSLDHLV 431

Query: 319 REER------KRQQLAVTD-------VIKTSDVILTTLIGASSKKL--GNTSFDLVIIDE 363
            ++R       +Q    TD       +++ + ++  TL  + S  L   N  FD+VIIDE
Sbjct: 432 AQKRGSAIDKPKQGTTGTDIDSIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDE 491

Query: 364 AAQALEVACWIPLLKGTRC---ILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDE 420
           AAQA+E A  IPL   TRC    L GD  QLP T+ S  A+  G G ++FERL +     
Sbjct: 492 AAQAVEPATLIPL--ATRCKQVFLVGDPKQLPATVISTVAQDSGYGTSMFERLQK--AGY 547

Query: 421 VTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVASHMLYDLEGVKKTSSTEPTLLLIDT 480
              ML  QYRMH  I  + SK+ Y   ++  + + +    D     K     P       
Sbjct: 548 PVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTRDWH---KYRCFGPFCFF--- 601

Query: 481 AGCDMEEKKDEE-----DSTLNEGESEVAMAHAKRLVQSGVLP-----SDIGIITPYAAQ 530
              D+ E K+ +      S +N  E E  +    RLV   + P     S + II+PY  Q
Sbjct: 602 ---DIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVT--MYPELKSSSQLAIISPYNYQ 656

Query: 531 VVLLKMLKNKENSL------KDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRR 584
           V   K  K++   +      K ++I+TVDGFQGREK+  I S VR+N   ++GFLS+ RR
Sbjct: 657 V---KTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRR 713

Query: 585 MNVAVTRARRQCCIVCDTETVSSDGFLKRLIEYFEEHGEYQSASEYQN 632
           MNV +TRA+    +V    T+ SD   K LIE  E+       S+  N
Sbjct: 714 MNVGITRAKSSVLVVGSAATLKSDPLWKNLIESAEQRNRLFKVSKPLN 761


>At1g05460 unknown protein
          Length = 1002

 Score =  150 bits (379), Expect = 2e-36
 Identities = 142/479 (29%), Positives = 227/479 (46%), Gaps = 62/479 (12%)

Query: 176 FTSINKNLDYSQKDAISKALSSKNV--FLLHGPPGTGKTTTVVEIILQ--EVKRGSKILA 231
           F  I+  L+  Q  +I   L  K    +++HGPPGTGKT T+VE I+Q    +R +++L 
Sbjct: 390 FVPISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLV 449

Query: 232 CAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQVVDSALDAQVLRGDNSGLANDIRKEM 291
           CA SN A D+I+E+L+   ++ VRI               D ++ R       N   +  
Sbjct: 450 CAPSNSAADHILEKLLC--LEGVRIK--------------DNEIFR------LNAATRSY 487

Query: 292 KVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKTSDVILTTLIGASSKKL 351
           + +  ++++    +        L+ L+R +           +  S  +  +L+ A     
Sbjct: 488 EEIKPEIIRFCFFDELIFKCPPLKALTRYK-----------LVVSTYMSASLLNAEGVNR 536

Query: 352 GNTSFDLVIIDEAAQALEVACWIPL----LKGTRCILAGDHLQLPPTIQSVEAEKKGLGR 407
           G+  F  +++DEA QA E    I +    L  T  +LAGD  QL P I S +AE  GLG+
Sbjct: 537 GH--FTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGK 594

Query: 408 TLFERLAE----LYGDE-VTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVASHMLYDL 462
           +  ERL E      GDE   + L   YR H  I+D  SK  Y+ ++ A       +L  L
Sbjct: 595 SYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASL 654

Query: 463 EGVKKTSSTEPTLLLIDTAGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSG-VLPSDI 521
             +    + E  ++     GCD  E++    S  N  E    +   KRL  +  V   DI
Sbjct: 655 NFL---PNKEFPMVFYGIQGCD--EREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDI 709

Query: 522 GIITPYAAQVVLLKMLKNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKKE------ 575
           G+ITPY  QV+ +K + ++ + + ++++ +V+ FQG+EK+ IIIS VRS  K        
Sbjct: 710 GVITPYRQQVMKIKEVLDRLD-MTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAY 768

Query: 576 -VGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDGFLKRLIEYFEEHGEYQSASEYQNE 633
            +GFLS+ RR NVA+TRA     I+ +   +  D    +L+    ++  YQ     + E
Sbjct: 769 CLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEQE 827


>At1g16800 hypothetical protein
          Length = 1939

 Score =  141 bits (355), Expect = 1e-33
 Identities = 119/370 (32%), Positives = 180/370 (48%), Gaps = 72/370 (19%)

Query: 295  NGKLLKTKEKNTR--------REIQKELRTLSREERKR-------QQLAVTDVIKTSDVI 339
            +GKL+   E   R        R+I K+L  +  +ERK        +Q     ++K + ++
Sbjct: 1337 DGKLMSDAELGIRLRRLYEQKRKIYKDLSAVQAQERKANYEMRTLKQKLRKSILKEAQIV 1396

Query: 340  LTTLIGA------------SSKKLGNTS----FDLVIIDEAAQALEVACWIPLL----KG 379
            +TTL G             ++ K G+ S    FD V+IDEAAQALE A  IPL     +G
Sbjct: 1397 VTTLSGCGGDLYSVCAESLAAHKFGSPSEDNLFDAVVIDEAAQALEPATLIPLQLLKSRG 1456

Query: 380  TRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWS 439
            T+CI+ GD  QLP T+ S  A K     ++FERL    G  +  MLT QYRMH  I  + 
Sbjct: 1457 TKCIMVGDPKQLPATVLSNVASKFLYECSMFERLQRA-GYPIL-MLTQQYRMHPEICRFP 1514

Query: 440  SKELYNSKVKAHACVASHMLYDLEGVKKTSSTEP--------TLLLIDTAGCDMEEKKDE 491
            S   Y++K+             L GV  +S + P          +  D      E +  +
Sbjct: 1515 SMHFYDNKL-------------LNGVDMSSKSAPFHENHHLGPYVFYDIVD-GQEHRSGD 1560

Query: 492  EDSTLNEGESEVA---MAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLK--- 545
              S  NE E+E A   +   K+   S  +   IGIITPY  Q+ +L+         +   
Sbjct: 1561 SSSVCNEQEAEAAVQLLRFFKKRYPSEFVAGRIGIITPYKRQLAVLRSRFTGAFGAQVTA 1620

Query: 546  DIEISTVDGFQGREKEAIIISMVRSN-------SKKEVGFLSDRRRMNVAVTRARRQCCI 598
            D+E++TVDGFQG+E + +++S VR+        ++  +GF++D RRMNVA+TRA+    +
Sbjct: 1621 DMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWV 1680

Query: 599  VCDTETVSSD 608
            + +T T+  D
Sbjct: 1681 LGNTRTLQRD 1690



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 21/47 (44%), Positives = 28/47 (58%), Gaps = 6/47 (12%)

Query: 179  INKNLDYSQKDAISKALSSKNVF------LLHGPPGTGKTTTVVEII 219
            +  + + SQ  AIS A+ S N+       L+ GPPGTGKT T+V II
Sbjct: 1099 LKSSFNESQLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRTIVAII 1145


>At5g37030 SEN1-like protein
          Length = 638

 Score =  135 bits (341), Expect = 5e-32
 Identities = 150/521 (28%), Positives = 239/521 (45%), Gaps = 73/521 (14%)

Query: 118 DGLNSPLRLEKVANEVTYHRMKDALIQL-----SKGVHKGPASDLIPVLFGER----QPT 168
           D LN PL L  ++ + TY  +   L +L      K +   P  DLI  +        +P 
Sbjct: 128 DDLN-PLLLGSISVD-TYPNISVILSRLIFHDEKKSLGFAPNFDLIQSVLQPNTAGMEPI 185

Query: 169 VSKK----DVVFTSINKNLDYSQKDAISKALSSKN------VFLLHGPPGTGKTTTVVEI 218
           VS +    +V+    +  L+ SQ+ AI   L +++      V L+ GP    KT TV  +
Sbjct: 186 VSSRTWGQNVLDIIRSSKLNSSQEAAILSCLETRDSNHKNSVKLIWGPL---KTKTVATL 242

Query: 219 ILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQVVDSALDAQVLRG 278
           +L  +K   K + CA +N A+  +  RL+                      AL  +    
Sbjct: 243 LLVLLKLRCKTVVCAPTNTAIVEVTSRLL----------------------ALSNKYSEH 280

Query: 279 DNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKTSDV 338
              GL N         N K ++ K+ +  R +  + R      + R+    T   K S  
Sbjct: 281 ATYGLGNIFLAG----NQKRMRIKDTDYLRNVFLDHRI----SKLRKLFLSTCGWKQSLE 332

Query: 339 ILTTLIGASSKKLGNTSFDLVIIDEAAQALEVACWIPL-LKGTR-CILAGDHLQLPPTIQ 396
            +  L+  +  K GN   +++++DEAAQ  E      L L G R  IL GD  QLP  + 
Sbjct: 333 SIIDLLENTETKTGN--IEVLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVH 390

Query: 397 SVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVAS 456
           + + EK   GR+LFERL  L       +L VQYRMH  I  +  KE Y  ++K  A V  
Sbjct: 391 NDQCEKAKFGRSLFERLVLL--GHKKHLLDVQYRMHPSISRFPYKEFYGGRIKDAANV-Q 447

Query: 457 HMLYDLEGVKKTSSTEPTLLLIDTAGCDMEEKKDEEDSTLNEGESEVA---MAHAKRLVQ 513
             +Y    ++       + + +       +E+  + DS  N  E  V    +++  ++ +
Sbjct: 448 ESIYQKRFLQGNMFGSFSFINVGRG----KEEFGDGDSPKNMVEVAVVSEIISNLFKVSR 503

Query: 514 SGVLPSDIGIITPYAAQV-VLLKMLKNKENSLKD----IEISTVDGFQGREKEAIIISMV 568
              +   +G+ITPY  QV  + + +++K +SL      + + +VDGFQG E++ IIIS V
Sbjct: 504 ERKMKMSVGVITPYKGQVRAIQERIRDKYSSLSGELFTVNVRSVDGFQGGEEDIIIISTV 563

Query: 569 RSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDG 609
           RSNS  +VGFLS+R+R NVA+TRAR    ++ +  T++  G
Sbjct: 564 RSNSNGKVGFLSNRQRANVALTRARHCLWVIGNESTLARSG 604


>At2g19120 putative DNA2-NAM7 helicase family protein
          Length = 1090

 Score =  134 bits (338), Expect = 1e-31
 Identities = 106/268 (39%), Positives = 148/268 (54%), Gaps = 21/268 (7%)

Query: 339  ILTTLIGASSKKLGNT---SFDLVIIDEAAQALEVACWIPLLKGT-RCILAGDHLQLPPT 394
            I+ T + +S +KL +     FD+V+IDEAAQA EV    PL  G  RC+L GD  QLP T
Sbjct: 755  IVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPAT 814

Query: 395  IQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACV 454
            + S  A      R+LFER  +L G   T +LTVQYRMH  I D+ S+  Y  ++K    +
Sbjct: 815  VISKAAGTLLYSRSLFERF-QLAGCP-TLLLTVQYRMHPQIRDFPSRYFYQGRLKDSESI 872

Query: 455  ASHMLYDLEGVKKTSSTEPTLLLIDTAGCDMEEKKDEEDSTLNEGESEVAM-AHAKRLVQ 513
            +S      E   K     P L    + G +           ++E    V +  H ++ ++
Sbjct: 873  SSA---PDEIYYKDPVLRPYLFFNISHGRESHRGGSVSYENVDEARFCVGVYMHLQKTLK 929

Query: 514  S-GVLPSDIGIITPYAAQVVLLKMLKNK------ENSLKDIEISTVDGFQGREKEAIIIS 566
            S G     +G+ITPY  Q   LK LK++      ++ LK+I I+TVD FQG+E++ II+S
Sbjct: 930  SLGAGKVSVGVITPYKLQ---LKCLKHEFGNALGQDELKEIYINTVDAFQGQERDVIIMS 986

Query: 567  MVRSNSKKEVGFLSDRRRMNVAVTRARR 594
             VR+ S   VGF+SD RRMNVA+TRARR
Sbjct: 987  CVRA-SGHGVGFVSDIRRMNVALTRARR 1013


>At1g65780 hypothetical protein
          Length = 1065

 Score =  134 bits (338), Expect = 1e-31
 Identities = 113/311 (36%), Positives = 159/311 (50%), Gaps = 34/311 (10%)

Query: 339 ILTTLIGASSKKLGNTSFDLVIIDEAAQALEVACWIPL-LKGTR-CILAGDHLQLPPTIQ 396
           +L +    S++    T   L++IDEAAQ  E    IP+ L G R  IL GD  QLP  ++
Sbjct: 547 LLFSTASCSARLYTGTPIQLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVE 606

Query: 397 SVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVAS 456
           S  A + G GR+LFERLA L   +   ML +QYRMH  I  + +KELY  K+        
Sbjct: 607 SQIALEAGFGRSLFERLALLGHKKY--MLNIQYRMHCSISSFPNKELYGKKI-------- 656

Query: 457 HMLYDLEGVKKTSSTEPTL--------LLIDTAGCDMEEKKDEEDSTLNEGESEVAMAHA 508
               D   V++ + T+  L          I+ A    E  + E  S  N  E  V  A  
Sbjct: 657 ---LDAPTVRQRNYTKQYLPGEMYGPYSFINIAYGREEYGEGEGRSLKNNVEVVVVAAII 713

Query: 509 KRLVQSGVLPS---DIGIITPYAAQVVLLKMLKNKENSLKD------IEISTVDGFQGRE 559
             L+Q         ++G+I+PY AQV+ ++  K +E S+ D      + I TVDGFQG E
Sbjct: 714 ANLLQVSEKTKTRINVGVISPYKAQVIAIQE-KIQETSIGDAGGLFSLRIRTVDGFQGGE 772

Query: 560 KEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTET-VSSDGFLKRLIEYF 618
           ++ II+S VRSN    VGFL +RRR NV +TRAR    I+ +  T ++S    + LI+  
Sbjct: 773 EDIIIVSTVRSNGVGRVGFLGNRRRTNVLLTRARFCLWILGNEATLMNSKSVWRNLIQDA 832

Query: 619 EEHGEYQSASE 629
           +E G + SA E
Sbjct: 833 KERGCFHSAGE 843



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 6/82 (7%)

Query: 183 LDYSQKDAISKALSSKNVF------LLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 236
           L+ SQ+DAI   L  +  +      L+ GPPGTGKT T   ++   +    + L C  +N
Sbjct: 238 LNPSQEDAILNCLDVRRCYHANTVRLIWGPPGTGKTKTTSVLLFTLLNAKCRTLTCGPTN 297

Query: 237 IAVDNIVERLVPHRVKLVRIGH 258
           ++V  +  R++      ++IG+
Sbjct: 298 VSVLEVASRVLKLVSGSLKIGN 319


>At4g30100 putative protein
          Length = 1311

 Score =  131 bits (329), Expect = 1e-30
 Identities = 102/265 (38%), Positives = 147/265 (54%), Gaps = 15/265 (5%)

Query: 339  ILTTLIGASSKKLGNT---SFDLVIIDEAAQALEVACWIPLLKGT-RCILAGDHLQLPPT 394
            I+ T + +S +KL +     FD+V+IDEAAQA EV    PL  G  RC+L GD  QLP T
Sbjct: 918  IVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPAT 977

Query: 395  IQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACV 454
            + S  A      R+LFER  +L G   T +LTVQYRMH  I D+ S+  Y  ++     V
Sbjct: 978  VISKAAGTLLYSRSLFERF-QLAGCP-TLLLTVQYRMHPQIRDFPSRYFYQGRLTDSESV 1035

Query: 455  ASHMLYDLEGVKKTSSTEPTLLLIDTAGCDMEEKKDEEDSTLNEGESEVAM-AHAKRLVQ 513
            ++      E   K S  +P L    + G +           ++E    V +  H +R ++
Sbjct: 1036 STA---PDEIYYKDSVLKPYLFFDISHGRESHRGGSVSYENIDEARFCVGVYLHLQRTLK 1092

Query: 514  S-GVLPSDIGIITPYAAQVVLLKMLKNK---ENSLKDIEISTVDGFQGREKEAIIISMVR 569
            S G     +G+ITPY  Q+  LK+       ++ L++I I+TVD FQG+E++ II+S VR
Sbjct: 1093 SLGGGKVSVGVITPYKLQLKCLKIEFGNALSQDELQEIYINTVDAFQGQERDVIIMSCVR 1152

Query: 570  SNSKKEVGFLSDRRRMNVAVTRARR 594
            + S   VGF++D RRMNVA+TRA+R
Sbjct: 1153 A-SNHGVGFVADIRRMNVALTRAKR 1176


>At5g52090 putative protein
          Length = 676

 Score =  124 bits (312), Expect = 1e-28
 Identities = 105/338 (31%), Positives = 169/338 (49%), Gaps = 25/338 (7%)

Query: 312 KELRTLSREERKRQQLAVTDV----IKTSDVILTTLIGASSKKLGNT-SFDLVIIDEAAQ 366
           K LR L +       L   D+    ++ +D+IL T  GA+   +  T + +L+++DEAAQ
Sbjct: 315 KALRLLPKRFEIPDMLENEDIRKFCLQNADIILCTASGAAEMNVERTGNVELLVVDEAAQ 374

Query: 367 ALEVACWIPL-LKGTR-CILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSM 424
             E      L L G R  IL GD  QLP  + +   EK   GR+LFERL  L  ++   +
Sbjct: 375 LKECESVAALQLPGLRHAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNK--HL 432

Query: 425 LTVQYRMHQLIMDWSSKELYNSKVKAHACVASHMLYDLEGVKKTSSTEPTLLLI----DT 480
           L VQYRMH  I  + +KE Y  ++K    V    +Y    +K       + + +    + 
Sbjct: 433 LDVQYRMHPSISRFPNKEFYGGRIKDAENV-KESIYQKRFLKGNMFDSFSFINVGRGKEE 491

Query: 481 AGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQV-VLLKMLKN 539
            G     K   E + ++E  S +     +R ++  V     G+++PY  Q+  + + + +
Sbjct: 492 FGDGHSPKNMVEVAVISEIISNLYKVSCERRMKVSV-----GVVSPYKGQMRAIQEKIGD 546

Query: 540 KENSLKD----IEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQ 595
           K +SL      + + +VDGFQG E++ IIIS VRSN   +VGFL++R+R NVA+TRAR  
Sbjct: 547 KYSSLSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARHC 606

Query: 596 CCIVCDTETVSSDGFL-KRLIEYFEEHGEYQSASEYQN 632
             ++ +  T++  G +   LI      G +  A++  N
Sbjct: 607 LWVIGNETTLALSGSIWATLISESRTRGCFHDATDEMN 644



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 30/84 (35%), Positives = 45/84 (52%), Gaps = 7/84 (8%)

Query: 171 KKDVVFTSINKN-LDYSQKDAISKALSSKN------VFLLHGPPGTGKTTTVVEIILQEV 223
           + D+V   I    L+ SQ+DAI   L ++N      V L+ GPP TGKT TV  ++   +
Sbjct: 45  RSDLVLDIIRSTKLNSSQEDAILGCLETRNCTHKNSVKLIWGPPRTGKTKTVATLLFALL 104

Query: 224 KRGSKILACAASNIAVDNIVERLV 247
           K   K + CA +N A+  +  RL+
Sbjct: 105 KLRCKTVVCAPTNTAIVQVTSRLL 128


>At5g37150 sen1-like protein
          Length = 839

 Score =  124 bits (310), Expect = 2e-28
 Identities = 110/344 (31%), Positives = 167/344 (47%), Gaps = 37/344 (10%)

Query: 312 KELRTLSREERKRQQLAVTDV----IKTSDVILTTLIGASSKKLGNT-SFDLVIIDEAAQ 366
           K LR L +       L   D+    ++ +D+IL T  GA+   +  T + +L+++DEAAQ
Sbjct: 478 KALRLLPKRFEIPDMLENEDIRKFCLQNADIILCTASGAAEMNVERTGNVELLVVDEAAQ 537

Query: 367 ALEVACWIPL-LKGTR-CILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSM 424
             E      L L G R  IL GD  QLP  + +   EK   GR+LFERL  L  ++   +
Sbjct: 538 LKECESVAALQLPGLRHAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNK--HL 595

Query: 425 LTVQYRMHQLIMDWSSKELYNSKVKAHACVASHMLYDLEGVKKTSSTEPTL-------LL 477
           L VQYRMH  I  + +KE Y  ++K           D E VK++   +  L         
Sbjct: 596 LDVQYRMHPSISRFPNKEFYGGRIK-----------DAENVKESIYQKRFLQGNMFGSFS 644

Query: 478 IDTAGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGV---LPSDIGIITPYAAQV-VL 533
               G   EE  D   S  N  E  V       L +      +   +G+++PY  Q+  +
Sbjct: 645 FINVGRGKEEFGDGH-SPKNMVEVAVVSEIISNLFKVSCERRMKVSVGVVSPYKGQMRAI 703

Query: 534 LKMLKNKENSLKD----IEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAV 589
            + + +K +SL      + + +VDGFQG E++ IIIS VRSNS  +VGFL++R+R NVA+
Sbjct: 704 QEKIGDKYSSLSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNSNGKVGFLNNRQRANVAL 763

Query: 590 TRARRQCCIVCDTETVSSDGFL-KRLIEYFEEHGEYQSASEYQN 632
           TRAR    ++ +  T++  G +   LI      G +  A++  N
Sbjct: 764 TRARHCLWVIGNETTLALSGSIWATLISESRTRGCFYDATDEMN 807



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 183 LDYSQKDAISKALSSKN------VFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 236
           L+ SQ+DAI   L ++N      V L+ GPPGTGKT TV  ++   +K   K + CA +N
Sbjct: 221 LNSSQEDAILGCLETRNCTHKNSVKLIWGPPGTGKTKTVATLLFALLKLRCKTVVCAPTN 280

Query: 237 IAVDNIVERLV 247
            A+  +  RL+
Sbjct: 281 TAIVQVASRLL 291


>At5g37140 sen1-like protein
          Length = 692

 Score =  120 bits (301), Expect = 2e-27
 Identities = 103/315 (32%), Positives = 164/315 (51%), Gaps = 24/315 (7%)

Query: 330 TDVIKTSDVILTTLIGASSKKLGNT-SFDLVIIDEAAQALEVACWIPL-LKGTR-CILAG 386
           T  ++ +D+I  T  GA+      T S DL+++DEAAQ  E      L L G R  +L G
Sbjct: 358 TFCLQNADIIFCTASGAADMNPIRTGSVDLLVVDEAAQLKECESVAALQLSGLRHAVLIG 417

Query: 387 DHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNS 446
           D LQLP  + + EA+    GR+LFERL  L  ++   +L VQYRMH  I  + +KE Y  
Sbjct: 418 DELQLPAMVHN-EAK---FGRSLFERLVLLGHNK--HLLNVQYRMHPSISRFPNKEFYGG 471

Query: 447 KVKAHACVASHMLYDLEGVKKTSSTEPTLLLI----DTAGCDMEEKKDEEDSTLNEGESE 502
           ++K  A V    +Y    ++       + + +    +  G     K   E + ++E  S 
Sbjct: 472 RIKDAANV-QESIYQKRFLQGNMFGSFSFINVGRGEEEFGDGHSPKNMVEVAVISEIISN 530

Query: 503 VAMAHAKRLVQSGVLPSDIGIITPYAAQV-VLLKMLKNKENSLKDI---EISTVDGFQGR 558
           +    ++R ++  V     G+++PY  QV  + +   NK +SL  +    + +VDGFQG 
Sbjct: 531 LFKVSSERRIKMSV-----GVVSPYKGQVRAIQERTTNKYSSLSGLFTLNVRSVDGFQGG 585

Query: 559 EKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDG-FLKRLIEY 617
           E++ IIIS VRSN   +VGFL++R+R NVA+TRAR    ++ +  T++  G    +LI  
Sbjct: 586 EEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARHCLWVIGNETTLALSGSSWAKLISE 645

Query: 618 FEEHGEYQSASEYQN 632
               G +  A++ +N
Sbjct: 646 SRTLGCFYDAADEKN 660



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 183 LDYSQKDAISKALSSKN------VFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 236
           L+ SQ+ AI   L  +N      V L+ GPPGTGKT TV  ++   +K   K + CA +N
Sbjct: 74  LNSSQEAAILSCLKIRNCNHKHSVKLIWGPPGTGKTKTVATLLFCLLKLSCKTVVCAPTN 133

Query: 237 IAVDNIVERLV 247
            A+  +  RL+
Sbjct: 134 TAIVEVTSRLL 144


>At4g05540
          Length = 660

 Score =  118 bits (295), Expect = 1e-26
 Identities = 104/320 (32%), Positives = 153/320 (47%), Gaps = 36/320 (11%)

Query: 312 KELRTLSREERKRQQLAVTDV----IKTSDVILTTLIGASSKKLGNT-SFDLVIIDEAAQ 366
           + LR LS+       L   D+    ++ + +I  T  GA+        S D++++DEAAQ
Sbjct: 353 RTLRLLSKRFEIPALLMKEDIRTFCLQNAHIIFCTASGAAEMTAERAGSIDMLVVDEAAQ 412

Query: 367 ALEVACWIPL-LKGTR-CILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSM 424
             E      L L+G    +L GD LQLP  +QS   EK    R+LFERL  L       +
Sbjct: 413 LKECESVAALQLQGLHHAVLIGDELQLPAMVQSEVCEKAKFVRSLFERLDSL--GHKKHL 470

Query: 425 LTVQYRMHQLIMDWSSKELYNSKVKAHACVASHMLYDLEGVKKTSSTEPTL-------LL 477
           L VQYRMH  I  + + E Y  K+            D E VK+++  +  L         
Sbjct: 471 LNVQYRMHPSISLFPNMEFYGGKIS-----------DAEIVKESTYQKRFLQGNMFGSFS 519

Query: 478 IDTAGCDMEEKKDEEDSTLNEGESEVA---MAHAKRLVQSGVLPSDIGIITPYAAQV-VL 533
               G   EE  D   S  N  E  V    + +  ++         +G+I+PY AQV  +
Sbjct: 520 FINVGLGKEEFGDGH-SPKNMVEIAVVSEILTNLLKVSSETKTKMSVGVISPYKAQVSAI 578

Query: 534 LKMLKNKENSLKD----IEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAV 589
            + + +K  S+ D    + + +VDGFQG E++ IIIS VRSN    +GFLS+R+R NVA+
Sbjct: 579 QERIGDKYTSVSDNLFTLNVRSVDGFQGGEEDIIIISTVRSNCNGNIGFLSNRQRANVAL 638

Query: 590 TRARRQCCIVCDTETVSSDG 609
           TRAR    ++ +  T+S  G
Sbjct: 639 TRARHCLWVIGNERTLSLSG 658



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 182 NLDYSQKDAISKALSSK------NVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 235
           NL+ SQ+ AI   L ++      +V L+ GPPGTG T TV  ++   +    K + C  +
Sbjct: 79  NLNSSQESAILACLETREIRDKTSVKLIWGPPGTGNTKTVATLLFALLSLSCKTVVCTPT 138

Query: 236 NIAVDNIVERLV 247
           N AV  +  RL+
Sbjct: 139 NTAVVAVASRLL 150


>At5g37160 sen1-like protein
          Length = 871

 Score =  110 bits (275), Expect = 2e-24
 Identities = 96/316 (30%), Positives = 155/316 (48%), Gaps = 26/316 (8%)

Query: 333 IKTSDVILTTLIGASS---KKLGNTSFDLVIIDEAAQALEVACWIPLLKGTRC--ILAGD 387
           ++ +D+I  T    ++    ++G  S DL+++DE AQ  E      L     C  +L GD
Sbjct: 536 LQNADIIFCTASSVANINPARIG--SVDLLVVDETAQLKECESVAALQLPGLCHALLIGD 593

Query: 388 HLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSK 447
             QLP  + + E +K   GR+LFERL  L G     +L VQYRMH  I  + +KE Y  +
Sbjct: 594 EYQLPAMVHNEECDKAKFGRSLFERLV-LIGHS-KHLLNVQYRMHPSISRFPNKEFYGGR 651

Query: 448 VKAHACVASHMLYDLEGVKKTSSTEPTLLLI----DTAGCDMEEKKDEEDSTLNEGESEV 503
           +   A V    +Y+   ++       + + +    +  G     K   E + +++  S +
Sbjct: 652 ITDAANV-QESIYEKRFLQGNMFGTFSFINVGRGKEEFGDGHSPKNMVEVAVISKIISNL 710

Query: 504 AMAHAKRLVQSGVLPSDIGIITPYAAQV-VLLKMLKNKENSLK-----DIEISTVDGFQG 557
               ++R  +  V     G+I+PY  QV  + + + +K NSL       + + +VDGFQG
Sbjct: 711 FKVSSQRKQKMSV-----GVISPYKGQVRAIQERVGDKYNSLSVDQLFTLNVQSVDGFQG 765

Query: 558 REKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDGFL-KRLIE 616
            E + IIIS VR N    VGFLS+R+R NVA+TRAR    ++ +  T++  G +   LI 
Sbjct: 766 GEVDVIIISTVRCNVNGNVGFLSNRQRANVALTRARHCLWVIGNGTTLALSGSIWAELIS 825

Query: 617 YFEEHGEYQSASEYQN 632
                G +  A + +N
Sbjct: 826 ESRTRGCFYDAVDDKN 841



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 183 LDYSQKDAISKALSSKN------VFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 236
           L+ SQ+ AI   L ++N      V L+ GPPGTGKT TV  ++   ++   K + CA +N
Sbjct: 244 LNSSQEAAILGFLKTRNCKHKESVKLIWGPPGTGKTKTVATLLSTLMQLKCKTVVCAPTN 303

Query: 237 IAVDNIVERLV 247
             +  +  RL+
Sbjct: 304 TTIVAVASRLL 314


>At1g65810 hypothetical protein
          Length = 1050

 Score =  109 bits (273), Expect = 4e-24
 Identities = 95/294 (32%), Positives = 155/294 (52%), Gaps = 17/294 (5%)

Query: 346 ASSKKLGNTS-FDLVIIDEAAQALEVACWIPL-LKGTR-CILAGDHLQLPPTIQSVEAEK 402
           +SS +L  +S   L++IDEAAQ  E    IPL L+G +  IL GD  QLP  I+S  A +
Sbjct: 542 SSSARLHMSSPIQLLVIDEAAQLKECESAIPLQLRGLQHAILIGDEKQLPAMIKSNIASE 601

Query: 403 KGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVASHMLYDL 462
             LGR+LFERL  L  ++   +L +QYRMH  I  + ++E Y+ K+     V     Y+ 
Sbjct: 602 ADLGRSLFERLVLLGHNK--QLLNMQYRMHPSISIFPNREFYDMKILDAPSVRLRS-YEK 658

Query: 463 EGVKKTSSTEPTLLLIDTAGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPS--- 519
           + + +      + + I        E+  E  S+ N  E  V      +L           
Sbjct: 659 KFLPEKMYGPYSFINIAYG----REQFGEGYSSKNLVEVSVVAEIVSKLYSVSRKTGRTI 714

Query: 520 DIGIITPYAAQVVLLKMLKNKENSLKD---IEISTVDGFQGREKEAIIISMVRSNSKKEV 576
            +G+I+PY AQV  ++    ++ + +    + + +VDGFQG E++ IIIS VRSN    +
Sbjct: 715 SVGVISPYKAQVFAIQERIGEKYNTEGTFTVSVRSVDGFQGGEEDIIIISTVRSNGNGAI 774

Query: 577 GFLSDRRRMNVAVTRARRQCCIVCDTETVSSD-GFLKRLIEYFEEHGEYQSASE 629
           GFLS+++R NVA+TRAR    I+ +  T++++    ++L++  +    + +A E
Sbjct: 775 GFLSNQQRTNVALTRARYCLWILGNEATLTNNRSVWRQLVDDAKARNCFHNAEE 828



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 31/71 (43%), Positives = 43/71 (59%), Gaps = 6/71 (8%)

Query: 183 LDYSQKDAISKALSSK------NVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 236
           L+ SQ+DAI + L +K      N+ L+ GPPGTGKT T   ++L  +K   + L CA +N
Sbjct: 267 LNSSQEDAILRCLEAKSCNHSNNIKLIWGPPGTGKTKTTSVLLLNFLKMRCRTLTCAPTN 326

Query: 237 IAVDNIVERLV 247
           IAV  +  RLV
Sbjct: 327 IAVLEVCSRLV 337


>At2g38770 unknown protein
          Length = 1444

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 71/266 (26%), Positives = 129/266 (47%), Gaps = 37/266 (13%)

Query: 356  FDLVIIDEAAQALEVACWIPLL---------KGTRCILAGDHLQLPPTIQSVEAEKKG-L 405
            +D ++++E+AQ LE+  +IP+L         +  RCIL GDH QLPP ++++  +K   +
Sbjct: 1117 YDNLLMEESAQILEIETFIPMLLQRQEDGHARLKRCILIGDHHQLPPVVKNMAFQKYSHM 1176

Query: 406  GRTLFERLAELYGDEVTSMLTVQYRMHQLIM---DWSSKELYNSKVKAHACVASHMLYDL 462
             ++LF R   L    +   L  Q R    +    +W  ++L +  +   A +        
Sbjct: 1177 DQSLFTRFVRLGIPYIE--LNAQGRARPSLAKLYNWRYRDLGDLSIVKEAPI-------F 1227

Query: 463  EGVKKTSSTEPTLLLIDTAGCDMEEKKDEEDSTL---NEGESEVAMAHAKRLVQSGVLPS 519
            +      S E  L+ +     D E + +   S     N+GE+E  ++    +   G   +
Sbjct: 1228 QRANAGFSYEYQLVNVP----DYEGRGESTPSPWFYQNQGEAEYIVSVYIYMRLLGYPAN 1283

Query: 520  DIGIITPYAAQVVLLKMLKNKENSLKDI-----EISTVDGFQGREKEAIIISMVRSNSKK 574
             I I+T Y  Q +L++ + N+            +++TVD FQG++ + I++S+VR+   +
Sbjct: 1284 KISILTTYNGQKLLIRDVINRRCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRT---R 1340

Query: 575  EVGFLSDRRRMNVAVTRARRQCCIVC 600
             VG L D RR+ VA++RAR    + C
Sbjct: 1341 FVGHLRDVRRLVVAMSRARLGLYVFC 1366



 Score = 35.0 bits (79), Expect = 0.13
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 205 GPPGTGKTTTVVEI--ILQEVKRGSKILACAASNIAV----DNIVERLVPHRVKLVRIGH 258
           GPPGTGKT T V+I  +L       + L    SN A+    + I+ER VP R  L+R+G 
Sbjct: 887 GPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMERDVPARY-LLRLGQ 945

Query: 259 PARLLPQVVDSALDAQV 275
             + L   +D +   +V
Sbjct: 946 GEQELATDLDFSRQGRV 962


>At1g48650 hypothetical protein
          Length = 1167

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 26/85 (30%), Positives = 46/85 (53%), Gaps = 7/85 (8%)

Query: 185 YSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQ---EVKRGS--KILACAASNIAV 239
           Y +KDA+ KA+++  V ++ G  G GKTT + + IL+   E  RG+   I+      I+ 
Sbjct: 272 YKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQPRRISA 331

Query: 240 DNIVERLVPHRVKLV--RIGHPARL 262
            ++ ER+   R + +   +G+  RL
Sbjct: 332 ISVSERVAAERGEQIGESVGYKVRL 356


>At1g06670 DEIH-box RNA/DNA helicase
          Length = 1576

 Score = 37.0 bits (84), Expect = 0.034
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 175 VFTSINKNLDYSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEV----KRGSKIL 230
           +F + +K    S +DAI  A+ S  V L+ G  G GKTT V + +L  +    K   KI+
Sbjct: 210 IFEARSKLPIASFRDAIISAVESNQVVLIAGETGCGKTTQVPQYLLDHMWHSKKEACKII 269

Query: 231 ACAASNIAVDNIVERLVPHRVKLV--RIGHPARL 262
                 I+  ++ +R+   R + +   +G+  RL
Sbjct: 270 CTQPRRISAISVSDRISWERGETIGRTVGYKVRL 303


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.316    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,869,871
Number of Sequences: 26719
Number of extensions: 535303
Number of successful extensions: 2256
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2104
Number of HSP's gapped (non-prelim): 123
length of query: 633
length of database: 11,318,596
effective HSP length: 105
effective length of query: 528
effective length of database: 8,513,101
effective search space: 4494917328
effective search space used: 4494917328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)