BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142394.3 - phase: 0
(321 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 169 2e-42
At2g07730 putative non-LTR retroelement reverse transcriptase 153 1e-37
At2g31080 putative non-LTR retroelement reverse transcriptase 148 4e-36
At2g22350 putative non-LTR retroelement reverse transcriptase 144 6e-35
At2g27870 putative non-LTR retroelement reverse transcriptase 134 7e-32
At1g17390 hypothetical protein 126 2e-29
At4g08830 putative protein 115 2e-26
At5g33360 putative protein 109 2e-24
At1g47320 hypothetical protein 91 8e-19
At1g26950 hypothetical protein 82 5e-16
At4g15580 splicing factor like protein 80 2e-15
At2g31520 putative non-LTR retroelement reverse transcriptase 72 5e-13
At2g02650 putative reverse transcriptase 72 5e-13
At3g09510 putative non-LTR reverse transcriptase 71 9e-13
At2g25550 putative non-LTR retroelement reverse transcriptase 70 2e-12
At4g21420 hypothetical protein 66 2e-11
At2g45230 putative non-LTR retroelement reverse transcriptase 65 6e-11
At3g25270 hypothetical protein 64 8e-11
At5g61080 putative protein 64 1e-10
At3g23315 unknown protein 59 5e-09
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 169 bits (428), Expect = 2e-42
Identities = 105/314 (33%), Positives = 157/314 (49%), Gaps = 11/314 (3%)
Query: 1 MLSNFDNDAQD--EIWLKLWNIRAPERIKHFMSMLYHGRLSTNL-RKHKMGIGNPMCRFC 57
ML+N D+ QD ++ ++W ++APER++ F+ ++ + + TN RK + + +C+ C
Sbjct: 1564 MLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVC 1623
Query: 58 HDEIESEIHVLRDCPKATALWLCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRD 117
IES +HVLRDCP + +W +V + SFF L W+ NL + + +W
Sbjct: 1624 RGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGS-DWST 1682
Query: 118 FWATACHTIWNWRNKETHNDNY---QRPLHAKNIIMIYVNDYHNAIAKFVIVTSQPRHLE 174
+A A W WR +N R K++ + Y + + S R +
Sbjct: 1683 MFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVSIAYSREVE---LRLSGLRVNK 1739
Query: 175 EVGWKEPAIRWVKINTDGACKDG-SIAGCGGLIRGSEGEWLAGFSKFLGKCDAFIAELWG 233
+ W P W KINTDGA + +A GG++R S G W GF+ +G+C A +AELWG
Sbjct: 1740 PIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELWG 1799
Query: 234 VLEGLRCAKRMGFTAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKH 293
V GL A T +EL VDS VVV + + LV+ L +W V++ H
Sbjct: 1800 VYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVRISH 1859
Query: 294 SYREANRCADALAN 307
YREAN AD LAN
Sbjct: 1860 VYREANSLADGLAN 1873
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 153 bits (387), Expect = 1e-37
Identities = 100/301 (33%), Positives = 146/301 (48%), Gaps = 23/301 (7%)
Query: 16 KLWNIRAPERIKHFMSMLYHGRLSTNL---RKHKMGIGNPMCRFCHDEIESEIHVLRDCP 72
++W + APER++ F+ ++ H + TN+ R+H I C C+ ES +HVLRDCP
Sbjct: 646 QIWKLVAPERVRVFIWLVSHMVIMTNVERVRRHLSDIAT--CSVCNGADESILHVLRDCP 703
Query: 73 KATALWLCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRDFWATACHTIWNWRNK 132
T +W ++ + FF W LFTN+ +W ++ W WR
Sbjct: 704 AMTPIWQRLLPQRRQNEFFSQ--FEW----LFTNLDPAKG-DWPTLFSMGIWWAWKWRCG 756
Query: 133 ETHNDNYQRPLHAKNIIMIYVNDYHNAIAKFVIVT-----SQPRHLEEVGWKEPAIRWVK 187
+ + K ++ D + K + T + R + WK P+ RWVK
Sbjct: 757 DVFGERKLCRDRLK-----FIKDIAEEVRKAHVGTLNNHVKRARVERMIRWKAPSDRWVK 811
Query: 188 INTDGACKDGS-IAGCGGLIRGSEGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRMGF 246
+ TDGA + +A G I +GEWL GF+ +G CDA +AELWG GL A GF
Sbjct: 812 LTTDGASRGHQGLAAASGAILNLQGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGF 871
Query: 247 TAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADALA 306
VELN+DS +VV +++ LV+ + +W V+V H YREANR AD LA
Sbjct: 872 RRVELNLDSELVVGFLSTGISKAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLA 931
Query: 307 N 307
N
Sbjct: 932 N 932
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 148 bits (373), Expect = 4e-36
Identities = 97/300 (32%), Positives = 147/300 (48%), Gaps = 19/300 (6%)
Query: 16 KLWNIRAPERIKHFMSMLYHGRLSTNLRKHKMGIG-NPMCRFCHDEIESEIHVLRDCPKA 74
++W + PER++ F+ ++ + TN+ + + + N +C C+ E+ +HVLRDCP
Sbjct: 905 RIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAM 964
Query: 75 TALWLCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRDFWATACHTIWNWRNKET 134
+W ++ FF L W LFTN+ + W + W WR +
Sbjct: 965 EPIWRRLLPLRRHHEFFSQSLLEW----LFTNMDPVKGI-WPTLFGMGIWWAWKWRCCDV 1019
Query: 135 HNDNYQRPLHAKNIIMIYVNDYHNAIAKFVI--VTSQPRHLEE---VGWKEPAIRWVKIN 189
+ K ++ D + + + V ++P + + W+ P+ WVKI
Sbjct: 1020 FGERKICRDRLK-----FIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKIT 1074
Query: 190 TDGACKDG-SIAGCGGLIRGSEGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRMGFTA 248
TDGA + +A GG IR +GEWL GF+ +G C A +AELWG GL A GF
Sbjct: 1075 TDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRR 1134
Query: 249 VELNVDSLVVVNIITSERESNASGRS-LVQKIRKLLQMEWKVKVKHSYREANRCADALAN 307
VEL++D +VV + S SNA S LV+ + +W V+V H YREANR AD LAN
Sbjct: 1135 VELDLDCKLVVGFL-STGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLAN 1193
>At2g22350 putative non-LTR retroelement reverse transcriptase
Length = 321
Score = 144 bits (363), Expect = 6e-35
Identities = 96/293 (32%), Positives = 138/293 (46%), Gaps = 18/293 (6%)
Query: 22 APERIKHFMSMLYHGRLSTNLRKHKMGIGNP-MCRFCHDEIESEIHVLRDCPKATALWLC 80
APER++ F+ ++ + TN+ +++ + + +C+ C E+ +HVLRDCP +W
Sbjct: 2 APERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSR 61
Query: 81 VVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRDFWATACHTIWNWRNKETHNDNYQ 140
+V FF L WI NL W +W W WR N +
Sbjct: 62 LVPRDQIRQFFTASLLEWIYKNLRERGSWPTVFVMAVWWG------WKWRCGNIFGGNGK 115
Query: 141 RPLHAKNIIMIYVNDYHN--AIAKFVIVTSQPR--HLEE-VGWKEPAIRWVKINTDGACK 195
K ++ D AIA + ++ R +E V W P WVK+NTDGA +
Sbjct: 116 CRDRVK-----FIKDLAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASR 170
Query: 196 DG-SIAGCGGLIRGSEGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRMGFTAVELNVD 254
A GG++R G W+ GF+ +G C A +AELWGV GL A G VEL VD
Sbjct: 171 GNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVD 230
Query: 255 SLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADALAN 307
S +VV +T+ + L++ L W V++ H YREANR AD LAN
Sbjct: 231 SKMVVGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLAN 283
>At2g27870 putative non-LTR retroelement reverse transcriptase
Length = 314
Score = 134 bits (337), Expect = 7e-32
Identities = 86/279 (30%), Positives = 128/279 (45%), Gaps = 16/279 (5%)
Query: 38 LSTNLRKHKMGIGNP-MCRFCHDEIESEIHVLRDCPKATALWLCVVDNAARTSFFEGDLS 96
L TN + + + + +C+ C ++ IH+LRDCP +W+ +V R FF L
Sbjct: 5 LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLL 64
Query: 97 SWIKFNLFTNVYWNNNVEWRDFWATACHTIWNWRNKE---THNDNYQRPLHAKNIIMIYV 153
W+ NL + W +A + W WR + R K++
Sbjct: 65 EWLFANLGDRRKTCEST-WSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLAR--- 120
Query: 154 NDYHNAIAKFVIVTSQPRHLEEV----GWKEPAIRWVKINTDGACKDG-SIAGCGGLIRG 208
++A ++ T H E V W +P W K+NTDGA + +A GG++R
Sbjct: 121 ---ETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRD 177
Query: 209 SEGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRMGFTAVELNVDSLVVVNIITSERES 268
EG W GF+ +G C A +AELWGV GL A T +E+ VDS +VV +
Sbjct: 178 EEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINE 237
Query: 269 NASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADALAN 307
LV+ + +W+V++ H YREANR AD LAN
Sbjct: 238 VHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLAN 276
>At1g17390 hypothetical protein
Length = 322
Score = 126 bits (316), Expect = 2e-29
Identities = 74/232 (31%), Positives = 111/232 (46%), Gaps = 2/232 (0%)
Query: 77 LWLCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRDFWATACHTIWNWRNKETHN 136
+W ++ +SFF L WI NL + N W ++ A W WR
Sbjct: 4 IWTRLLPVRRLSSFFSKSLLEWIYANLGEEIEING-CPWAVTFSQAIWWGWKWRYGNIFG 62
Query: 137 DNYQRPLHAKNIIMIYVNDYHNAIAKFVIVTSQPRHLEEVGWKEPAIRWVKINTDGACKD 196
+N + + I ++ + + K + T R + W P + W K+NTDGA +
Sbjct: 63 ENKKCRDRVRFIKDRALDVWKAHVHKMGVTTRTAREERLIAWSPPRVGWFKLNTDGASRG 122
Query: 197 GS-IAGCGGLIRGSEGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRMGFTAVELNVDS 255
+A GG++R +G W GFS +G C A +AELWG GL A G T +E+ +DS
Sbjct: 123 NPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDS 182
Query: 256 LVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADALAN 307
+VV + + + + LV+ LL +W V++ H YREANR AD LAN
Sbjct: 183 EMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLAN 234
>At4g08830 putative protein
Length = 947
Score = 115 bits (289), Expect = 2e-26
Identities = 85/260 (32%), Positives = 116/260 (43%), Gaps = 37/260 (14%)
Query: 16 KLWNIRAPERIKHFMSMLYHGRLSTNLRKHKMGIGNP-MCRFCHDEIESEIHVLRDCPKA 74
+LW + A ER+K F L+H IG+ +C+ C E+ +HVL+DCP
Sbjct: 695 RLWRVVALERVKTF---LWH-------------IGDTSVCQVCKGGDETILHVLKDCPSI 738
Query: 75 TALWLCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRDFWATACHTI----WNWR 130
+W +V FF G L W+ NL N E WAT + W WR
Sbjct: 739 AGIWRRLVQVQRSYDFFNGSLFGWLYVNLGMK-----NAETGYAWATLFAIVVWWSWKWR 793
Query: 131 NKETHNDNYQRPLHAKNIIMIYVNDYHNAIAKFVIVTSQPRHLEE-----VGWKEPAIRW 185
+ + K + D ++ + SQ L V WK P W
Sbjct: 794 CGYVFGEVGKCRDRVK-----FFRDLAAEVSHAHAIHSQNGGLRTRVERLVAWKPPDGEW 848
Query: 186 VKINTDGACKDG-SIAGCGGLIRGSEGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRM 244
VK+NTDGA + +A GG++R G W GF+ +G C A +AELWGV GL A
Sbjct: 849 VKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVYYGLYMAWER 908
Query: 245 GFTAVELNVDSLVVVNIITS 264
FT VEL VDS +VV +T+
Sbjct: 909 RFTRVELEVDSELVVGFLTT 928
>At5g33360 putative protein
Length = 306
Score = 109 bits (273), Expect = 2e-24
Identities = 60/141 (42%), Positives = 81/141 (56%), Gaps = 1/141 (0%)
Query: 168 SQPRHLEEVGWKEPAIRWVKINTDGACKDG-SIAGCGGLIRGSEGEWLAGFSKFLGKCDA 226
S+ R +V W +P++ W K+NTDGA +A GG +R GEW GF+ +G+C A
Sbjct: 128 SRSRMERQVRWSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSA 187
Query: 227 FIAELWGVLEGLRCAKRMGFTAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQME 286
+AELWGV GL A G T +EL VDS +VV + + S+ LV+ L +
Sbjct: 188 PLAELWGVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRD 247
Query: 287 WKVKVKHSYREANRCADALAN 307
W V++ H YREANR AD LAN
Sbjct: 248 WIVRIGHVYREANRLADELAN 268
>At1g47320 hypothetical protein
Length = 259
Score = 90.9 bits (224), Expect = 8e-19
Identities = 49/123 (39%), Positives = 71/123 (56%), Gaps = 1/123 (0%)
Query: 186 VKINTDGACKDG-SIAGCGGLIRGSEGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRM 244
+KINTDGA + +A GG+++ +EG W GFS +G+ A +AELWG GL A
Sbjct: 101 LKINTDGASRGNPGLATAGGVLQDNEGRWCGGFSLNIGRSSAPMAELWGAYYGLYLAWER 160
Query: 245 GFTAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADA 304
+ +EL VDS +VV + + + LV+ + +W+V++ H YREANR AD
Sbjct: 161 KSSHIELEVDSEIVVGFLKTGISDHHPLSFLVRLCHGFISKDWRVRIFHVYREANRFADG 220
Query: 305 LAN 307
LAN
Sbjct: 221 LAN 223
>At1g26950 hypothetical protein
Length = 158
Score = 81.6 bits (200), Expect = 5e-16
Identities = 45/104 (43%), Positives = 58/104 (55%)
Query: 204 GLIRGSEGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRMGFTAVELNVDSLVVVNIIT 263
G +R G+W F+ LG+C A +AELWGV GL A G T +EL VDS +V +T
Sbjct: 17 GALRDEYGDWRGSFALNLGRCTAPLAELWGVYYGLVIAWEKGITRLELEVDSKLVAGFLT 76
Query: 264 SERESNASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADALAN 307
+ E + LV+ +W V+V H YREANR AD LAN
Sbjct: 77 TGIEDSHLLSFLVRLCYGFSSKDWIVRVSHVYREANRFADELAN 120
>At4g15580 splicing factor like protein
Length = 559
Score = 79.7 bits (195), Expect = 2e-15
Identities = 58/158 (36%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 151 IYVNDYHNAIAKFVIVTSQPRHLEEVGWKEPAIRWVKINTDGACKDG-SIAGCGGLIRGS 209
I V HN +A S R + W +P WVK++TDGA + A GG+IR
Sbjct: 3 IEVTKAHNLVAGGS--QSVARVERHIAWTKPPEGWVKVSTDGASRGNPGPAAAGGVIRDE 60
Query: 210 EGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRMGFTAVELNVDSLVVVNIITSERESN 269
+G W+ GF+ L AF+ W G VEL VDS +VV + S
Sbjct: 61 DGLWVGGFALQL----AFVRLRWQSCGG----------RVELEVDSELVVGFLQSGISEA 106
Query: 270 ASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADALAN 307
LV+ LL +W V+V H YREANR AD LAN
Sbjct: 107 HPLAFLVRLCHGLLSKDWLVRVSHVYREANRLADGLAN 144
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 71.6 bits (174), Expect = 5e-13
Identities = 74/304 (24%), Positives = 124/304 (40%), Gaps = 14/304 (4%)
Query: 16 KLWNIRAPERIKHFMSMLYHGRLSTNLRKHKMGIG-NPMCRFCHDEIESEIHVLRDCPKA 74
++WN+ ++KHF+ L+T R G+ +P+C CH E ES H L CP A
Sbjct: 1201 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFA 1260
Query: 75 TALW----LCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRDFWATACHTIWNWR 130
T W ++ N ++ FE ++S+ + F T + ++ + W IW R
Sbjct: 1261 TMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTM--SDFHKLLPVW--LIWRIWKAR 1316
Query: 131 NKETHNDNYQRPLHAKNIIMIYVNDYHNAIAKFVIVTSQPRHLEE--VGWKEPAIRWVKI 188
N N + P +D+ NA S R + E + W+ P +VK
Sbjct: 1317 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 1376
Query: 189 NTDGACKDGSIAGCGG-LIRGSEGEWLA-GFSKFLGKCDAFIAELWGVLEGLRCAKRMGF 246
N D + GG +IR G ++ G K + AE +L L+ G+
Sbjct: 1377 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 1436
Query: 247 TAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADALA 306
T V + D ++N+I ++S + ++ I ++ R+ N+ A LA
Sbjct: 1437 TQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLA 1495
Query: 307 NIGC 310
GC
Sbjct: 1496 KYGC 1499
>At2g02650 putative reverse transcriptase
Length = 365
Score = 71.6 bits (174), Expect = 5e-13
Identities = 79/313 (25%), Positives = 125/313 (39%), Gaps = 25/313 (7%)
Query: 12 EIWLKLWNIRAPERIKHFMSMLYHGRLSTNLRKHKMGI-GNPMCRFCHDEIESEIHVLRD 70
E+ +W + +IKHF+ G L+TN R I +P+C+ C E E+ H++ +
Sbjct: 32 EVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFN 91
Query: 71 CPKATALW----LCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRDFWATACHTI 126
CP ++W + + + S FE +L+ I+ + N+ + FW +
Sbjct: 92 CPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTT--NSLDRFLPFW--IMWRL 147
Query: 127 WNWRNKETHNDNYQRPLHAKNIIMIYVNDYHNA----------IAKFVIVTSQPRHLEEV 176
W RN Q P + + ++ NA +A I TS+ +
Sbjct: 148 WKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSR---RDSS 204
Query: 177 GWKEPAIRWVKINTDGACKDGS-IAGCGGLIRGSEGE-WLAGFSKFLGKCDAFIAELWGV 234
W P WVK N D GS G IR G L G +K + AE G
Sbjct: 205 QWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGF 264
Query: 235 LEGLRCAKRMGFTAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHS 294
L L+ G V DS +V +I + + + G +L+ IR + ++
Sbjct: 265 LHALQVIWAHGLRYVWFESDSKSLVTLINNGEDHSLLG-TLIYDIRHWMLKLPYCSLEFV 323
Query: 295 YREANRCADALAN 307
RE N ADALA+
Sbjct: 324 NRERNSAADALAS 336
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 70.9 bits (172), Expect = 9e-13
Identities = 74/304 (24%), Positives = 123/304 (40%), Gaps = 14/304 (4%)
Query: 16 KLWNIRAPERIKHFMSMLYHGRLSTNLRKHKMGIG-NPMCRFCHDEIESEIHVLRDCPKA 74
++WN+ ++KHF+ L+T R G+ +P C CH E ES H L CP A
Sbjct: 161 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 220
Query: 75 TALW----LCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRDFWATACHTIWNWR 130
T W ++ N ++ FE ++S+ + F T + ++ + W IW R
Sbjct: 221 TMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTM--SDFHKLLPVW--LIWRIWKAR 276
Query: 131 NKETHNDNYQRPLHAKNIIMIYVNDYHNAIAKFVIVTSQPRHLEE--VGWKEPAIRWVKI 188
N N + P +D+ NA S R + E + W+ P +VK
Sbjct: 277 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 336
Query: 189 NTDGACKDGSIAGCGG-LIRGSEGEWLA-GFSKFLGKCDAFIAELWGVLEGLRCAKRMGF 246
N D + GG +IR G ++ G K + AE +L L+ G+
Sbjct: 337 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 396
Query: 247 TAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADALA 306
T V + D ++N+I ++S + ++ I ++ R+ N+ A LA
Sbjct: 397 TQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLA 455
Query: 307 NIGC 310
GC
Sbjct: 456 KYGC 459
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 69.7 bits (169), Expect = 2e-12
Identities = 73/304 (24%), Positives = 123/304 (40%), Gaps = 14/304 (4%)
Query: 16 KLWNIRAPERIKHFMSMLYHGRLSTNLRKHKMGIG-NPMCRFCHDEIESEIHVLRDCPKA 74
++WN+ ++KHF+ L+T R G+ +P C CH E ES H L CP A
Sbjct: 1427 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 1486
Query: 75 TALW----LCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNVEWRDFWATACHTIWNWR 130
T W ++ N ++ FE ++S+ + F T + ++ + W IW R
Sbjct: 1487 TMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTM--SDFHKLLPVW--LIWRIWKAR 1542
Query: 131 NKETHNDNYQRPLHAKNIIMIYVNDYHNAIAKFVIVTSQPRHLEE--VGWKEPAIRWVKI 188
N N + P +D+ NA S R + E + W+ P +VK
Sbjct: 1543 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 1602
Query: 189 NTDGACKDGSIAGCGG-LIRGSEGEWLA-GFSKFLGKCDAFIAELWGVLEGLRCAKRMGF 246
N D + GG +IR G ++ G K + AE +L L+ G+
Sbjct: 1603 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 1662
Query: 247 TAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHSYREANRCADALA 306
T V + D ++N+I ++S + ++ I ++ ++ N+ A LA
Sbjct: 1663 TQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFASIQFGFIRKKGNKLAHVLA 1721
Query: 307 NIGC 310
GC
Sbjct: 1722 KYGC 1725
>At4g21420 hypothetical protein
Length = 229
Score = 66.2 bits (160), Expect = 2e-11
Identities = 42/136 (30%), Positives = 69/136 (49%), Gaps = 1/136 (0%)
Query: 175 EVGWKEPAIRWVKINTDGACKDGSIAGCGGLIRGSEGEWLAGFSKFLGKCDAFIAELWGV 234
+V WK+P +K+N DG+ A GG+ R + E+L G+S+ +G+ + +AE +
Sbjct: 60 KVVWKKPENGRIKLNFDGSRGREGQASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAAL 119
Query: 235 LEGLRCAKRMGFTAVELNVDSLVVVNIITSE-RESNASGRSLVQKIRKLLQMEWKVKVKH 293
GL A G T + L D+ ++++II+ R V I+ ++ + H
Sbjct: 120 KRGLELALENGLTDLWLEGDAKIIMDIISRRGRLRCEKTNKHVNYIKVVMPELNNCVLSH 179
Query: 294 SYREANRCADALANIG 309
YRE NR AD LA +G
Sbjct: 180 VYREGNRVADKLAKLG 195
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 64.7 bits (156), Expect = 6e-11
Identities = 85/312 (27%), Positives = 128/312 (40%), Gaps = 31/312 (9%)
Query: 11 DEIWLKLWNIRAPERIKHFMSMLYHGRLS--TNLRKHKMGIGNPMCRFCHDEIESEIHVL 68
D I+ ++W + P +I HF+ + LS +NL + C C E+ H+L
Sbjct: 1048 DPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLA-REKSCVRCPSHGETVNHLL 1106
Query: 69 RDCPKATALWLCVVDNAARTSFFEGDLSSWIKFNLFTNVYWNNNV-----EWRDFWATAC 123
CP A W A + W + +LF N++ +V E D A
Sbjct: 1107 FKCPFARLTW-------AISPLPAPPGGEWAE-SLFRNMHHVLSVHKSQPEESDHHALIP 1158
Query: 124 HTIWN-WRNKETHNDNY--QRPLHAKNIIMIYVND---YHNAIAKFVIVTSQPRHLEEVG 177
+W W+N+ ND R A +I+ D ++N VTS R V
Sbjct: 1159 WILWRLWKNR---NDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSSTRD-RCVK 1214
Query: 178 WKEPAIRWVKINTDGA-CKDGSIAGCGGLIRGSEGE--WLAGFSKFLGKCDAFIAELWGV 234
W+ P+ WVK NTDGA KD G G ++R G WL G + E+ +
Sbjct: 1215 WQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWL-GLRALPSQQSVLETEVEAL 1273
Query: 235 LEGLRCAKRMGFTAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHS 294
+ R + V DS +V++I +E + S +Q IR LL+ +VK + +
Sbjct: 1274 RWAVLSLSRFNYRRVIFESDSQYLVSLIQNEMDI-PSLAPRIQDIRNLLRHFEEVKFQFT 1332
Query: 295 YREANRCADALA 306
RE N AD A
Sbjct: 1333 RREGNNVADRTA 1344
>At3g25270 hypothetical protein
Length = 343
Score = 64.3 bits (155), Expect = 8e-11
Identities = 61/286 (21%), Positives = 114/286 (39%), Gaps = 53/286 (18%)
Query: 12 EIWLKLWNIRAPERIKHFMSMLYHGRLST--NLRKHKMGIGNPMCRFCHDEIESEIHVLR 69
EI K+W ++ +IKHF+ L G L+T NL++ + +P C C E E+ H+
Sbjct: 13 EIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIR-NHPQCHRCCQEDETSQHLFF 71
Query: 70 DCPKATALWLC--VVDNAARTSFFEGD--------------------LSSWIKFNLFTN- 106
DC A +W + RT+ + L+ WI + L+ +
Sbjct: 72 DCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSR 131
Query: 107 ---VYWNNNVEWRDFWATACHTIWNWRNKETHNDNYQRPLHAKNIIMIYVNDYHNAIAKF 163
V+ ++ W++ A + + W + T+ + + +H+
Sbjct: 132 NQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSR---------------- 175
Query: 164 VIVTSQPRHLEEVGWKEPAIRWVKINTDGACKDGS-IAGCGGLIRGSEGEWLAGFSKFLG 222
Q + W+ P W+K N DGA + A G L+R G ++ G + +G
Sbjct: 176 ----HQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYM-GSGQAIG 230
Query: 223 K--CDAFIAELWGVLEGLRCAKRMGFTAVELNVDSLVVVNIITSER 266
D+ +E ++ ++ A G+ V DS V ++ +E+
Sbjct: 231 STTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEK 276
>At5g61080 putative protein
Length = 348
Score = 63.5 bits (153), Expect = 1e-10
Identities = 38/154 (24%), Positives = 71/154 (45%), Gaps = 5/154 (3%)
Query: 168 SQPRHLEEVGWKEPAIRWVKINTDGACKDGS-IAGCGGLIRGSEGEWLAGFSKFLGKCDA 226
S P E++ W P VK+N G S + G++R G+W+ G+ +
Sbjct: 181 SVPPGFEKI-WTPPL---VKLNIQGTSNPLSDLTRSAGIVRDQSGKWVFGYIRCHKSIPE 236
Query: 227 FIAELWGVLEGLRCAKRMGFTAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQME 286
+A L + +GL+ GF + L S ++N +T++ ++L+ + ++ E
Sbjct: 237 VVAGLLAIYQGLKYLWDSGFRRIHLETTSFEIINALTTKSSLFCKSKTLLGACKDMILKE 296
Query: 287 WKVKVKHSYREANRCADALANIGCIMGNEMMFYE 320
W+ + H +E N CA+ LA E++F+E
Sbjct: 297 WECDIYHISKEQNSCAEWLAKRSEEQPQELVFFE 330
>At3g23315 unknown protein
Length = 191
Score = 58.5 bits (140), Expect = 5e-09
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 178 WKEPAIRWVKINTDGACKDG-SIAGCGGLIRGSEGEWL-AGFSKFLGKCDAFIAELWGVL 235
W++P WVK N D + G +G +IR S+G L G KF G+ AE ++
Sbjct: 30 WQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQGRQTIKEAECTALI 89
Query: 236 EGLRCAKRMGFTAVELNVDSLVVVNIITSERESNASGRSLVQKIRKLLQMEWKVKVKHSY 295
++CA +G+ VE D+ + VN + +E+N R ++ I++ + VK +
Sbjct: 90 WAIQCAWDLGYRRVEFEGDN-ITVNRLIRNKETNPRLRYYLEFIQQWSKAFTTVKFTFRH 148
Query: 296 REANRCADALA 306
RE N C D LA
Sbjct: 149 REQNVCVDVLA 159
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.137 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,734,719
Number of Sequences: 26719
Number of extensions: 321377
Number of successful extensions: 828
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 99
length of query: 321
length of database: 11,318,596
effective HSP length: 99
effective length of query: 222
effective length of database: 8,673,415
effective search space: 1925498130
effective search space used: 1925498130
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Medicago: description of AC142394.3