BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC143339.8 + phase: 0 /pseudo
(518 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10830 putative protein 119 5e-27
At3g45550 putative protein 118 9e-27
At2g31520 putative non-LTR retroelement reverse transcriptase 117 2e-26
At2g25550 putative non-LTR retroelement reverse transcriptase 116 3e-26
At1g47910 reverse transcriptase, putative 105 6e-23
At2g45230 putative non-LTR retroelement reverse transcriptase 103 3e-22
At2g01840 putative non-LTR retroelement reverse transcriptase 100 3e-21
At1g25430 hypothetical protein 99 4e-21
At4g09710 RNA-directed DNA polymerase -like protein 99 6e-21
At3g44650 putative protein 97 3e-20
At2g31080 putative non-LTR retroelement reverse transcriptase 97 3e-20
At1g24640 hypothetical protein 96 6e-20
At3g32110 non-LTR reverse transcriptase, putative 95 8e-20
At2g16680 putative non-LTR retroelement reverse transcriptase 95 8e-20
At2g41580 putative non-LTR retroelement reverse transcriptase 95 1e-19
At2g05200 putative non-LTR retroelement reverse transcriptase 94 2e-19
At1g31030 F17F8.5 94 2e-19
At2g05980 putative non-LTR retroelement reverse transcriptase 92 7e-19
At2g17610 putative non-LTR retroelement reverse transcriptase 91 2e-18
At1g47850 hypothetical protein 91 2e-18
>At4g10830 putative protein
Length = 1294
Score = 119 bits (297), Expect = 5e-27
Identities = 77/212 (36%), Positives = 120/212 (56%), Gaps = 3/212 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VLVNG P +RG+R+GDPLS +LF+L A+ LN ++++ V G IG +
Sbjct: 979 VLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIG-NGVPG 1037
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNE 126
++HLQFADD+L + N +AL+ V + SG K+N KS++ G V + N
Sbjct: 1038 VTHLQFADDSLFFCQSNVRNCQALKDVFDVYE-YYSGQKINMSKSMITFGSRVHGTTQNR 1096
Query: 127 ATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLK 186
+LG + YLGL ++ + +++RVKKR S W +K+LS G+ ++LK
Sbjct: 1097 LKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLK 1156
Query: 187 VFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
S+ VYA+S F+ P I+S +E+L +NF+
Sbjct: 1157 SVAMSMPVYAMSCFKLPLNIVSEIEALLMNFW 1188
>At3g45550 putative protein
Length = 851
Score = 118 bits (295), Expect = 9e-27
Identities = 78/212 (36%), Positives = 117/212 (54%), Gaps = 3/212 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VL+NGSP RG+R+GDPLS +LF+L + L+ +++ G IG + +
Sbjct: 238 VLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIG-NGAPA 296
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNE 126
I+HLQFADD+L + N +AL+ V + SG K+N KSL+ G V S
Sbjct: 297 ITHLQFADDSLFFCQANVRNCQALKDVFDVYE-YYSGQKINVQKSLITFGSRVYGSTQTR 355
Query: 127 ATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLK 186
T+L YLGL ++ + ++DRVK+R + W +KFLS G+ +LLK
Sbjct: 356 LKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLK 415
Query: 187 VFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
++ VYA+S F+ P GI+S +ESL +NF+
Sbjct: 416 SVALAMPVYAMSCFKLPQGIVSEIESLLMNFW 447
Score = 52.0 bits (123), Expect = 8e-07
Identities = 37/124 (29%), Positives = 53/124 (41%), Gaps = 15/124 (12%)
Query: 393 RILLSDITLQHTDRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVL------LDL---IWH 443
RI LS T TDR +W + + Y+V Y + T P T + +DL IW+
Sbjct: 612 RIYLS--TRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHGSVDLKTKIWN 669
Query: 444 KQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSCPFY 503
+ K+ F WR+L LPT D L G+ + C + E+ H +CPF
Sbjct: 670 LPIMPKLKHFLWRILSKALPTTDRLTTRGM----RIDPGCPRCRRENESINHALFTCPFA 725
Query: 504 VALW 507
W
Sbjct: 726 TMAW 729
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 117 bits (292), Expect = 2e-26
Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 3/212 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VL+NGSP RG+R+GDPLS +LF+L + L+ ++ G IG + +
Sbjct: 773 VLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG-NGAPA 831
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNE 126
I+HLQFADD+L + N +AL+ V + SG K+N KS++ G V S ++
Sbjct: 832 ITHLQFADDSLFFCQANVRNCQALKDVFDVYE-YYSGQKINVQKSMITFGSRVYGSTQSK 890
Query: 127 ATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLK 186
+L YLGL ++ +E ++DRVKKR S W ++FLS G+ ++LK
Sbjct: 891 LKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLK 950
Query: 187 VFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
++ VYA+S F+ P GI+S +ESL +NF+
Sbjct: 951 SVALAMPVYAMSCFKLPKGIVSEIESLLMNFW 982
Score = 42.0 bits (97), Expect = 8e-04
Identities = 29/117 (24%), Positives = 44/117 (36%), Gaps = 23/117 (19%)
Query: 405 DRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVL------LDL---IWHKQVPLKVSIFAW 455
D+ +W + + Y+V Y +LT P + +DL IW+ + K+ F W
Sbjct: 1157 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 1216
Query: 456 RLLQNRLPTKDNLCVHG-----VIPHSHDNQHCVIGCGDFETAQHLFRSCPFYVALW 507
R L L T + L G + P H E+ H +CPF W
Sbjct: 1217 RALSQALATTERLTTRGMRIDPICPRCHREN---------ESINHALFTCPFATMAW 1264
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 116 bits (291), Expect = 3e-26
Identities = 77/212 (36%), Positives = 117/212 (54%), Gaps = 3/212 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VL+NGSP RG+R+GDPLS +LF+L + L+ ++ G IG + +
Sbjct: 999 VLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG-NGAPA 1057
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNE 126
I+HLQFADD+L + N +AL+ V + SG K+N KS++ G V S +
Sbjct: 1058 ITHLQFADDSLFFCQANVRNCQALKDVFDVYE-YYSGQKINVQKSMITFGSRVYGSTQSR 1116
Query: 127 ATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLK 186
+L YLGL ++ +E ++DRVKKR S W ++FLS G+ ++LK
Sbjct: 1117 LKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLK 1176
Query: 187 VFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
++ VYA+S F+ P GI+S +ESL +NF+
Sbjct: 1177 SVALAMPVYAMSCFKLPKGIVSEIESLLMNFW 1208
Score = 41.6 bits (96), Expect = 0.001
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 405 DRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVL------LDL---IWHKQVPLKVSIFAW 455
D+ +W + + Y+V Y +LT P + +DL IW+ + K+ F W
Sbjct: 1383 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 1442
Query: 456 RLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSCPFYVALW 507
R L L T + L G+ + C + E+ H +CPF W
Sbjct: 1443 RALSQALATTERLTTRGM----RIDPSCPRCHRENESINHALFTCPFATMAW 1490
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 105 bits (262), Expect = 6e-23
Identities = 80/223 (35%), Positives = 116/223 (51%), Gaps = 11/223 (4%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
I T VL+NG P ERGLR+GDPLS +LF+L E L ++ N+ +G +
Sbjct: 394 ITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKV 453
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRS--GLKMNFHKSLL-VGV 117
S +SHL FADD+L AN +L +L+ S G ++NF KS + G
Sbjct: 454 AT-PSPAVSHLLFADDSLFF---CKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGH 509
Query: 118 NVSESWLNEATTMLGCKVGKVPFLYLGL--SIGGDPRRLLFWESVVDRVKKRLSGWRSKF 175
V +S + +LG YLGL S+GG ++ + V DR++ R++GW +KF
Sbjct: 510 KVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSF--VRDRLQSRINGWSAKF 567
Query: 176 LSFGGRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
LS GG+ V++K ++L Y +S FR P I S L S F+
Sbjct: 568 LSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFW 610
Score = 32.0 bits (71), Expect = 0.85
Identities = 18/67 (26%), Positives = 29/67 (42%), Gaps = 4/67 (5%)
Query: 441 IWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSC 500
IW Q P K+ F W++L +P +NL G++ ++ CV E+ H C
Sbjct: 828 IWKVQCPPKLRHFLWQILSGCVPVSENLRKRGIL----CDKGCVSCGASEESINHTLFQC 883
Query: 501 PFYVALW 507
+W
Sbjct: 884 HPARQIW 890
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 103 bits (256), Expect = 3e-22
Identities = 72/214 (33%), Positives = 112/214 (51%), Gaps = 7/214 (3%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VL+NG+P E RGLR+GDPLS +LF++ E L M+QS + N +G + +
Sbjct: 617 VLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGLKVAR-GAPP 675
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*--CRSGLKMNFHKS-LLVGVNVSESWL 124
ISHL FADD++ N AL ++ ++ SG ++N+ KS + G ++SE
Sbjct: 676 ISHLLFADDSMFY---CKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERR 732
Query: 125 NEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVL 184
LG + +YLGL ++ + DR+ K++ GW+S FLS GG+ +L
Sbjct: 733 CLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEIL 792
Query: 185 LKVFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
LK +L Y +S F+ P I +ES+ F+
Sbjct: 793 LKAVAMALPTYTMSCFKIPKTICQQIESVMAEFW 826
Score = 50.1 bits (118), Expect = 3e-06
Identities = 35/113 (30%), Positives = 44/113 (37%), Gaps = 14/113 (12%)
Query: 405 DRWVWRLDPSNGYSVNGVYQMLT------SQPVQTSEVLLD----LIWHKQVPLKVSIFA 454
DR+ W S YSV Y ++T + P + + LD IW VP K+ F
Sbjct: 1008 DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFL 1067
Query: 455 WRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSCPFYVALW 507
WR + N L NL H + CV ET HL CPF W
Sbjct: 1068 WRCVNNCLSVASNLAYR----HLAREKSCVRCPSHGETVNHLLFKCPFARLTW 1116
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 100 bits (248), Expect = 3e-21
Identities = 70/219 (31%), Positives = 112/219 (50%), Gaps = 3/219 (1%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
+ + + VL+NGSP + RG+R+GDPLS +LFL AE L+ M++ G I
Sbjct: 972 VTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKI 1031
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNV 119
+ D + ISHL FADD+L S N+ L + SG K+N+ KS ++ G +
Sbjct: 1032 TK-DCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEA-SGQKINYAKSSIIFGQKI 1089
Query: 120 SESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFG 179
+LG + YLGL R++ +E +V +VK+R GW +LS
Sbjct: 1090 PTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPA 1149
Query: 180 GRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
G+ +++K +L VY+++ F P+ I + + SL F+
Sbjct: 1150 GKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFW 1188
Score = 40.0 bits (92), Expect = 0.003
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 19/148 (12%)
Query: 375 WQWRRRLW---AWEEELLGECRILLSDITLQH---TDRWVWRLDPSNGYSVNGVYQMLTS 428
W+ +R W +E L E + L + L + D + W + Y+V Y + T
Sbjct: 1307 WRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATH 1366
Query: 429 QPVQTSEVLLDL---------IWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHD 479
+ E++ L IW ++ K+ F WR L L T L IP
Sbjct: 1367 VNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRN-IPADPT 1425
Query: 480 NQHCVIGCGDFETAQHLFRSCPFYVALW 507
Q C C ET H+ +C + +W
Sbjct: 1426 CQRC---CNADETINHIIFTCSYAQVVW 1450
>At1g25430 hypothetical protein
Length = 1213
Score = 99.4 bits (246), Expect = 4e-21
Identities = 73/223 (32%), Positives = 110/223 (48%), Gaps = 8/223 (3%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
I T T V +NG F +GLR+GDPLS +LF+LA E + ++ S E + +
Sbjct: 627 ISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHP- 685
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKS--LLVGVN 118
+ ++ ISHL FADD ++ ++ + L SGLK+N KS L G+N
Sbjct: 686 -KASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFA-SWSGLKVNKDKSHLYLAGLN 743
Query: 119 VSESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSF 178
ES N A G +G +P YLGL + R+ +E +++++ R W +K LSF
Sbjct: 744 QLESNANAA---YGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSF 800
Query: 179 GGRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVG 221
GR+ L+ + + +S F P G I +ESL F G
Sbjct: 801 AGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSG 843
Score = 35.4 bits (80), Expect = 0.077
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 392 CRILLSDITLQHTDRWVWRLDP--SNGYSVNGVYQMLTSQPVQTSEVLLDLIWHKQVPLK 449
C + + + DR+ W ++ G+S ++ + +P T + IW K K
Sbjct: 1006 CTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAI--RPKATVKSWASSIWFKGAVPK 1063
Query: 450 VSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSCPFYVALW 507
+ W NRL T+ L G I + CV+ E+ HL C F +W
Sbjct: 1064 YAFNMWVSHLNRLLTRQRLASWGHI----QSDACVLCSFASESRDHLLLICEFSAQVW 1117
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 99.0 bits (245), Expect = 6e-21
Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 5/220 (2%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
+CT + L+NGSP RGLR+GDPLS +LF+L E L+ + + E + G +
Sbjct: 551 VCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRV 610
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVS 120
S ++HL FADDT+ + AL +L SG +N KS + + +
Sbjct: 611 AR-GSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYE-LASGQSINLAKSAITFSSKT 668
Query: 121 ESWLNEATTMLGCKVGKVPFL--YLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSF 178
+ L ++ + YLGL R+ + S+VDR+++R W +FLS
Sbjct: 669 PQDIKRRVK-LSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSS 727
Query: 179 GGRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
G+ +LLK LSS+ YA+ F+ P+ + ++S+ F+
Sbjct: 728 AGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFW 767
Score = 37.4 bits (85), Expect = 0.020
Identities = 32/135 (23%), Positives = 56/135 (40%), Gaps = 17/135 (12%)
Query: 378 RRRLWAWEEELLGECRILLSDITLQHTDRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVL 437
R+ L +E+++ +I ++ + LQ D VW S Y+ Y + S+
Sbjct: 913 RKHLPQYEDQIR---KITINALPLQ--DSLVWLPVKSGEYTTKTGYALAKLNSFPASQ-- 965
Query: 438 LDLIWHKQV-----PLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFET 492
LD W K + KV F W+ ++ LP + L + + + CG E+
Sbjct: 966 LDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNI-----EAEVTCKRCGQTES 1020
Query: 493 AQHLFRSCPFYVALW 507
+ HL CP+ +W
Sbjct: 1021 SLHLMLLCPYAKKVW 1035
>At3g44650 putative protein
Length = 762
Score = 96.7 bits (239), Expect = 3e-20
Identities = 68/230 (29%), Positives = 113/230 (48%), Gaps = 9/230 (3%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
I T + V VNG F RGLR+G LS +LF++ + L+ ++ +V I I
Sbjct: 186 ITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIG-----RI 240
Query: 61 GEHDS---MVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGV 117
G H M ++HL FADD +++ ++ + V L SGLK++ KS +
Sbjct: 241 GYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKW-SGLKISMEKSTIFSA 299
Query: 118 NVSESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLS 177
+S + + T +VG++P YLGL + + + ++++++KR+ W S+FLS
Sbjct: 300 GLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLS 359
Query: 178 FGGRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVGVRIIGK 227
F GR L+ + S + LS F+ P I +E L +F G + K
Sbjct: 360 FAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSK 409
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 96.7 bits (239), Expect = 3e-20
Identities = 76/213 (35%), Positives = 112/213 (51%), Gaps = 13/213 (6%)
Query: 5 TMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHD 64
+M VL NG T F RGLR+GDPLS +LF+L E L ++++ V + ++
Sbjct: 477 SMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGG 536
Query: 65 SMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CR-SGLKMNFHKS-LLVGVNVSES 122
S +SH+ FADD +L S A +R +R VL R C SG K++ KS + NVS
Sbjct: 537 SK-LSHVCFADDLILFAEASVAQIRIIRRVLE--RFCEASGQKVSLEKSKIFFSHNVSRE 593
Query: 123 W--LNEATTMLGC--KVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSF 178
L + +GC ++GK YLG+ I + V++RV RL+GW+ + LS
Sbjct: 594 MEQLISEESGIGCTKELGK----YLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSL 649
Query: 179 GGRLVLLKVFLSSLHVYALSFFRAPSGIISTLE 211
GR+ L K LSS+ V+ +S P + TL+
Sbjct: 650 AGRITLTKAVLSSIPVHVMSAILLPVSTLDTLD 682
Score = 45.1 bits (105), Expect = 1e-04
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 384 WEEELLGEC------RILLS---DITLQHTDRWVWRLDPSNGYSVNGVYQMLTSQPVQTS 434
W E+LG R LLS + L + D W+ ++V Y +L
Sbjct: 838 WNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRP 897
Query: 435 EV--LLDLIWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFET 492
+ + IW P +V +F W + QN + T V V H +N C + G ET
Sbjct: 898 NMGSFFNRIWKLITPERVRVFIWLVSQNVIMTN----VERVRRHLSENAICSVCNGAEET 953
Query: 493 AQHLFRSCPFYVALWGQI 510
H+ R CP +W ++
Sbjct: 954 ILHVLRDCPAMEPIWRRL 971
>At1g24640 hypothetical protein
Length = 1270
Score = 95.5 bits (236), Expect = 6e-20
Identities = 72/219 (32%), Positives = 106/219 (47%), Gaps = 3/219 (1%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
+ + T VL+N P L+RGLR+GDPLS FLF+L EGL ++ G
Sbjct: 573 VSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQF 632
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHK-SLLVGVNV 119
E+ MV HL FADD+L + S L+ +L + +G +N +K S+ G V
Sbjct: 633 SENGPMV-HHLLFADDSLFLCKASREQSLVLQKILKVYG-NATGQTINLNKSSITFGEKV 690
Query: 120 SESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFG 179
E T LG YLGL ++ + DR+K++L W ++ LS G
Sbjct: 691 DEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQG 750
Query: 180 GRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
G+ VLLK ++ V+A+S F+ P LES +F+
Sbjct: 751 GKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFW 789
Score = 35.4 bits (80), Expect = 0.077
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 384 WEEELLGEC-------RILLSDITLQHTDRWVWRLDPSNGYSVNGVYQMLTSQPVQT--S 434
W+EE+L + RI + D +VW+L+ S +SV Y + Q S
Sbjct: 935 WDEEVLHDLFLPEDILRIKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRS 994
Query: 435 EV--------LLDLIWHKQVPLKVSIFAWRL 457
EV L +W+ Q K+ IF W++
Sbjct: 995 EVSMQPSTLGLKTQVWNLQTDPKIKIFLWKV 1025
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 95.1 bits (235), Expect = 8e-20
Identities = 70/211 (33%), Positives = 103/211 (48%), Gaps = 5/211 (2%)
Query: 5 TMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHD 64
+M +L NG T F RGLR+GDPLS +LF+L E L +++S + + I +
Sbjct: 1153 SMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIKISQSG 1212
Query: 65 SMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*C-RSGLKMNFHKS-LLVGVNVSES 122
+SH+ FADD +L S +R LR VL C SG K++ KS + NV
Sbjct: 1213 PR-LSHICFADDLILFAEASIDQIRVLRGVLEKF--CGASGQKVSLEKSKIYFSKNVLRD 1269
Query: 123 WLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRL 182
+ G K K YLG+ I + V+ R RL+GW+ + LSF GRL
Sbjct: 1270 LGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRL 1329
Query: 183 VLLKVFLSSLHVYALSFFRAPSGIISTLESL 213
L K L+S+ V+ +S + P + L+ +
Sbjct: 1330 TLTKAVLTSILVHTMSTIKLPQSTLDGLDKV 1360
Score = 53.1 bits (126), Expect = 4e-07
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 10/152 (6%)
Query: 364 ICVS*DEMKGGWQWRRRLWA---WEEELLGECRILLSDITLQHTDRWVWRLDPSNGYSVN 420
+C + D + G W A + + L +++ +T H DR W + ++V
Sbjct: 1501 LCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAH-DRLAWGMTSDGRFTVK 1559
Query: 421 GVYQMLTSQ--PVQTSEVLLDLIWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSH 478
+ MLT+ P Q L +W Q P +V +F W ++ + T H
Sbjct: 1560 SAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRR----HLC 1615
Query: 479 DNQHCVIGCGDFETAQHLFRSCPFYVALWGQI 510
D+ C + G E+ H+ R CP +W +I
Sbjct: 1616 DSDVCQVCRGGIESILHVLRDCPAMSGIWDRI 1647
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 95.1 bits (235), Expect = 8e-20
Identities = 79/247 (31%), Positives = 119/247 (47%), Gaps = 15/247 (6%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
+ + T VL+NG ERG+R+GDP+S FLF+L E L ++Q SG
Sbjct: 562 VTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSGIQF 621
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNV 119
V +HL F DDT LV + ++ + L SG +N KS + GV V
Sbjct: 622 NGSGPSV-NHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHI-SGQLINVEKSSITFGVKV 679
Query: 120 SES---WL-NEATTMLGCKVGKVPFLYLGL--SIGGDPRRLLFWESVVDRVKKRLSGWRS 173
E W+ N + L GK YLGL ++ G + L + + ++++ LSGW
Sbjct: 680 DEDTKRWIKNRSGIHLEGGTGK----YLGLPENLSGSKQDLFGY--IKEKLQSHLSGWYD 733
Query: 174 KFLSFGGRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVGVRIIGKFHGLVG 233
K LS GG+ +LLK +L VY ++ FR P G+ + L S+ ++F+ + K H + G
Sbjct: 734 KTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGG 793
Query: 234 IIFVLVK 240
L K
Sbjct: 794 KKLTLPK 800
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 437 LLDLIWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHL 496
L D +W + K+ +F W+ L+ L +D L G+ C+ + ET HL
Sbjct: 994 LFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGI----RTADGCLFCKEEIETINHL 1049
Query: 497 FRSCPFYVALW 507
CPF +W
Sbjct: 1050 LFQCPFARQVW 1060
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 94.7 bits (234), Expect = 1e-19
Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 3/243 (1%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
+ + + VL+NG P RGLR+GDPLS FLF+L E L ++ +I SG
Sbjct: 339 VSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQF 398
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNV 119
V +HL FADDTLL+ S + L SG +N KS + G V
Sbjct: 399 NGTGPSV-NHLLFADDTLLICKASQLECAEIMHCLSQYGHI-SGQMINSEKSAITFGAKV 456
Query: 120 SESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFG 179
+E G + YLGL + + + + ++++ RLSGW +K LS G
Sbjct: 457 NEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQG 516
Query: 180 GRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVGVRIIGKFHGLVGIIFVLV 239
G+ +LLK + VYA++ FR + + L S+ ++F+ V+ K H + +L
Sbjct: 517 GKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLP 576
Query: 240 KLM 242
K +
Sbjct: 577 KFL 579
Score = 34.7 bits (78), Expect = 0.13
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 20/140 (14%)
Query: 379 RRLWAWEE-ELLGECRILLSDITLQHTDRWVWRLDPSNGYSVNGVY---------QMLTS 428
R L+ W+E +++ + R + S D + W Y+V Y QM
Sbjct: 707 RDLFPWKEIQIICQQRPMAS-----RQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQMFKE 761
Query: 429 QPVQTS-EVLLDLIWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGC 487
Q S L IW+ K+ +F W++L+ + +D L GV+ C +
Sbjct: 762 AEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVL----IEDGCSMCP 817
Query: 488 GDFETAQHLFRSCPFYVALW 507
ET H+ CP +W
Sbjct: 818 EKNETLNHILFQCPLARQVW 837
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 93.6 bits (231), Expect = 2e-19
Identities = 63/211 (29%), Positives = 105/211 (48%), Gaps = 3/211 (1%)
Query: 9 LVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMVI 68
L+NG+P + RGLR+GDPLS LF+L E L+ + + G + + V
Sbjct: 513 LINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRV- 571
Query: 69 SHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNEA 127
+HL FADDT+ + L +L SG +NFHKS + S +
Sbjct: 572 NHLLFADDTMFFSKSDPESCNKLSEILSRYGKA-SGQSINFHKSSVTFSSKTPRSVKGQV 630
Query: 128 TTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLKV 187
+L + YLGL R+ + +++D+++++ W S+FLS G+ V+LK
Sbjct: 631 KRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKA 690
Query: 188 FLSSLHVYALSFFRAPSGIISTLESLFINFF 218
L+S+ +Y++S F+ PS + ++SL F+
Sbjct: 691 VLASMPLYSMSCFKLPSALCRKIQSLLTRFW 721
Score = 31.6 bits (70), Expect = 1.1
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 405 DRWVWRLDPSNGYSVNGVYQM--LTSQPV-QTSEVLLDLIWHKQVPLKVSIFAWRLLQNR 461
D+ W S Y+ Y + + S P+ QT +W Q K+ W+
Sbjct: 895 DKLAWLPVKSGQYTSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEA 954
Query: 462 LPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSCPFYVALW 507
LP L + P + ++ CG E+ HLF C F +W
Sbjct: 955 LPVGIQLVRRHISPSAACHR-----CGAPESTTHLFFHCEFAAQVW 995
>At1g31030 F17F8.5
Length = 872
Score = 93.6 bits (231), Expect = 2e-19
Identities = 68/223 (30%), Positives = 112/223 (49%), Gaps = 7/223 (3%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
I TA+ V VNG F +RGLR+G LS +LF++ + L+ M+ + F +
Sbjct: 280 ITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHP- 338
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLL-R*C-RSGLKMNFHKSLLVGVN 118
+ + ++HL FADD +++ S R++ +L + C RSGL+++ KS L
Sbjct: 339 -KCQRLGLTHLSFADDLMVL---SDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAG 394
Query: 119 VSESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSF 178
VS E VG++P YLGL + + +++++KKR++ W +F SF
Sbjct: 395 VSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSF 454
Query: 179 GGRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVG 221
GR L+K L S+ + L+ FR P I ++ L +F G
Sbjct: 455 AGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSG 497
Score = 40.0 bits (92), Expect = 0.003
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 441 IWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSC 500
+W + K ++ W + NRLPT D + N CV+ + +T +HLF SC
Sbjct: 707 VWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGN--CVLCTNNSKTLEHLFFSC 764
Query: 501 PFYVALWGQI 510
+ +W +
Sbjct: 765 SYASTVWAAL 774
>At2g05980 putative non-LTR retroelement reverse transcriptase
Length = 1352
Score = 92.0 bits (227), Expect = 7e-19
Identities = 64/221 (28%), Positives = 109/221 (48%), Gaps = 3/221 (1%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
I TA+ V VNG + F ERGLR+G LS +L+++ L+ M+ S +
Sbjct: 780 IGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHP- 838
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVS 120
+M ++HL FADD ++ + +++ A+ S LK++ KS + +S
Sbjct: 839 -RCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFA-AMSWLKISLEKSTIFMAGIS 896
Query: 121 ESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGG 180
+ ++G +P YLGL + + +V++++ R++ W ++FLSF G
Sbjct: 897 PNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAG 956
Query: 181 RLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVG 221
RL L+K LSS+ + LS FR P + +E +F F G
Sbjct: 957 RLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSG 997
Score = 42.0 bits (97), Expect = 8e-04
Identities = 22/67 (32%), Positives = 28/67 (40%), Gaps = 4/67 (5%)
Query: 441 IWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSC 500
+W K S W NRL T D +C +S CV + ET HLF SC
Sbjct: 1207 VWFSASTPKYSFVTWLAFHNRLTTSDKICKW----NSGARYDCVFCGEELETRDHLFFSC 1262
Query: 501 PFYVALW 507
P+ +W
Sbjct: 1263 PYSSHVW 1269
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 90.9 bits (224), Expect = 2e-18
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 3/213 (1%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
I T T +L+NG P +RG+R+GDP+S +L+LL EGL+ ++Q+ ++ G+
Sbjct: 65 ITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFK- 123
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKS-LLVGVNV 119
+ ISHL FA D+L+ + L VL L SG +NF KS +L G +
Sbjct: 124 ASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYE-KASGQAVNFQKSAILFGKGL 182
Query: 120 SESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFG 179
+ + +LG + YLGL + + + + +++ W +K LS
Sbjct: 183 DFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPA 242
Query: 180 GRLVLLKVFLSSLHVYALSFFRAPSGIISTLES 212
G+ VL+K ++++ Y++S F P +I + S
Sbjct: 243 GKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITS 275
Score = 37.7 bits (86), Expect = 0.015
Identities = 30/117 (25%), Positives = 41/117 (34%), Gaps = 17/117 (14%)
Query: 405 DRWVWRLDPSNGYSVNGVYQMLTSQPVQ-----------TSEVLLDLIWHKQVPLKVSIF 453
D W YSV Y +L Q +++ + IW + P K+ F
Sbjct: 454 DAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHF 513
Query: 454 AWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGD-FETAQHLFRSCPFYVALWGQ 509
WR N LPT NL +I + CG+ E HL C +W Q
Sbjct: 514 WWRSAHNALPTAGNLKRRRLITDDTCQR-----CGEASEDVNHLLFQCRVSKEIWEQ 565
>At1g47850 hypothetical protein
Length = 799
Score = 90.9 bits (224), Expect = 2e-18
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 9/224 (4%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQ-SMVEINIFSGYS 59
I TAT V VNG F +RGLR+G LS +LF++ L+ M+ + V NI GY
Sbjct: 206 ISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNI--GYH 263
Query: 60 IGEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*C--RSGLKMNFHKSLLVGV 117
+ + ++HL FADD L+V + R++ V+ + + +SGL ++ KS L
Sbjct: 264 -PKCKKLSLTHLCFADD-LMVFIDG--QQRSVEGVINIFKEFAGKSGLHISLEKSTLYLA 319
Query: 118 NVSESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLS 177
VSE N + G++P YLGL + + ++D+V+ ++S W ++ LS
Sbjct: 320 GVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLS 379
Query: 178 FGGRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVG 221
+ GRL L+ + SL + +S +R P+G I +E L F G
Sbjct: 380 YAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSG 423
Score = 35.0 bits (79), Expect = 0.10
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 441 IWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQ-HLFRS 499
+W K S W + +RL T D + +S +CV+ CG+ E ++ HLF S
Sbjct: 634 VWFSYNTPKYSFLLWLAIHDRLSTGDRIKKW----NSGQQVNCVL-CGNVEESRNHLFFS 688
Query: 500 CPFYVALWGQI 510
C + A+W +
Sbjct: 689 CHYTTAIWDNL 699
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.338 0.150 0.517
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,452,654
Number of Sequences: 26719
Number of extensions: 475808
Number of successful extensions: 1710
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 148
length of query: 518
length of database: 11,318,596
effective HSP length: 104
effective length of query: 414
effective length of database: 8,539,820
effective search space: 3535485480
effective search space used: 3535485480
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC143339.8