BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142526.4 + phase: 0
(187 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23930 unknown protein (At4g23930) 192 7e-50
At1g64450 unknown protein 171 3e-43
At3g54200 unknown protein 93 7e-20
At2g46150 hypothetical protein 64 6e-11
At4g23610 unknown protein 47 6e-06
At2g01080 unknown protein 45 2e-05
At2g27260 unknown protein 44 4e-05
At1g52330 hypothetical protein 40 0.001
At2g35980 similar to harpin-induced protein hin1 from tobacco 39 0.001
At2g27080 Unknown protein (At2g27080; T20P8.13) 39 0.001
At5g36970 putative protein 39 0.002
At4g01410 putative hypoersensitive response protein 39 0.002
At5g45320 unknown protein 38 0.003
At5g21130 putative protein 38 0.004
At3g05975 putative protein 38 0.004
At2g35460 similar to harpin-induced protein hin1 from tobacco 37 0.006
At1g17620 unknown protein 36 0.014
At2g46300 unknown protein 35 0.018
At1g08160 unknown protein 35 0.018
At3g11660 unknown protein 35 0.024
>At4g23930 unknown protein (At4g23930)
Length = 187
Score = 192 bits (489), Expect = 7e-50
Identities = 95/184 (51%), Positives = 134/184 (72%), Gaps = 12/184 (6%)
Query: 14 TNLASCLVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTTVNFTFSQ 73
+NLASC VAT+F++F++I T+Y T+F+P+DP+ISVT+V++PSF++ N+S V+FTFSQ
Sbjct: 6 SNLASCAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSS--VSFTFSQ 63
Query: 74 YTSVKNPNRGTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLE 133
+++V+NPNR FSHY++ QL YG +IG+ FVPAG+I + RT+ M ATF+VQS PL
Sbjct: 64 FSAVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAA 123
Query: 134 PEGL----------QMGPTVEIESTIEMVGRVRVLHLFSHHVEAKADCRVAIAVSDGSVL 183
+ G TVEIES +EM GRVRVL LF+H + AK +CR+AI+ SDGS++
Sbjct: 124 SSSQISAAQFQNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSIV 183
Query: 184 GFHC 187
C
Sbjct: 184 AVRC 187
>At1g64450 unknown protein
Length = 342
Score = 171 bits (432), Expect = 3e-43
Identities = 82/131 (62%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
Query: 1 MTKHEHETPPSNRTNLASCLVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNL 60
M K S RTNLASC VATVFL+ +L+++ +YFT+FKP+DPKISV AVQLPSF +
Sbjct: 1 MAKPHDRRRSSGRTNLASCAVATVFLLILLVVLLVVYFTVFKPKDPKISVNAVQLPSFAV 60
Query: 61 TNNSTTVNFTFSQYTSVKNPNRGTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFMA 120
+NN T NF+FSQY +V+NPNR FSHYDSS QLL G Q+GFMF+PAGKI++ R Q+MA
Sbjct: 61 SNN--TANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMA 118
Query: 121 ATFTVQSLPLN 131
ATFTV S P++
Sbjct: 119 ATFTVHSFPIS 129
Score = 82.8 bits (203), Expect = 1e-16
Identities = 34/52 (65%), Positives = 47/52 (90%)
Query: 136 GLQMGPTVEIESTIEMVGRVRVLHLFSHHVEAKADCRVAIAVSDGSVLGFHC 187
G ++GPT+EIES +E+ GRV+VLH+F+HHV AK+DCRV ++++DGSVLGFHC
Sbjct: 291 GNRVGPTMEIESKMELAGRVKVLHVFTHHVVAKSDCRVTVSIADGSVLGFHC 342
>At3g54200 unknown protein
Length = 235
Score = 93.2 bits (230), Expect = 7e-20
Identities = 63/183 (34%), Positives = 102/183 (55%), Gaps = 9/183 (4%)
Query: 13 RTNLASCLVATVFLIFIL-IIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNN----STTV 67
+ N C+ T+ LI ++ I+I L FTLFKP+ P ++ +V + + N +
Sbjct: 48 KRNCKICICFTILLILLIAIVIVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLL 107
Query: 68 NFTFSQYTSVKNPNRGTFSHYDSSFQLLSY-GKQIGFMFVPAGKINARRTQFMAATFTVQ 126
N T + S+KNPNR FS YDSS LL+Y G+ IG +PA +I AR+T + T T+
Sbjct: 108 NLTLNVDLSLKNPNRIGFS-YDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLM 166
Query: 127 SLPLNLEPEGLQ--MGPTVEIESTIEMVGRVRVLHLFSHHVEAKADCRVAIAVSDGSVLG 184
+ L E + L M + + + +++ G+V VL +F V++ + C ++I+VSD +V
Sbjct: 167 ADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTS 226
Query: 185 FHC 187
HC
Sbjct: 227 QHC 229
>At2g46150 hypothetical protein
Length = 221
Score = 63.5 bits (153), Expect = 6e-11
Identities = 43/184 (23%), Positives = 81/184 (43%), Gaps = 10/184 (5%)
Query: 12 NRTNLASCLVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTTV---- 67
NR + C+ AT ++ I+ TL FT+F+ +DP I + V + + + V
Sbjct: 34 NRIKCSICVTATSLIL--TTIVLTLVFTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLG 91
Query: 68 -NFTFSQYTSVKNPNRGTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFMAATFTVQ 126
N + SVKNPN +F + +++ + G +G GK RT M T +
Sbjct: 92 TNISMIVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIM 151
Query: 127 SLPLNLEP---EGLQMGPTVEIESTIEMVGRVRVLHLFSHHVEAKADCRVAIAVSDGSVL 183
+ +P + V + S + G+V+++ + HV K +C +A+ ++ ++
Sbjct: 152 LDRILSDPGLGREISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQ 211
Query: 184 GFHC 187
C
Sbjct: 212 DVDC 215
>At4g23610 unknown protein
Length = 228
Score = 47.0 bits (110), Expect = 6e-06
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 16/196 (8%)
Query: 4 HEHETPPSNRTNLASCLVATVFLIFILIIIF-TLYFTLFKPQDPKISVTAVQLPS-FNLT 61
H+ ++T L C L ++ + F L T+F P ++V ++ F+
Sbjct: 36 HDRTKYVHSQTKLILCCGFIASLTMLIAVTFIVLSLTVFHLHSPNLTVDSISFNQRFDFV 95
Query: 62 NN--STTVNFTFSQYTSVKNPNRGTF--SHYDSSF---QLLSYGKQIGFMFVPAGKINAR 114
N +T N T S S+ NPN F + + SF +L+ G+ I + I A+
Sbjct: 96 NGKVNTNQNTTVSVEISLHNPNPALFIVKNVNVSFYHGELVVVGESIR----RSETIPAK 151
Query: 115 RTQFMAATFTVQSLPLNLEPEGLQM---GPTVEIESTIEMVGRVRVLHLFSHHVEAKADC 171
RT M T + L GL G V+++S++E+ GRV+ + +F V + DC
Sbjct: 152 RTVKMNLTAEIVKTKLLASLPGLMEDLNGRGVDLKSSVEVRGRVKKMKIFRKTVHLQTDC 211
Query: 172 RVAIAVSDGSVLGFHC 187
+ + ++ F C
Sbjct: 212 FMKMTTNNFLTPTFQC 227
>At2g01080 unknown protein
Length = 231
Score = 45.4 bits (106), Expect = 2e-05
Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 11 SNRTNLASCLVATVFLIFILIIIFTLYFTLF-----KPQDPKISVTAVQL-------PSF 58
S+ +L C +FL+F + + L L KP+ P+ + V + PS
Sbjct: 32 SSSASLKGCCCC-LFLLFAFLALLVLAVVLIVILAVKPKKPQFDLQQVAVVYMGISNPSA 90
Query: 59 NLTNNSTTVNFTFSQYTSVKNPNRGTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQF 118
L + +++ T + NPN+ + +SSF ++ G +G VP +A T+
Sbjct: 91 VLDPTTASLSLTIRMLFTAVNPNKVGIRYGESSFTVMYKGMPLGRATVPGFYQDAHSTKN 150
Query: 119 MAATFTVQSLPLNLEPEGLQMGPTVEIESTIEMV------GRVRVLHLFSHHVEAKADCR 172
+ AT +V + L ++ + + +E+ ++RV++ S V+ +C
Sbjct: 151 VEATISVDRVNL-MQAHAADLVRDASLNDRVELTVRGDVGAKIRVMNFDSPGVQVSVNCG 209
Query: 173 VAIAVSDGSVLGFHC 187
+ I+ +++ C
Sbjct: 210 IGISPRKQALIYKQC 224
>At2g27260 unknown protein
Length = 243
Score = 44.3 bits (103), Expect = 4e-05
Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 20 LVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTTVNFTFSQYTSVKN 79
+V T FL+ + +I+F ++F + +PQ P +++ ++ + +FN++NN V+ + +N
Sbjct: 64 IVFTTFLLLLGLILF-IFFLIVRPQLPDVNLNSLSVSNFNVSNNQ--VSGKWDLQLQFRN 120
Query: 80 PNRGTFSHYDSSFQLLSYGK 99
PN HY+++ + Y +
Sbjct: 121 PNSKMSLHYETALCAMYYNR 140
>At1g52330 hypothetical protein
Length = 214
Score = 39.7 bits (91), Expect = 0.001
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 34/184 (18%)
Query: 6 HETPPSNRTNLASCLVATVFLI-FILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNS 64
H +PPS R + ++FLI F I+I+ +F P DP+I + V++ ++
Sbjct: 36 HPSPPSRRR-----FIISIFLISFASILIY-----IFWPSDPRIKIIRVKISHVHVHRRP 85
Query: 65 T-TVNFTFSQYTSVKNPNRGTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFMAATF 123
+++ T V N + +F D + GK +G + G + A + ++ A
Sbjct: 86 VPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDA-- 143
Query: 124 TVQSLPLNLEPEGLQMGP------------TVEIESTIEMVGRVRVLHLFSHHVEAKADC 171
E +G+ + P +VE ++ E G++ VL F ++AK C
Sbjct: 144 -------EAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVL-FFRFPLKAKVAC 195
Query: 172 RVAI 175
+ +
Sbjct: 196 GILV 199
>At2g35980 similar to harpin-induced protein hin1 from tobacco
Length = 227
Score = 39.3 bits (90), Expect = 0.001
Identities = 37/169 (21%), Positives = 74/169 (42%), Gaps = 13/169 (7%)
Query: 24 VFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTTVNFTFSQYTSVKNPNRG 83
+ LI IL + +++ + +P+ K VT L F+ T+ + + + V+NPN+
Sbjct: 46 ISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKR 105
Query: 84 TFSHYDSSFQLLSY-GKQIGFMFVPAGKINARRTQFMAATFTVQSLPL-------NLEPE 135
+YD Y GK+ + + + T + TF Q+L + L E
Sbjct: 106 IGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAE 165
Query: 136 GLQMGPTVEIESTIEMVGRVRVLHLFSHHVEAKADC---RVAIAVSDGS 181
+ +EI+ + + R ++ L ++ K DC R+ ++ S+G+
Sbjct: 166 RISGVYNIEIKFRLRV--RFKLGDLKFRRIKPKVDCDDLRLPLSTSNGT 212
>At2g27080 Unknown protein (At2g27080; T20P8.13)
Length = 260
Score = 39.3 bits (90), Expect = 0.001
Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 11 SNRTNLASCLVATVFLIFILIII----FTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTT 66
+NR+N C + + +FILI++ F + + +++P+ PK S+ + NL N+++
Sbjct: 66 TNRSNCRCCFCSFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINL-NSTSP 124
Query: 67 VNFTFSQYTSVKNPNRGTFSHYD 89
++ +F+ +N N +Y+
Sbjct: 125 ISPSFNVTVRSRNGNGKIGVYYE 147
>At5g36970 putative protein
Length = 248
Score = 38.9 bits (89), Expect = 0.002
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 12 NRTNLASCLVATVFLIFILII----IFTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTTV 67
+R+ C+ T+ ++F+LI+ I + + +F+P+ P ++ +QL F L N ++
Sbjct: 54 SRSCWCRCVCYTLLVLFLLIVIVGAIVGILYLVFRPKFPDYNIDRLQLTRFQL-NQDLSL 112
Query: 68 NFTFSQYTSVKNPNRGTFSHYDSSFQL 94
+ F+ + KNPN +Y+ ++
Sbjct: 113 STAFNVTITAKNPNEKIGIYYEDGSKI 139
>At4g01410 putative hypoersensitive response protein
Length = 227
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 20 LVATVFLIFILI-IIFTLYFTLFKPQDPKISVTAVQLPSFNLTNN---STTVNFTFSQYT 75
+ +F I +++ II + + +++P P+++V + N T ST+V F+
Sbjct: 44 ICGAIFTILVILGIIALILWLVYRPHKPRLTVVGAAIYDLNFTAPPLISTSVQFS----V 99
Query: 76 SVKNPNRGTFSHYDSSFQLLSYGKQI 101
+NPNR HYD ++Y QI
Sbjct: 100 LARNPNRRVSIHYDKLSMYVTYKDQI 125
>At5g45320 unknown protein
Length = 198
Score = 38.1 bits (87), Expect = 0.003
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 11/189 (5%)
Query: 6 HETPPSNRTNLASCLVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNST 65
H T P C + ++ +I II+F Y + P+ P ISV L F +
Sbjct: 8 HGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIH-PRVPIISVADAHL-DFLKYDIVG 65
Query: 66 TVNFTFSQYTSVKNPNRGTFSHYDSS-FQLLSYGKQIGFMFVPAGKINARRTQFMAATFT 124
+ + V+N N + +D + F+L GK I + P ++ ++ F+ +
Sbjct: 66 VLQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPEFEVVKEKSMFL--PYL 123
Query: 125 VQSLPLNLEPEGLQMGPTVEIES--TIEMVG----RVRVLHLFSHHVEAKADCRVAIAVS 178
VQS P+ L P +Q + T E+ G R RV L S E C++ S
Sbjct: 124 VQSYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLRFRPS 183
Query: 179 DGSVLGFHC 187
D S + C
Sbjct: 184 DHSYIPSPC 192
>At5g21130 putative protein
Length = 281
Score = 37.7 bits (86), Expect = 0.004
Identities = 19/68 (27%), Positives = 35/68 (50%), Gaps = 7/68 (10%)
Query: 4 HEHETPPSNRTNLASC-------LVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLP 56
H +E +TN + C L A + +I + I F ++ +++P P+ SV+ V +
Sbjct: 77 HRYEYLSRRKTNKSCCRRCLCYSLSALLIIIVLAAIAFGFFYLVYQPHKPQFSVSGVSVT 136
Query: 57 SFNLTNNS 64
NLT++S
Sbjct: 137 GINLTSSS 144
>At3g05975 putative protein
Length = 189
Score = 37.7 bits (86), Expect = 0.004
Identities = 33/170 (19%), Positives = 77/170 (44%), Gaps = 19/170 (11%)
Query: 19 CLVA-TVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNS----TTVNFTFSQ 73
C+V+ +F++F++ + + +FKP+ P + + + + TN S +NFT +
Sbjct: 8 CIVSGIIFVLFVIFMTALILAQVFKPKHPILQTVSSTVDGIS-TNISLPYEVQLNFTLTL 66
Query: 74 YTSVKNPNRGTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLE 133
+KNPN F + + +G + +P+ + A+ + + L L L+
Sbjct: 67 EMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPC-----PLFLQLD 121
Query: 134 PEGLQMGPTVE--------IESTIEMVGRVRVLHLFSHHVEAKADCRVAI 175
+G V+ +E+ +M G++ +L +F +++ + C + +
Sbjct: 122 KFVANLGDIVQDVLHGKIVMETRAKMPGKITLLGIFKIPLDSISHCNLVL 171
>At2g35460 similar to harpin-induced protein hin1 from tobacco
Length = 238
Score = 37.0 bits (84), Expect = 0.006
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 19 CLVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTTVNFTFSQYTSVK 78
C + L+ + ++ L+F L +P K VT L F S +++ S S++
Sbjct: 55 CNILIGVLVCLGVVALILWFIL-RPNVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIR 113
Query: 79 NPNRGTFSHYDSSFQLLSYGKQ 100
NPN+ HYD YG Q
Sbjct: 114 NPNQRLGIHYDQLEVRGYYGDQ 135
>At1g17620 unknown protein
Length = 264
Score = 35.8 bits (81), Expect = 0.014
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 19 CLVATVFLIFILIIIFT----LYFTLFKPQDPKISVTAVQLPSFNLTNNSTTVNFTFSQY 74
C T+F+I +L++I + + +++PQ P +V+ +++ + N T ++ + S
Sbjct: 61 CCCWTIFVIILLLLIVAAASAVVYLIYRPQRPSFTVSELKISTLNFT-SAVRLTTAISLS 119
Query: 75 TSVKNPNRGTFSHYD 89
+NPN+ YD
Sbjct: 120 VIARNPNKNVGFIYD 134
>At2g46300 unknown protein
Length = 252
Score = 35.4 bits (80), Expect = 0.018
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 21 VATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTN--NSTTVNFTFSQYTSVK 78
+ V IF+L++ +++ F P+ P S+ + +L F L + + +++ T +K
Sbjct: 65 ITLVLFIFLLLVGTAVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVARVEMK 124
Query: 79 NPNRGTFSHYDSSFQLLSYG 98
NPN +Y ++ LS G
Sbjct: 125 NPNSKLVFYYGNTAVDLSVG 144
>At1g08160 unknown protein
Length = 221
Score = 35.4 bits (80), Expect = 0.018
Identities = 23/83 (27%), Positives = 36/83 (42%), Gaps = 3/83 (3%)
Query: 10 PSNRTNLASCLVATVFLIFILI--IIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTTV 67
P R N C++ + L+ +L+ I Y TL +P+ +V A + F + NN +
Sbjct: 30 PGRRMNPVLCIIVALVLLGLLVGLAILITYLTL-RPKRLIYTVEAASVQEFAIGNNDDHI 88
Query: 68 NFTFSQYTSVKNPNRGTFSHYDS 90
N FS NP + Y S
Sbjct: 89 NAKFSYVIKSYNPEKHVSVRYHS 111
>At3g11660 unknown protein
Length = 209
Score = 35.0 bits (79), Expect = 0.024
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 11 SNRTNLASCLVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTTVNFT 70
S R + + +F++FI+ + L + + +P P+ + + +FN++ N + +
Sbjct: 10 SRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSGNPPNLLTS 69
Query: 71 FSQYT-SVKNPNRGTFSHYDSSFQLLSYGKQ 100
Q T S +NPN +YD +Y Q
Sbjct: 70 NFQITLSSRNPNNKIGIYYDRLDVYATYRSQ 100
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,854,278
Number of Sequences: 26719
Number of extensions: 140441
Number of successful extensions: 585
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 39
length of query: 187
length of database: 11,318,596
effective HSP length: 93
effective length of query: 94
effective length of database: 8,833,729
effective search space: 830370526
effective search space used: 830370526
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC142526.4